MSTRG.19878.1.p1 (mRNA) -

Overview
NameMSTRG.19878.1.p1
Unique NameMSTRG.19878.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000234_pilon:474248..476943-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19878.1.p1 ID=MSTRG.19878.1.p1|Name=MSTRG.19878.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2696bp|location=Sequence derived from alignment at sc0000234_pilon:474248..476943- (Clytia hemisphaerica_ch_hm2_pilon)
GCAGCCGAAATTTTTCTAAAATTACGCAACCTGTGCCTCGATTACTCAAA
TTCCAAATTTGCTACCTATGGCGCTCAAACAAAATGAAAATAACTTTTAA
AAATTGACTACTGTGTGACGAGTGCTTCAGAAATTTGAAAATGATGAATG
AAGAAGAAGAATTTGAAAATATTATAGACTTTGATGACGATCCTGACTTT
GATGAAGAAGAACTCTTTACTCTAGAATGCCACCCTGATCCTCACGATGA
GACAACAGAAGTTGTGGTCCCAGATGATGTTAGGGAAATGTTAAATGAGG
GAGTTGATGATGATGCTGAAAATGTCTTTGTTCTGGATGAGATCCCTACA
GTGACTTTTGTCAGTGATGAAACTGTCAACATCATTCCATCATCTTCAAA
ATCTGCAGCTGAAAAGCCGATCCTGATTTGCGAAAATTGCAGCAAGAAAT
ATAAAATGAAATTTCACTACAATAAACATATTTTAATATGCAAGCCCAAG
TCAGCCAACGTATCAGGTAAGTTTTTCTCAAACATTCACAATTTGATACA
TCATTAGGGGTCCTCAGATATTTTTATCTAATAATTCATTCATCATTGCC
TGTCCAAAATCTTTCAAAACCAAATAGCAATAGCCCAATACACGATATGA
TATCATCATTTATTACTTCATAATATATTACATCATTTTAGTACAAAATA
AGCCTTCAGTTTGTCCACTAACAGACTAACACTGTCAATCCAGCCATCTT
TTACACTAGTCATAAAACATTAATATTCCTTTTTTGTCAGGTTTTTTTTT
TGATTTATATATGACTTTAAATCTTAGATCAATCCTAGAAATTATTTTCA
GCTTCTAGATATAAGGATATAAAACAGATTAGAACACCCTTTCAGCCAGA
AAAATGTTGTATATATGCCTTGTGTGATAGATGAGTAGATGGATAGTCGT
TTATGGAGATCCCACTACCATTTCGATTGATGTTTTGACATTTGTTCACT
TCAGAGAAATGCCCTTGTAACCATATTAAAAATCATCTTCTTTTTTCACA
TTCATAGATAAATCGACAACCAAGCGCAAACCAAAACAGCCTCCTGCAAA
CTCAACTAAAAAGGCAGCCAAAACGATAACCTTTCCAGGTTTGTATATTC
AAAATATTATGTATATTTATTCTACTTGCCTTGCATTTGATGCTTATAGG
TTAACCTGTAACCTTTTACAAATCCCCATTTAGCTCGAGATGAGTGTTAC
AAGGAAGAGTTTGTAAAATTTGTGTTTATAGATCAAAATACAAATACATA
GAAAACTATAGATTTCTCACCCCTTTGACAATAATTTAAACTTTTTCGAT
TAATAACTTCCATGGCAGATTTAATCTGTAAAAATTTTTATTCTTTCATT
TCAGCTGTATTTAAAGCTCACGAAAAGAAGGATTATGTAAAGGATTCAAC
TGCACGTTTCCTTGGGTGTCTTAAAAGTTGTGCTGATGACCCATTCTTCA
ATTTAAAGTCTGCTTGCGAAACCCCTGGAAATATGACTGTAAAACTTGCT
AAATCACTCCTGGAAAATGATGAAAGTTGCTTTGACGAAATAGCTAAGCA
ATTTAGCGAATGGCTGTTACCAGCATTGAATCTCCCTGGTACGTCGGACG
CAAGAGAGCATTGCTGCAAATTGTTTATCCAGGAAATGATTTCTTCTGAA
TCGAATCACCAGATTTGGAAAACTTTTTTGACAAAAATTGGCATTAATTT
