MSTRG.19846.1.p1 (mRNA) -

Overview
NameMSTRG.19846.1.p1
Unique NameMSTRG.19846.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000233_pilon:338562..339777-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19846.1.p1 ID=MSTRG.19846.1.p1|Name=MSTRG.19846.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1216bp|location=Sequence derived from alignment at sc0000233_pilon:338562..339777- (Clytia hemisphaerica_ch_hm2_pilon)
GAAAAGTGTTCTTGTGGGAAAAGAAAAAGAGGAGTGATTGTTGACCGTTG
CAAAAATAGAATCCAGCTTGCCGCAGTAAGTTCACATGGCCTTATATAGT
TTTTGGTTTTTCAAAGTCTACAAAAAAATTCATCATAAAAAATGGAAGTG
TTAGAGAAACTATAAACAGTGTAACCTATTTATCATTTAGCTGTGGCAAA
ATTTTTCTTCAATCTAATCTTAGCTCCAAGATCAAGATCCACAGCTAAAT
AAGCAGGCTAGCAATGCTGACGAATGGGACGATTATGAAAGCGAATTAAA
AGGAGCAAATAAGAAGATACAAGTAAGAAATAAACATTGTGTTTGGCATG
AGTTTTACTATACTCTTAGCTAGCTTATCGTTGAACTCTTGCTGAGTTTC
TAGTTCTAGGATGAATACATGCAAAATTTCCCCCATTTTACTAACTCAAA
GGTCCCTACAAAGGAAATATTTTACACTATTCTTTTCTATTAAGCAAAAA
TATTTTTCTCTCACACAGGAGTATCTTTGTGAATTATCAAGAGAAGACTT
GATCTCGATAATAATCGAAACGAACAACGAAGGTAGAGGTTCACTAGACA
GCATCAAGGATTCATTAGCATTCGTCAAGGAAACAACTTCTGAGACCGAG
ACTACAGACGATGCTCAGGGAAGCCCACCCCCACCCCCACCCCAACCCCC
ACCCCAACCCCCATCTTCATCGAAACCAGACTGGTGTAAATGTTCGAAAT
GCAGAGACATGCCTACGTTAGTGGAGAACAAATGTTGCGGGCGTAAAAAC
TGCATAACATTGCATGCAAAATTTGGTAAATTTTGTCTAGATAAGGACAT
CTTAATTTTGAATATAAAAGCAAGAGCCGATATACGAGCTGAGCAAGTAA
ACGTTGAGAAGAACAAATTACGTAAAGCCTCGTATAGACAATTTATTCTT
TGGAAACACGGTAGATTGGGAAGATACGAAAGGAGAGTCGCCCCATCATG
TGTTGTGTTAGCAGTACGTAGAAAGTTCCCCAGTAGAGACGGCGTATACA
TGGGGTACAAGCCAAGATGAATCTAAAAATTGAACGGAAACAATTCGGTG
AAGTTTGGAGTTTTATAGATAGCAATATGATCGTTGGTTTTGCATTGCGT
TACATAGTTGAATTATTTCAATTTTTAGAGTCGTTTTGTAATTTTTATGT
TTATGTTGTATTTGAT

