MSTRG.19835.4.p2 (mRNA) -

Overview
NameMSTRG.19835.4.p2
Unique NameMSTRG.19835.4.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000233_pilon:175038..180811+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19835.4.p2 ID=MSTRG.19835.4.p2|Name=MSTRG.19835.4.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5774bp|location=Sequence derived from alignment at sc0000233_pilon:175038..180811+ (Clytia hemisphaerica_ch_hm2_pilon)
ATAACCACAgttttatcttcgataattttgttcttttagttttcgttttt
ggaattttgttgGTTATATTATAGTCtataaaaatagcaaaatttgaaTT
ACAAGTAACATgttgaaagttgacaaaaattGATTGTATGGTCGAAAAAG
gacttttaaaatgaaatttaaaggttGGTATTACATGTGGCATGTTTCGA
TTATTAAGTGTTAATCTCTTATAACCCTGAAGCTAACCCTCTCTCGGGAG
AGATCTTAAGGAAGGAATCTTAAgaaattactcttaggtgccaaataaac
gccccccccccgcttgttaatctttcgaaaattttccaaccccgcccccg
gaccttattaggacccccccccccccccccccgttaccccgtttattaat
ttttagaaatattttcagctgtcaaagagaaggccccttatatttctcta
aatagcctgattttagcctatatttaccttattttttgggttttcagaag
tacaatttccaaccccccccccccggcaattaggtccccccgtttattaa
aatctcaaaaattttccccccgtttattcgaacctctCCCGTTTATTTGG
TACCTAAGAGTAGGTCATTTAGAAGGCGGCATCCTTCATTAAGCCAAAAA
GATCGGAACCGCACCATCACACAAAGAAAAACTCTGGTCATACAGCCCGC
TTGGGACCCCTCTTTAGATTCGAATTTGATTAAAGTAGTTCAATGCAGTG
ATctacaaccccttctcacagacccacttgaAAAATCGACTCAAATATCG
TCCCCAGAGCAAAGTTACACTCTCGTTacatttttgtccccattgaattt
tctggctcgaaaacaatggaattcaaatccccagcaaaaaaaacatggga
aagtacacgttttttttttattagaacacctaaaatttggctgagcttga
atgtgcttattttttttagcaattttcagcctaaaatgttcttaaatgcg
ttcttaatttttcagactactctaaatcgacaatatgatacaaaataaag
agcacttaaatttggcaaaatttggacaatattcgactctcgacttttga
agatccacccctaaattcggttaaaactgcttaaaaagagggaaaaattg
tagtttctcgtcatttttttccaaactgaggctgggcatgttcttaagat
gttcttaatttttcgacgaatttcagcctatatgttcttataagctaggt
tctaaaaaaaaaaacgtgtatccccatcaagttttggtccattattttta
cccccactggctgaaaaaaatcctaccgagtctgtgagaaggggatgtat
tACTATATCAAATTGTAACTTCAGTTTGTTGCTTGTTAGTGTGTCTATGT
TAGCTAATGCTTGAGCTTTCCGGGATGGGTTCGATTGAAGACCTCAGTCT
GATGCCCTGTTGATTAGTGCTCATCAatcaaaaagaaagataaagGGTAA
ATCGAGTAAATCACTCGCCTAGACGAGAATCAGTGTATTAATTTGTCTTT
TCATATTGCTTTACTTTCAGCTATCGCATTGATAGTGTTTGTAGCCATTC
AGCAATGTATTGGTGTGAAGAATCATCAAACTTTCTTCGGGATATACGGA
AAGTTTATCCCAGCCAATAACCAGGGTAGTGTTAAAGGTTCACAAAGAAA
CATTTTACCACGTGTCAATGGCGAAGAGGGAGGGGACGTTAAACTGACCC
TCGGCCCCGCCATAAAGCCCATCAAAACTCGCGATGGACCATTCCAACCG
AGTCAACAAGTCAGTGAGATCATTGGCCAAGTGATGCATTTCGACGAAAA
TATGTTAAACGGGCGTGGTCCATCTGTTGCTCGACATCACCCAGCACCCT