GGTTGTGCACAAAAGACCAGTCAACATGCTTTTTTCCTTTGTTGCCACAA
AGTTTTTTGAAGAAAGTTTGATTTGGAAGAATGCTGTTCTCATAAAGACA
GGTATGAGAGTGGATTACACCAAACTGAAAATGTCAGAACATGAAGAGAA
AATTTTACGGTATGTCGCCGGTTACATTCCCTACTCCCTTAAACGTCAAT
ATTGGTCTCGGCGCCATGAAAGTACTGGTCTGATGATAACAGAGTTGGTA
TCATCCTGGATGGTGAATGAAGATCAAGAGCTGACCGAGCACAAGCCATT
TTATGAATATACACTTTCATGGACAAACCGTATCAATCGTGGTGGGTTGA
TGATTGTCAATGAAGTTTTTTTTGTATTTGTAAAACGAATGGAAATGGTT
GTGCGTGATGTGCTTAACAAAACATTGATAAGAAATTATAAAGGTGAAGA
CCTTAGAGATTTGATTATGACTAAAATGTTAAAAAATGAGTTGCTTGATA
GGAGTTGGAGGGGTATTACCAGGATCGTACACAATAAGGAGCTGGTTGAT
GTCATCAAGAAAGTTATTTTCCGTAAATGGATGACTATGCGCATTAAATC
CTTTGTTAATGCTTGGATTCAAAGCATCAAATGGAAAGCAAGCAAAGAAA
AGCAAGCCAAGAAAGCTGCTAAAAACAATAAAGACAACGACAAAGAAGAC
AAAAGTAAAACTAAAGCTAAGACAAACATTGATAAAGTTTCAAGACAAGC
AGAGCCAGGGCTCAGAAAAGCACTGTATAGCTCAAAGTAAACTTTTATGG
AATTATACTTGAAATTCTCTTATTTAATATTTTAGTAAAAATAATCCTGT
ACAAGGATGTTTTCATATTTTTGATGGAAAAATCTGTGTTTTCTTTGTTT
GAATGGTTTCAGATATTCGCCAATTCAAGAGATCACGAATGAAGAG

Coding sequence (CDS) from alignment at sc0000234_pilon:474248..476943-

>MSTRG.19878.1.p1 ID=MSTRG.19878.1.p1|Name=MSTRG.19878.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4779bp|location=Sequence derived from alignment at sc0000234_pilon:474248..476943- (Clytia hemisphaerica_ch_hm2_pilon)
CTGTATTTAAAGCTCACGAAAAGAAGGATTATGTAAAGGATTCAACTGCA
CGTTTCCTTGGGTGTCTTAAAAGTTGTGCTGATGACCCATTCTTCAATTT
AAAGTCTGCTTGCGAAACCCCTGGAAATATGACTGTAAAACTTGCTAAAT
CACTCCTGGAAAATGATGAAAGTTGCTTTGACGAAATAGCTAAGCAATTT
AGCGAATGGCTGTTACCAGCATTGAATCTCCCTGGTACGTCGGACGCAAG
AGAGCATTGCTGCAAATTGTTTATCCAGGAAATGATTTCTTCTGAATCGA
ATCACCAGATTTGGAAAACTTTTTTGACAAAAATTGGCATTAATTTGGTT
GTGCACAAAAGACCAGTCAACATGCTTTTTTCCTTTGTTGCCACAAAGTT
TTTTGAAGAAAGTTTGATTTGGAAGAATGCTGTTCTCATAAAGACAGGTA
TGAGAGTGGATTACACCAAACTGAAAATGTCAGAACATGAAGAGAAAATT
TTACGGTATGTCGCCGGTTACATTCCCTACTCCCTTAAACGTCAATATTG
GTCTCGGCGCCATGAAAGTACTGGTCTGATGATAACAGAGTTGGTATCAT
CCTGGATGGTGAATGAAGATCAAGAGCTGACCGAGCACAAGCCATTTTAT
GAATATACACTTTCATGGACAAACCGTATCAATCGTGGTGGGTTGATGAT
TGTCAATGAAGTTTTTTTTGTATTTGTAAAACGAATGGAAATGGTTGTGC
GTGATGTGCTTAACAAAACATTGATAAGAAATTATAAAGGTGAAGACCTT
AGAGATTTGATTATGACTAAAATGTTAAAAAATGAGTTGCTTGATAGGAG
TTGGAGGGGTATTACCAGGATCGTACACAATAAGGAGCTGGTTGATGTCA
