MSTRG.19858.2.p1 (mRNA) -

Overview
NameMSTRG.19858.2.p1
Unique NameMSTRG.19858.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000233_pilon:568348..573495+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19858.2.p1 ID=MSTRG.19858.2.p1|Name=MSTRG.19858.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5148bp|location=Sequence derived from alignment at sc0000233_pilon:568348..573495+ (Clytia hemisphaerica_ch_hm2_pilon)
TATACGGTTAAAAAGAAACCCGGGTATCTAACCCAAGGACACAAAGGGAA
AGCAAAAAGTATACAGTAATTATTATACCGTCAGTACAACTTATCTTGTT
TGCTGGATGAAATAAAATCAAGATAACAAAGTTTTATCCATTGTTGCACA
ACTCGAAAAGCTTTGCTTTGTTGTCTTGATTTGAACTTTCTATCTAAAAT
TAAAATGGCtactttcaaatttcttttcttttaaacataCAGGAACAGAT
GATAGTTCAACATATTATTACTTATTTATGGCAGAAAATAATGATGGTGA
GCAGCAGTGTTCCTCACAGCCATCACAGTCAAAGCGACCAAGAAAGACAA
GTAAGTAGTTTCTTCTTTgtgttcaacattttcatttgccacattttgtg
aaaatgtcGGCGAGTGGTggaaaaacaagtttttgtgATTGTTTTTTAAC
GCCCAGTCcagtcagcaccttgaactgactacccaattcccctcacatgg
catgggttgactcTGGCGAAGGTTCAtccacttgccaagtgaaccgctgc
gagttgGAATCAAACCTCAGTCCACAGGTCCACAGTCCACAGTGCCTAAT
TTTTATGCATATGCATTTACAAGCATTTACCACATTTGCCACTGAAAGGC
ATGATATTAGATTGTGATCTGATattaccagacggtgtcaatcgaacaac
ttcgaacaaaaatcgcaatcgaaccaatcgaacgtaatcgaaccaatcga
acgtaatcgaaccaatcgaacgtaatcgaacgtgatcgaatAATTTGCAA
TTCGATTATCgttgactatgttccattggttcgattacCTTCgattacaa
tagaccttttttcaaagaggccaccctgttgaataattatgtagtccagc
agaaaaacatgataaaaccatgcataattattacaatatgcattatacag
taattatgcatggctctatcattgtttttatggctggacttaataattat
tcaacaggacgtcctctttgaaaaaaggtctattatgttcgctgagtttg
attgcgattaaattaaattggatcactctgttagagctttttagcgtggg
cggcatttgatggctatgcaagtttccctccactgatgcaagttacccga
cttcacgatATCACCTTTCCATGGTACTCTCTTTTAAGGTACACATCAAT
ATTTGAATTACGATTATTTGATTAATGTATGACCATTACTGCATATATAT
AAAACACCATACTGTGTCTTAAAGTTtgagaaatgtttgtttgctAACTC
AGCTTTTTTGAATTATATACAAGCTCTTTAGTAACGTCGAAGAGTGATAC
ATTGCGCTTCTCTGCCATCCTTTGCACGGTGTATTTTACCAAATCGCCAA
TATGTACATTTTAAAGACAAAGGCAAATTTTTGTAAGGTTTAGGTTGTAA
TTGATCACATGTTTCAATCTGTAAACAAGAGATTTAATTTGATGACtgga
attttgagtaaaacaaaggaaataaaGTGAGTAAAAAGTATGGCAGAAAA
GTGCAATATATCACCCTTCGATGGTATTGAATAGATATGAACGTGGAGCA
ATCTTTGatcgaaaacaaaaagaaatccaaaatatttgtttacctCAACC
AAAAAGAGCAATAGACCGATATCtggtctgatatgaaacatgaaTACCGA
TATCTCAATCTAAAAAATGAGAGTTATGTAATTTAAATTTACACAAGAAT
GATTTAATAATTTATTATAGTGTCCAATCTTAAATTTAACCACAAAAGAT
ATTTTGTCCAAGAAACCTTAACTTTTCTAAGACGATGTCATAGAATCCCG