CCGCCCATCGAGAGGCGGAAGAAGATGAAGAGGAACAAACACCGCCCAAT
GATGAATTGGCGTCTGAACACGGACCAACTTCACAGGAAGAAACAATAGA
AAACGACGATTACAACAACGTGGAGAAAGAAGAGTACATCGCGAAAGGGC
GTGAAGAAAGCATGCATTTCTCAAAATTGTTAGACCAATTAGAAGATGAT
CCTGGACTTGGTAATTCACAGACCGGAAACTTAAAACCGACGCATAAGCT
TGAACAAGGTCGTCTGTACAATGGCTTCAAAGCAACGCCTAAATTAAAGC
ATCCTTTGATTCACCGTAAGAAAGGATGTACGGGGAAGAGATGTGATATA
GCAGGGGGATTTTTTGGCGCAACTGATGGACatttcgaaccaccaaatga
aGATGAAGTACCTTATGATGTAGGAGGTAATAGAACCATTATAATTTCGC
ATTGATTCAATAATCAATTAAATACGGTACAAACATAGGCCTTGTATGTT
CCTCATACATTTCTTACAAAACCTTATTACAACAAATCTGCAGACATGGT
GTAAGTACTGTGAAACGATATTGAAATAATTTCACTGTAAAATTCTTTGC
GTGTTTAAAACTTAAATACATGTTTTCTTTACGAATCTTTTGATTAAAAC
CACACCATTTCTTTTATTGCAGACACTCCAATCATTGGCGATGCAGAAGG
TCCGGTCCAAGATGAAGCTATGATGGCTGATACTTTATTTCACCTTCACA
AAGTGTATGACAAAGAGAAACAGGCCTTAGAATTGCTGGGCCACCATAAT
GGACATCACTTTCACCACGGATGTAAGTTTGGACATTTAAAGATAACCAT
CATCATGGCTCGACCAACAAGGCTTCTCAAAACATGAATGAAGTGTTCTA
AAAATTATTATGTTCTTCTTTGTAAAGCAGCTAAATTGAGTCTGGTAGAA
TTAAATCATATTGTCAAAGGACAgttcctttttaatttttagtggAAATT
AAAAGGTTAAGCGATAACGTTAGTTCTCCTTTAACGAATTCATTATTCCA
TTCTTCTCATTAGTTGGAGGTCATTACTACCATGAATTTCCACACCACGA
TGTCCATGACGCGCATGACGAACATCATCACACTCAAATGATCCCCATCG
GTATCGAACTACCTAATCACTTGCATTCTCCACAGAACTTTCGTCACCAT
GGTGGTGCTACCACTGTGGCTGGAGGTGCCGCTGGTGGAACTGTAGCAGG
CGGTGCTGCTGGTGGGACAGTAGGAGGTGGAGCAGCTGGAGGAGTTGCCG
GTGGAGGTGCACCCGGAGGAGTTGCTGGTGGAGCCGCTGGAGGAGTTGAA
GGTGGCGCTGCTGGCGGAGCCGCTGGAGGAGTTGAAGGGGCCGCTGGAGG
TGCAGCCggaggagtcgctggtggagccgctggaggagcagctggaggag
ttgaaggtggagctgctggaggagTTGAAGGTGGAGCTGCCGGAGGAGTT
GAAGGtggaGCTgctggcggaagtggagctggaggaagccgctggtggag
ctggagctgctggcggagTTGAAGgtggcgctgctggcggagtgctggag
ctgctgggaggaggctggaggagtctggtgaggtggaggcggatgctgga
ggagttgaaggtggagCCGCTGGCGGAGTTGAAGGTGGAGCTGCTGGAGG
TATCGAAGGTGGAGCTGCTGGAGGTATTGAAGGTGGAGCTGCTGGAGGTA
TCGAAGGTGGTGCTGCTGGGGGTACTGCTGGAGGGGCTGCCGGGGGAGCT
ACAGGTGGAATAGCTGGAGGTGCAGAAGGAGGGGCTGCGGTGGAGGTGGC
GCAGGAAGTGAAGCTGCAGCTGCTATTGGAGGAGAAGCTGGAGCGGCTGC
AGCTGGAGGAGCAGAGGCTGGCGGAGCAGCAGGCGGATCTGTAGGAGCTG
AAGAGGGAGCAAAAGAAGGGGCTTCTGAAGGTGCAGCGACTGGTGCAGCT
GAAGGGCGGCAGCAGGAGCAGCTGGCGGTGCAAGTACTGGGGCTGCAGAG
GGGGCTGTGGAAAAAGTGGCAGAGGCTGTTGCAAGTGGAGATGGTGATGA
TCCAGAAAAATTAGTGTCTGCAGCAAAAGAAGGCGCTTCAAAAGGAGCCG
CAGAGGGTGTTGCTACCGGGATATCAGAAGGTGCGAAACTCGGCGCAGAA
GCAGGAGCTGCTGCTGGTGGTTCACAAGGAGGAGCTGCAGGTGCAGCTGA
AGGATCTATCCAAGGAAATGCAGCAGGAGTAACTGGGGCGATGTCGGGAG
GAGCAGAAGGAGGTGCAGCAGTCGGGGAGCAGCTGGAGGTGAAGCAGGTG