TCAAGAAAGTTATTTTCCGTAAATGGATGACTATGCGCATTAAATCCTTT
GTTAATGCTTGGATTCAAAGCATCAAATGGAAAGCAAGCAAAGAAAAGCA
AGCCAAGAAAGCTGCTAAAAACAATAAAGACAACGACAAAGAAGACAAAA
GTAAAACTAAAGCTAAGACAAACATTGATAAAGTTTCAAGACAAGCAGAG
CCAGGGCTCAGAAAAGCACTGTATAGCTCAAAGTAAATAAATCGACAACC
AAGCGCAAACCAAAACAGCCTCCTGCAAACTCAACTAAAAAGGCAGCCAA
AACGATAACCTTTCCAGATGATGAATGAAGAAGAAGAATTTGAAAATATT
ATAGACTTTGATGACGATCCTGACTTTGATGAAGAAGAACTCTTTACTCT
AGAATGCCACCCTGATCCTCACGATGAGACAACAGAAGTTGTGGTCCCAG
ATGATGTTAGGGAAATGTTAAATGAGGGAGTTGATGATGATGCTGAAAAT
GTCTTTGTTCTGGATGAGATCCCTACAGTGACTTTTGTCAGTGATGAAAC
TGTCAACATCATTCCATCATCTTCAAAATCTGCAGCTGAAAAGCCGATCC
TGATTTGCGAAAATTGCAGCAAGAAATATAAAATGAAATTTCACTACAAT
AAACATATTTTAATATGCAAGCCCAAGTCAGCCAACGTATCAGCTGTATT
TAAAGCTCACGAAAAGAAGGATTATGTAAAGGATTCAACTGCACGTTTCC
TTGGGTGTCTTAAAAGTTGTGCTGATGACCCATTCTTCAATTTAAAGTCT
GCTTGCGAAACCCCTGGAAATATGACTGTAAAACTTGCTAAATCACTCCT
GGAAAATGATGAAAGTTGCTTTGACGAAATAGCTAAGCAATTTAGCGAAT
GGCTGTTACCAGCATTGAATCTCCCTGGTACGTCGGACGCAAGAGAGCAT
TGCTGCAAATTGTTTATCCAGGAAATGATTTCTTCTGAATCGAATCACCA
GATTTGGAAAACTTTTTTGACAAAAATTGGCATTAATTTGGTTGTGCACA
AAAGACCAGTCAACATGCTTTTTTCCTTTGTTGCCACAAAGTTTTTTGAA
GAAAGTTTGATTTGGAAGAATGCTGTTCTCATAAAGACAGGTATGAGAGT
GGATTACACCAAACTGAAAATGTCAGAACATGAAGAGAAAATTTTACGGT
ATGTCGCCGGTTACATTCCCTACTCCCTTAAACGTCAATATTGGTCTCGG
CGCCATGAAAGTACTGGTCTGATGATAACAGAGTTGGTATCATCCTGGAT
GGTGAATGAAGATCAAGAGCTGACCGAGCACAAGCCATTTTATGAATATA
CACTTTCATGGACAAACCGTATCAATCGTGGTGGGTTGATGATTGTCAAT
GAAGTTTTTTTTGTATTTGTAAAACGAATGGAAATGGTTGTGCGTGATGT
GCTTAACAAAACATTGATAAGAAATTATAAAGGTGAAGACCTTAGAGATT
TGATTATGACTAAAATGTTAAAAAATGAGTTGCTTGATAGGAGTTGGAGG
GGTATTACCAGGATCGTACACAATAAGGAGCTGGTTGATGTCATCAAGAA
AGTTATTTTCCGTAAATGGATGACTATGCGCATTAAATCCTTTGTTAATG
CTTGGATTCAAAGCATCAAATGGAAAGCAAGCAAAGAAAAGCAAGCCAAG
AAAGCTGCTAAAAACAATAAAGACAACGACAAAGAAGACAAAAGTAAAAC
TAAAGCTAAGACAAACATTGATAAAGTTTCAAGACAAGCAGAGCCAGGGC
TCAGAAAAGCACTGTATAGCTCAAAGTAAATAAATCGACAACCAAGCGCA
AACCAAAACAGCCTCCTGCAAACTCAACTAAAAAGGCAGCCAAAACGATA
ACCTTTCCAGATGATGAATGAAGAAGAAGAATTTGAAAATATTATAGACT
TTGATGACGATCCTGACTTTGATGAAGAAGAACTCTTTACTCTAGAATGC
CACCCTGATCCTCACGATGAGACAACAGAAGTTGTGGTCCCAGATGATGT
TAGGGAAATGTTAAATGAGGGAGTTGATGATGATGCTGAAAATGTCTTTG
TTCTGGATGAGATCCCTACAGTGACTTTTGTCAGTGATGAAACTGTCAAC
ATCATTCCATCATCTTCAAAATCTGCAGCTGAAAAGCCGATCCTGATTTG