AAAGCTCTATTCAATCTTAAAGATTAATTAAAAATCTCTAAGATTAATAT
TAACCTCCtttaaaaacataactttttaatGGAACTAATCATAAaccaat
ttttcagaatttaaaaaatcaaactttgttggTCGATAAATTTCTATTAA
GTTTTGTTGTCAAACTAATAGAACTaaagaactaaagaaaaaatctgCAT
GGTGTGCCTGTTAAACTGATGGCCACTACTCAAAGCTCTAAAGTCTCTGC
ACACTAATTTACTGGTCGAACTTTGTGGAACTATAATATTTGTCAGGTTT
GCTGAACTTTCTCTGTTGTCATACTTTGCAGAAGTTCCTTGAATTTTAAT
CAAACACTTGGATTTTTTAAGACAGTCTGGATTACATGATATGACATGAG
ATTGATAATTGATGATTAAATAATTTGCATTCAGATTTTAAAAGTCGGCA
AtgatctatctatctatctatctatattttaAGTATCAAAAGGTCATAAG
ACCCATTATCCATACataaaaattataagattgtataaaaataaaaagta
aataacctatgtaaatttttttgcacTAACAGAGGACACAAAGAAATAGC
TTGAGAAGGCTAAATTAGAGAAATGGCTAGAGTAGGCTGAATTAGAGTAT
AAGTAGTGGCAGAACAACCAGCAAAACTAGGAAGGTGCACAACAAGAcgc
caaacaaaaacaaaagagttATATATGCAAAGATAAAGAAAAGCTGGTTG
TAAAATAGTggctaaaatttgaaatgggGGAGTCCTCGATTCAAACAAtt
gctaaaaataaattttatttaataagTTACATAAATGTAATAGGGATAAA
ATGCTAAACTAGTGTAATAATCAAGGTTTGTCTAATTTATTAGTTCATTT
TATTGGGTGATCAATAGTGCTAATCTATCATTTCAGTTATCTAGATCATG
ATTGCTGGTCAAGAATTtataaatttcaagaattttttaagTTGTAACAT
CTGAAAAGGTATTACATGTATAaacagtgctgcaaatagggaaatatata
ttatttaaaacaaatttcaatcaattagaattgattattgatatattatt
attattgattaGTTGTCAATTGCTAACAATAACACAAGTCTAAGGATAAG
CAATCAATTACTGTCAAAGGACAAGAAAAAACATATCATCCATGTAGCAT
TATGTCTGATGTTTTAGATAAAAccaagaatgtttttttttgcccttGGG
AATAGGCTTCAgttacttttgaaaaacaaagtATTTTAGTTGCCttggaa
atatataaaaagtattttgCAAAGAAAGCATGTTTTCACCATTTCTTTTG
CAACTAAACTTACTACTATTGACTTATCACCTTGGCTATACaagatatga
aattttgaaggtTTGATTTTGTTTAATTACTTTAAAGCAGTGTTCAGACA
AGACAAGTTAAACCCTCTTAATAGCAAGcagggggtagaatctaccaccc
ttgataattttttatcaatatgatCATATGTAGTTTATATCAAACTTaca
gaaagtaaaaaataatttacacaACATGcattatcataattttttctcta
ttttttctatttctctattttcCTTCACACTGCAGATGACTGGATTGCAT
CATTTTAATCACTAAAACTATTCTTTTAACATGAatggatttgaaaaatt
gttatttCTTTGTAAAGAGGATAATATTAATTCCATGGGAAATTTTGAAG
GTTGCTAAAAacctaaaaattacaaaaattcttTGTCTACACATCACTTT
GTTTAGGTCTTGGTTTGATGAAACAAATTGTGGCAGTTAACAAATCACTT
AAAGCTAAAGCAAAACCCAAGAAAAAATCAGAGATTTGCTTTGTTGAACT
CAAGAGATCTGCTGAAACTGGTTAGTATATTTTGTTTGTGCGGGACAact
gaaactctaaattttgtCATCAATACAGACCAAAAAGATTTCTCCctgtt
tcaaacttttcaacctgaattttattgcacaaaaacttttgaaagtttta
atcttTAGCTAAGGTTTGTTGTCTTGTTCAATTTTAAATGCATGcattct
ttctcttttttttggataATCTAGGTCAAAGGATCTACAAGCTGAAGAGA
CCAAAACATAACAATGGAATGAAAAGAAGAATATCAAATACTGGTAAATG
TGCAGTTACATTACTTTATGCACTGGGTAATATTGAGGTACCTAAATCTA