GCCAGGCTGGTGGAGCGATCGGTGCTTCTGCGGGAGGCGCCGCTGGTGCT
GCGGTGGGTGCGGCAGCAGGAGAAGCAGCCGGTGGTGCAGTTGTTTCAGC
TGGAAAGTTATCTGGAAAAGTAGAAGGCTCCGCAGCAAAGGGAGCAGCTA
AGCTAGCAGGTGCAGCTGGTGCTATGCAAGCATCAGGAGCTGCACAGACT
GCTGGTGCTTTGGGTGCAGCTGGAGCCGCTGAAAGTGCAGGGATAgcagg
tggtgcagctggtatggctgcaggtggaggaggtgctgcggcagcTGGtg
gtggtggtggtTCGATTGCAGGAGGAGGAGCTATGGCTGCTGGCGGTGCA
GCTGGTGGCTCGATGAAAATTGGGGGAGGGATCACAGGAGGTGCAGCAGG
AGCATTGAAAGCTTCAGGAACCGCAGGTGGAGGAGGTAGTATGAAGATTG
GAGGTGGTATGGCAGGTGCAGCTGGAGGAAGTGCAGGAATATCAGGAGGT
GCTGGAGGTTCACTTAAGATTGGAGGTGGGATGGCAGGTGCAGCTGGAGG
AAGTGCAGGAATATCAGGAGGCGCTGGAGGTTCGCTGAAGATTGGAGGTG
GGATGAAAGCGTCAGGAGCTATATCAGGTGGTATATCAGGTGGCGGCGGG
TTAAGTGTTGGTGGTGGTGGTGCCATGAAAATTGGAGGCGGCGGTGGGTT
GAAGGTTGGTGGTGGAGGGGCAATGAAGATGGCCGGAGGAGCGGCTGCTG
GGCTGAAAGCGGCAGGTGGCGCAGGGGGTGCTATGGCGGCAGGAGGTGGA
AGTTCTTCATCGTGGAGTTCAAGCTACGGTTCAAAGACAGGAGGATATGG
ACGAACCATTGATGAGGATGAAGACAAGAAAGAATCGATGAAGAAATTAT
CACTGAGTGATGTTTGGTCACGAAAGATCGTCGCATTGAAAGCGAGAGGA
AGCGAAGCAAATTTTGTACCCAAAATTGTCACTAGCGGAGGAATCCCTGG
CGAAACCGTAAAGATTCGTAAACCAGCAATGACCAAGAAGTTTGTACATT
TAATGGAGGATCTGGCTGGTAAATTAGCTGTCAATAAACTGAACGTAGCa
gaagaatttgtgaaaaatttgaagaagaagaaagaagaggaagTTTATGA
ATCGATAGGTGTTACCAGATCTCTTaaaagtaaatcgaaaatattttcag
caaaaaacgcagtcaaaaaacatttcattaaaaagttgaCAACgaataac
aataacaaacatcATAAGAGAGCCGTTAAAAAGTCCAAAGTCAACGTTGG
AAATGCTCTCTAGAAGTGATTTACTTCGATTTATAGGACAGtttttggta
ttgttttttttcaattaggtattttttgtgacaatttcattccctttttt
GGTAAATATTGTATAATAAAGAATTAAACCAATaaaccaaatcaaaattt
ctatCTACCGTATCGGCCCTTTAGTCTGGCCGAAATACAATAAAACAGGG
GTGAACGTAGAAAATAATTCCGCG

Coding sequence (CDS) from alignment at sc0000233_pilon:175038..180811+

>MSTRG.19835.4.p2 ID=MSTRG.19835.4.p2|Name=MSTRG.19835.4.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2136bp|location=Sequence derived from alignment at sc0000233_pilon:175038..180811+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCAAGCATCAGGAGCTGCACAGACTGCTGGTGCTTTGGGTGCAGCTGG
AGCCGCTGAAAGTGCAGGGATAgcaggtggtgcagctggtatggctgcag
gtggaggaggtgctgcggcagcTGGtggtggtggtggtTCGATTGCAGGA
GGAGGAGCTATGGCTGCTGGCGGTGCAGCTGGTGGCTCGATGAAAATTGG
GGGAGGGATCACAGGAGGTGCAGCAGGAGCATTGAAAGCTTCAGGAACCG
CAGGTGGAGGAGGTAGTATGAAGATTGGAGGTGGTATGGCAGGTGCAGCT
GGAGGAAGTGCAGGAATATCAGGAGGTGCTGGAGGTTCACTTAAGATTGG
AGGTGGGATGAAAGCGTCAGGAGCTATATCAGGTGGTATATCAGGTGGCG
GCGGGTTAAGTGTTGGTGGTGGTGGTGCCATGAAAATTGGAGGCGGCGGT
GGGTTGAAGGTTGGTGGTGGAGGGGCAATGAAGATGGCCGGAGGAGCGGC
