MSTRG.19835.11.p2 (mRNA) -

Overview
NameMSTRG.19835.11.p2
Unique NameMSTRG.19835.11.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000233_pilon:175091..180811+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19835.11.p2 ID=MSTRG.19835.11.p2|Name=MSTRG.19835.11.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5721bp|location=Sequence derived from alignment at sc0000233_pilon:175091..180811+ (Clytia hemisphaerica_ch_hm2_pilon)
attttgttgGTTATATTATAGTCtataaaaatagcaaaatttgaaTTACA
AGTAACATgttgaaagttgacaaaaattGATTGTATGGTCGAAAAAGgac
ttttaaaatgaaatttaaaggttGGTATTACATGTGGCATGTTTCGATTA
TTAAGTGTTAATCTCTTATAACCCTGAAGCTAACCCTCTCTCGGGAGAGA
TCTTAAGGAAGGAATCTTAAgaaattactcttaggtgccaaataaacgcc
ccccccccgcttgttaatctttcgaaaattttccaaccccgcccccggac
cttattaggacccccccccccccccccccgttaccccgtttattaatttt
tagaaatattttcagctgtcaaagagaaggccccttatatttctctaaat
agcctgattttagcctatatttaccttattttttgggttttcagaagtac
aatttccaaccccccccccccggcaattaggtccccccgtttattaaaat
ctcaaaaattttccccccgtttattcgaacctctCCCGTTTATTTGGTAC
CTAAGAGTAGGTCATTTAGAAGGCGGCATCCTTCATTAAGCCAAAAAGAT
CGGAACCGCACCATCACACAAAGAAAAACTCTGGTCATACAGCCCGCTTG
GGACCCCTCTTTAGATTCGAATTTGATTAAAGTAGTTCAATGCAGTGATc
tacaaccccttctcacagacccacttgaAAAATCGACTCAAATATCGTCC
CCAGAGCAAAGTTACACTCTCGTTacatttttgtccccattgaattttct
ggctcgaaaacaatggaattcaaatccccagcaaaaaaaacatgggaaag
tacacgttttttttttattagaacacctaaaatttggctgagcttgaatg
tgcttattttttttagcaattttcagcctaaaatgttcttaaatgcgttc
ttaatttttcagactactctaaatcgacaatatgatacaaaataaagagc
acttaaatttggcaaaatttggacaatattcgactctcgacttttgaaga
tccacccctaaattcggttaaaactgcttaaaaagagggaaaaattgtag
tttctcgtcatttttttccaaactgaggctgggcatgttcttaagatgtt
cttaatttttcgacgaatttcagcctatatgttcttataagctaggttct
aaaaaaaaaaacgtgtatccccatcaagttttggtccattatttttaccc
ccactggctgaaaaaaatcctaccgagtctgtgagaaggggatgtattAC
TATATCAAATTGTAACTTCAGTTTGTTGCTTGTTAGTGTGTCTATGTTAG
CTAATGCTTGAGCTTTCCGGGATGGGTTCGATTGAAGACCTCAGTCTGAT
GCCCTGTTGATTAGTGCTCATCAatcaaaaagaaagataaagGGTAAATC
GAGTAAATCACTCGCCTAGACGAGAATCAGTGTATTAATTTGTCTTTTCA
TATTGCTTTACTTTCAGCTATCGCATTGATAGTGTTTGTAGCCATTCAGC
AATGTATTGGTGTGAAGAATCATCAAACTTTCTTCGGGATATACGGAAAG