AATAGAGTTGTGTATCTTGtatgtattgaaatttcaaCTCTTTCTTGTTA
TTTTCACCAGTAATCACTGCAGATGAGCAAGTTTTGGATATTgatgcaaa
aaattcaaactggcAAATTGCAGAAAATCTGGACACCATCGATAATGAAG
AATTAAATGACATAAATCCACAAAGTGATACAAAAAGTAGGTATCATATC
ATCCCTTCTTGAAGTCAATTAAGGAAAAaacattgtttaaaattttcact
gtTATAAGACTCTATGTAAGATCAAATCCACCCTCataaaaaaaggggaa
aaactggcaaaaaaaacatttttggtgtTATAATGTAACAGAGTAATAAC
GATCAactattttaatttatttcagtGAATAGTTGGTTAGAAACGCTTCT
TAActttgtcaaaacaaaaaaaagaagaagtcaTGGTTCGAAAGATCAAG
ATCCTGCCAAGAAGATTGGGATTTGCTGAGGAAGAATATTTGGAGGACAG
TGCAGGATAGGGAAGTTTTGGATGAACATTGTAATGTGTGTTGTGATCGA
CTTGGTGATCTTTATTGCATGGATTGTCACAAATCATTTTGTCATGTATG
TGACGATGTCTTCCACTTGGCAAATCCATTTCATGATAGATTGTCCTCTG
GCAGGTACCTAGATGTTCTGGAGTGTTTGGatgagaagaaagaaattata
cCAACAGGTATTTTTCAAATAGTCAGTTATAATTAGAAAATGTATCATGC
AATACATCTAACAGCTTCATATACACACTTTAATCATAGTGCATAGAGCC
ttctcaaaatcacaaaaagggAGGGAACATCTGTGAAttgctattttttc
attaacTTTTAGTTCGCTATCCACCACTTAAATGTGTTTGTTCAGTTTGT
GGCAGTAAGGAGGTCACCAAGATCGCTACAGATGAGTATTGCATTGCCGT
TACATTGAAAGGTAAGCAATttgatttagaaatttcaaagtcaacaATTA
TAGGAATCTCCTCTTAAAATTGTAATTGTTACCAAATTTATTCACTTA

Coding sequence (CDS) from alignment at sc0000233_pilon:568348..573495+

>MSTRG.19858.2.p1 ID=MSTRG.19858.2.p1|Name=MSTRG.19858.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2430bp|location=Sequence derived from alignment at sc0000233_pilon:568348..573495+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAGAAAATAATGATGGTGAGCAGCAGTGTTCCTCACAGCCATCACA
GTCAAAGCGACCAAGAAAGACAAGTCTTGGTTTGATGAAACAAATTGTGG
CAGTTAACAAATCACTTAAAGCTAAAGCAAAACCCAAGAAAAAATCAGAG
ATTTGCTTTGTTGAACTCAAGAGATCTGCTGAAACTGGTCAAAGGATCTA
CAAGCTGAAGAGACCAAAACATAACAATGGAATGAAAAGAAGAATATCAA
ATACTGTAATCACTGCAGATGAGCAAGTTTTGGATATTgatgcaaaaaat
tcaaactggcAAATTGCAGAAAATCTGGACACCATCGATAATGAAGAATT
AAATGACATAAATCCACAAAGTGATACAAAAAtGAATAGTTGGTTAGAAA
CGCTTCTTAActttgtcaaaacaaaaaaaagaagaagtcaTGGTTCGAAA
GATCAAGATCCTGCCAAGAAGATTGGGATTTGCTGAATGGCAGAAAATAA
TGATGGTGAGCAGCAGTGTTCCTCACAGCCATCACAGTCAAAGCGACCAA
GAAAGACAAGTCTTGGTTTGATGAAACAAATTGTGGCAGTTAACAAATCA
CTTAAAGCTAAAGCAAAACCCAAGAAAAAATCAGAGATTTGCTTTGTTGA
ACTCAAGAGATCTGCTGAAACTGGTCAAAGGATCTACAAGCTGAAGAGAC
CAAAACATAACAATGGAATGAAAAGAAGAATATCAAATACTGTAATCACT
GCAGATGAGCAAGTTTTGGATATTgatgcaaaaaattcaaactggcAAAT
TGCAGAAAATCTGGACACCATCGATAATGAAGAATTAAATGACATAAATC
CACAAAGTGATACAAAAAtGAATAGTTGGTTAGAAACGCTTCTTAActtt