Coding sequence (CDS) from alignment at sc0000233_pilon:338562..339777-

>MSTRG.19846.1.p1 ID=MSTRG.19846.1.p1|Name=MSTRG.19846.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2178bp|location=Sequence derived from alignment at sc0000233_pilon:338562..339777- (Clytia hemisphaerica_ch_hm2_pilon)
GAGTATCTTTGTGAATTATCAAGAGAAGACTTGATCTCGATAATAATCGA
AACGAACAACGAAGGTAGAGGTTCACTAGACAGCATCAAGGATTCATTAG
CATTCGTCAAGGAAACAACTTCTGAGACCGAGACTACAGACGATGCTCAG
GGAAGCCCACCCCCACCCCCACCCCAACCCCCACCCCAACCCCCATCTTC
ATCGAAACCAGACTGGTGTAAATGTTCGAAATGCAGAGACATGCCTACGT
TAGTGGAGAACAAATGTTGCGGGCGTAAAAACTGCATAACATTGCATGCA
AAATTTGGTAAATTTTGTCTAGATAAGGACATCTTAATTTTGAATATAAA
AGCAAGAGCCGATATACGAGCTGAGCAAGTAAACGTTGAGAAGAACAAAT
TACGTAAAGCCTCGTATAGACAATTTATTCTTTGGAAACACGGTAGATTG
GGAAGATACGAAAGGAGAGTCGCCCCATCATGTGTTGTGTTAGCAGTACG
TAGAAAGTTCCCCAGTAGAGACGGCGTATACATGGGGTACAAGCCAAGAT
GACTCCAAGATCAAGATCCACAGCTAAATAAGCAGGCTAGCAATGCTGAC
GAATGGGACGATTATGAAAGCGAATTAAAAGGAGCAAATAAGAAGATACA
AGAAAAGTGTTCTTGTGGGAAAAGAAAAAGAGGAGTGATTGTTGACCGTT
GCAAAAATAGAATCCAGCTTGCCGCAGAGTATCTTTGTGAATTATCAAGA
GAAGACTTGATCTCGATAATAATCGAAACGAACAACGAAGGTAGAGGTTC
ACTAGACAGCATCAAGGATTCATTAGCATTCGTCAAGGAAACAACTTCTG
AGACCGAGACTACAGACGATGCTCAGGGAAGCCCACCCCCACCCCCACCC
CAACCCCCACCCCAACCCCCATCTTCATCGAAACCAGACTGGTGTAAATG
TTCGAAATGCAGAGACATGCCTACGTTAGTGGAGAACAAATGTTGCGGGC
GTAAAAACTGCATAACATTGCATGCAAAATTTGGTAAATTTTGTCTAGAT
AAGGACATCTTAATTTTGAATATAAAAGCAAGAGCCGATATACGAGCTGA
GCAAGTAAACGTTGAGAAGAACAAATTACGTAAAGCCTCGTATAGACAAT
TTATTCTTTGGAAACACGGTAGATTGGGAAGATACGAAAGGAGAGTCGCC
CCATCATGTGTTGTGTTAGCAGTACGTAGAAAGTTCCCCAGTAGAGACGG
CGTATACATGGGGTACAAGCCAAGATGACTCCAAGATCAAGATCCACAGC
TAAATAAGCAGGCTAGCAATGCTGACGAATGGGACGATTATGAAAGCGAA
TTAAAAGGAGCAAATAAGAAGATACAAGAAAAGTGTTCTTGTGGGAAAAG
AAAAAGAGGAGTGATTGTTGACCGTTGCAAAAATAGAATCCAGCTTGCCG
CAGAGTATCTTTGTGAATTATCAAGAGAAGACTTGATCTCGATAATAATC
GAAACGAACAACGAAGGTAGAGGTTCACTAGACAGCATCAAGGATTCATT
AGCATTCGTCAAGGAAACAACTTCTGAGACCGAGACTACAGACGATGCTC
AGGGAAGCCCACCCCCACCCCCACCCCAACCCCCACCCCAACCCCCATCT
TCATCGAAACCAGACTGGTGTAAATGTTCGAAATGCAGAGACATGCCTAC
GTTAGTGGAGAACAAATGTTGCGGGCGTAAAAACTGCATAACATTGCATG
CAAAATTTGGTAAATTTTGTCTAGATAAGGACATCTTAATTTTGAATATA
AAAGCAAGAGCCGATATACGAGCTGAGCAAGTAAACGTTGAGAAGAACAA
ATTACGTAAAGCCTCGTATAGACAATTTATTCTTTGGAAACACGGTAGAT
TGGGAAGATACGAAAGGAGAGTCGCCCCATCATGTGTTGTGTTAGCAGTA
CGTAGAAAGTTCCCCAGTAGAGACGGCGTATACATGGGGTACAAGCCAAG
ATGACTCCAAGATCAAGATCCACAGCTAAATAAGCAGGCTAGCAATGCTG
ACGAATGGGACGATTATGAAAGCGAATTAAAAGGAGCAAATAAGAAGATA
CAAGAAAAGTGTTCTTGTGGGAAAAGAAAAAGAGGAGTGATTGTTGACCG
TTGCAAAAATAGAATCCAGCTTGCCGCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19846MSTRG.19846Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19846.1.p1.exon3MSTRG.19846.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19846.1.p1.exon2MSTRG.19846.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19846.1.p1.exon1MSTRG.19846.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19846.1.p1MSTRG.19846.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000233_pilongenomesc0000233_pilon:338562..339777 -