CGAAAATTGCAGCAAGAAATATAAAATGAAATTTCACTACAATAAACATA
TTTTAATATGCAAGCCCAAGTCAGCCAACGTATCAGCTGTATTTAAAGCT
CACGAAAAGAAGGATTATGTAAAGGATTCAACTGCACGTTTCCTTGGGTG
TCTTAAAAGTTGTGCTGATGACCCATTCTTCAATTTAAAGTCTGCTTGCG
AAACCCCTGGAAATATGACTGTAAAACTTGCTAAATCACTCCTGGAAAAT
GATGAAAGTTGCTTTGACGAAATAGCTAAGCAATTTAGCGAATGGCTGTT
ACCAGCATTGAATCTCCCTGGTACGTCGGACGCAAGAGAGCATTGCTGCA
AATTGTTTATCCAGGAAATGATTTCTTCTGAATCGAATCACCAGATTTGG
AAAACTTTTTTGACAAAAATTGGCATTAATTTGGTTGTGCACAAAAGACC
AGTCAACATGCTTTTTTCCTTTGTTGCCACAAAGTTTTTTGAAGAAAGTT
TGATTTGGAAGAATGCTGTTCTCATAAAGACAGGTATGAGAGTGGATTAC
ACCAAACTGAAAATGTCAGAACATGAAGAGAAAATTTTACGGTATGTCGC
CGGTTACATTCCCTACTCCCTTAAACGTCAATATTGGTCTCGGCGCCATG
AAAGTACTGGTCTGATGATAACAGAGTTGGTATCATCCTGGATGGTGAAT
GAAGATCAAGAGCTGACCGAGCACAAGCCATTTTATGAATATACACTTTC
ATGGACAAACCGTATCAATCGTGGTGGGTTGATGATTGTCAATGAAGTTT
TTTTTGTATTTGTAAAACGAATGGAAATGGTTGTGCGTGATGTGCTTAAC
AAAACATTGATAAGAAATTATAAAGGTGAAGACCTTAGAGATTTGATTAT
GACTAAAATGTTAAAAAATGAGTTGCTTGATAGGAGTTGGAGGGGTATTA
CCAGGATCGTACACAATAAGGAGCTGGTTGATGTCATCAAGAAAGTTATT
TTCCGTAAATGGATGACTATGCGCATTAAATCCTTTGTTAATGCTTGGAT
TCAAAGCATCAAATGGAAAGCAAGCAAAGAAAAGCAAGCCAAGAAAGCTG
CTAAAAACAATAAAGACAACGACAAAGAAGACAAAAGTAAAACTAAAGCT
AAGACAAACATTGATAAAGTTTCAAGACAAGCAGAGCCAGGGCTCAGAAA
AGCACTGTATAGCTCAAAGTAAATAAATCGACAACCAAGCGCAAACCAAA
ACAGCCTCCTGCAAACTCAACTAAAAAGGCAGCCAAAACGATAACCTTTC
CAGATGATGAATGAAGAAGAAGAATTTGAAAATATTATAGACTTTGATGA
CGATCCTGACTTTGATGAAGAAGAACTCTTTACTCTAGAATGCCACCCTG
ATCCTCACGATGAGACAACAGAAGTTGTGGTCCCAGATGATGTTAGGGAA
ATGTTAAATGAGGGAGTTGATGATGATGCTGAAAATGTCTTTGTTCTGGA
TGAGATCCCTACAGTGACTTTTGTCAGTGATGAAACTGTCAACATCATTC
CATCATCTTCAAAATCTGCAGCTGAAAAGCCGATCCTGATTTGCGAAAAT
TGCAGCAAGAAATATAAAATGAAATTTCACTACAATAAACATATTTTAAT
ATGCAAGCCCAAGTCAGCCAACGTATCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19878MSTRG.19878Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19878.1.p1MSTRG.19878.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19878.1.p1.exon3MSTRG.19878.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19878.1.p1.exon2MSTRG.19878.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19878.1.p1.exon1MSTRG.19878.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000234_pilongenomesc0000234_pilon:474248..476943 -