gtcaaaacaaaaaaaagaagaagtcaTGGTTCGAAAGATCAAGATCCTGC
CAAGAAGATTGGGATTTGCTGAATGGCAGAAAATAATGATGGTGAGCAGC
AGTGTTCCTCACAGCCATCACAGTCAAAGCGACCAAGAAAGACAAGTCTT
GGTTTGATGAAACAAATTGTGGCAGTTAACAAATCACTTAAAGCTAAAGC
AAAACCCAAGAAAAAATCAGAGATTTGCTTTGTTGAACTCAAGAGATCTG
CTGAAACTGGTCAAAGGATCTACAAGCTGAAGAGACCAAAACATAACAAT
GGAATGAAAAGAAGAATATCAAATACTGTAATCACTGCAGATGAGCAAGT
TTTGGATATTgatgcaaaaaattcaaactggcAAATTGCAGAAAATCTGG
ACACCATCGATAATGAAGAATTAAATGACATAAATCCACAAAGTGATACA
AAAAtGAATAGTTGGTTAGAAACGCTTCTTAActttgtcaaaacaaaaaa
aagaagaagtcaTGGTTCGAAAGATCAAGATCCTGCCAAGAAGATTGGGA
TTTGCTGAATGGCAGAAAATAATGATGGTGAGCAGCAGTGTTCCTCACAG
CCATCACAGTCAAAGCGACCAAGAAAGACAAGTCTTGGTTTGATGAAACA
AATTGTGGCAGTTAACAAATCACTTAAAGCTAAAGCAAAACCCAAGAAAA
AATCAGAGATTTGCTTTGTTGAACTCAAGAGATCTGCTGAAACTGGTCAA
AGGATCTACAAGCTGAAGAGACCAAAACATAACAATGGAATGAAAAGAAG
AATATCAAATACTGTAATCACTGCAGATGAGCAAGTTTTGGATATTgatg
caaaaaattcaaactggcAAATTGCAGAAAATCTGGACACCATCGATAAT
GAAGAATTAAATGACATAAATCCACAAAGTGATACAAAAAtGAATAGTTG
GTTAGAAACGCTTCTTAActttgtcaaaacaaaaaaaagaagaagtcaTG
GTTCGAAAGATCAAGATCCTGCCAAGAAGATTGGGATTTGCTGAATGGCA
GAAAATAATGATGGTGAGCAGCAGTGTTCCTCACAGCCATCACAGTCAAA
GCGACCAAGAAAGACAAGTCTTGGTTTGATGAAACAAATTGTGGCAGTTA
ACAAATCACTTAAAGCTAAAGCAAAACCCAAGAAAAAATCAGAGATTTGC
TTTGTTGAACTCAAGAGATCTGCTGAAACTGGTCAAAGGATCTACAAGCT
GAAGAGACCAAAACATAACAATGGAATGAAAAGAAGAATATCAAATACTG
TAATCACTGCAGATGAGCAAGTTTTGGATATTgatgcaaaaaattcaaac
tggcAAATTGCAGAAAATCTGGACACCATCGATAATGAAGAATTAAATGA
CATAAATCCACAAAGTGATACAAAAAtGAATAGTTGGTTAGAAACGCTTC
TTAActttgtcaaaacaaaaaaaagaagaagtcaTGGTTCGAAAGATCAA
GATCCTGCCAAGAAGATTGGGATTTGCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19858MSTRG.19858Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19858.2.p1MSTRG.19858.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19858.2.p1.exon1MSTRG.19858.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19858.2.p1.exon2MSTRG.19858.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19858.2.p1.exon3MSTRG.19858.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19858.2.p1.exon4MSTRG.19858.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19858.2.p1.exon5MSTRG.19858.2.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19858.2.p1.exon6MSTRG.19858.2.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000233_pilongenomesc0000233_pilon:568348..573495 +