TGCTGGGCTGAAAGCGGCAGGTGGCGCAGGGGGTGCTATGGCGGCAGGAG
GTGGAAGTTCTTCATCGTGGAGTTCAAGCTACGGTTCAAAGACAGGAGGA
TATGGACGAACCATTGATGAGGATGAAGACAAGAAAGAATCGATGAAGAA
ATTATCACTGAGTGATGTTTGGTCACGAAAGATCGTCGCATTGAAAGCGA
GAGGAAGCGAAGCAAATTTTGTACCCAAAATTGTCACTAGCGGAGGAATC
CCTGGCGAAACCGTAAAGATTCGTAAACCAGCAATGACCAAGAAGTTTGT
ACATTTAATGGAGGATCTGGCTGGTAAATTAGCTGTCAATAAACTGAACG
TAGCagaagaatttgtgaaaaatttgaagaagaagaaagaagaggaagTT
TATGAATCGATAGGTGTTACCAGATCTCTTaaaagtaaatcgaaaatatt
ttcagcaaaaaacgcagtcaaaaaacatttcattaaaaagttgaCAACga
ataacaataacaaacatcATAAGAGAGCCGTTAAAAAGTCCAAAGTCAAC
GTTGGAAATGCTCTCTAGATGCAAGCATCAGGAGCTGCACAGACTGCTGG
TGCTTTGGGTGCAGCTGGAGCCGCTGAAAGTGCAGGGATAgcaggtggtg
cagctggtatggctgcaggtggaggaggtgctgcggcagcTGGtggtggt
ggtggtTCGATTGCAGGAGGAGGAGCTATGGCTGCTGGCGGTGCAGCTGG
TGGCTCGATGAAAATTGGGGGAGGGATCACAGGAGGTGCAGCAGGAGCAT
TGAAAGCTTCAGGAACCGCAGGTGGAGGAGGTAGTATGAAGATTGGAGGT
GGTATGGCAGGTGCAGCTGGAGGAAGTGCAGGAATATCAGGAGGTGCTGG
AGGTTCACTTAAGATTGGAGGTGGGATGAAAGCGTCAGGAGCTATATCAG
GTGGTATATCAGGTGGCGGCGGGTTAAGTGTTGGTGGTGGTGGTGCCATG
AAAATTGGAGGCGGCGGTGGGTTGAAGGTTGGTGGTGGAGGGGCAATGAA
GATGGCCGGAGGAGCGGCTGCTGGGCTGAAAGCGGCAGGTGGCGCAGGGG
GTGCTATGGCGGCAGGAGGTGGAAGTTCTTCATCGTGGAGTTCAAGCTAC
GGTTCAAAGACAGGAGGATATGGACGAACCATTGATGAGGATGAAGACAA
GAAAGAATCGATGAAGAAATTATCACTGAGTGATGTTTGGTCACGAAAGA
TCGTCGCATTGAAAGCGAGAGGAAGCGAAGCAAATTTTGTACCCAAAATT
GTCACTAGCGGAGGAATCCCTGGCGAAACCGTAAAGATTCGTAAACCAGC
AATGACCAAGAAGTTTGTACATTTAATGGAGGATCTGGCTGGTAAATTAG
CTGTCAATAAACTGAACGTAGCagaagaatttgtgaaaaatttgaagaag
aagaaagaagaggaagTTTATGAATCGATAGGTGTTACCAGATCTCTTaa
aagtaaatcgaaaatattttcagcaaaaaacgcagtcaaaaaacatttca
ttaaaaagttgaCAACgaataacaataacaaacatcATAAGAGAGCCGTT
AAAAAGTCCAAAGTCAACGTTGGAAATGCTCTCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19835MSTRG.19835Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19835.4.p2MSTRG.19835.4.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19835.4.p2.exon1MSTRG.19835.4.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19835.4.p2.exon2MSTRG.19835.4.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19835.4.p2.exon3MSTRG.19835.4.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19835.4.p2.exon4MSTRG.19835.4.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19835.4.p2.exon5MSTRG.19835.4.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19835.4.p2.exon6MSTRG.19835.4.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000233_pilongenomesc0000233_pilon:175038..180811 +