TTTATCCCAGCCAATAACCAGGGTAGTGTTAAAGGTTCACAAAGAAACAT
TTTACCACGTGTCAATGGCGAAGAGGGAGGGGACGTTAAACTGACCCTCG
GCCCCGCCATAAAGCCCATCAAAACTCGCGATGGACCATTCCAACCGAGT
CAACAAGTCAGTGAGATCATTGGCCAAGTGATGCATTTCGACGAAAATAT
GTTAAACGGGCGTGGTCCATCTGTTGCTCGACATCACCCAGCACCCTCCG
CCCATCGAGAGGCGGAAGAAGATGAAGAGGAACAAACACCGCCCAATGAT
GAATTGGCGTCTGAACACGGACCAACTTCACAGGAAGAAACAATAGAAAA
CGACGATTACAACAACGTGGAGAAAGAAGAGTACATCGCGAAAGGGCGTG
AAGAAAGCATGCATTTCTCAAAATTGTTAGACCAATTAGAAGATGATCCT
GGACTTGGTAATTCACAGACCGGAAACTTAAAACCGACGCATAAGCTTGA
ACAAGGTCGTCTGTACAATGGCTTCAAAGCAACGCCTAAATTAAAGCATC
CTTTGATTCACCGTAAGAAAGGATGTACGGGGAAGAGATGTGATATAGCA
GGGGGATTTTTTGGCGCAACTGATGGACatttcgaaccaccaaatgaaGA
TGAAGTACCTTATGATGTAGGAGGTAATAGAACCATTATAATTTCGCATT
GATTCAATAATCAATTAAATACGGTACAAACATAGGCCTTGTATGTTCCT
CATACATTTCTTACAAAACCTTATTACAACAAATCTGCAGACATGGTGTA
AGTACTGTGAAACGATATTGAAATAATTTCACTGTAAAATTCTTTGCGTG
TTTAAAACTTAAATACATGTTTTCTTTACGAATCTTTTGATTAAAACCAC
ACCATTTCTTTTATTGCAGACACTCCAATCATTGGCGATGCAGAAGGTCC
GGTCCAAGATGAAGCTATGATGGCTGATACTTTATTTCACCTTCACAAAG
TGTATGACAAAGAGAAACAGGCCTTAGAATTGCTGGGCCACCATAATGGA
CATCACTTTCACCACGGATGTAAGTTTGGACATTTAAAGATAACCATCAT
CATGGCTCGACCAACAAGGCTTCTCAAAACATGAATGAAGTGTTCTAAAA
ATTATTATGTTCTTCTTTGTAAAGCAGCTAAATTGAGTCTGGTAGAATTA
AATCATATTGTCAAAGGACAgttcctttttaatttttagtggAAATTAAA
AGGTTAAGCGATAACGTTAGTTCTCCTTTAACGAATTCATTATTCCATTC
TTCTCATTAGTTGGAGGTCATTACTACCATGAATTTCCACACCACGATGT
CCATGACGCGCATGACGAACATCATCACACTCAAATGATCCCCATCGGTA
TCGAACTACCTAATCACTTGCATTCTCCACAGAACTTTCGTCACCATGGT
GGTGCTACCACTGTGGCTGGAGGTGCCGCTGGTGGAACTGTAGCAGGCGG
TGCTGCTGGTGGGACAGTAGGAGGTGGAGCAGCTGGAGGAGTTGCCGGTG
GAGGTGCACCCGGAGGAGTTGCTGGTGGAGCCGCTGGAGGAGTTGAAGGT
GGCGCTGCTGGCGGAGCCGCTGGAGGAGTTGAAGGGGCCGCTGGAGGTGC
AGCCggaggagtcgctggtggagccgctggaggagcagctggaggagttg
aaggtggagctgctggaggagTTGAAGGTGGAGCTGCCGGAGGAGTTGAA
GGtggaGCTgctggcggaagtggagctggaggaagccgctggtggagctg
gagctgctggcggagTTGAAGgtggcgctgctggcggagtgctggagctg
ctgggaggaggctggaggagtctggtgaggtggaggcggatgctggagga
gttgaaggtggagCCGCTGGCGGAGTTGAAGGTGGAGCTGCTGGAGGTAT
CGAAGGTGGAGCTGCTGGAGGTATTGAAGGTGGAGCTGCTGGAGGTATCG
AAGGTGGTGCTGCTGGGGGTACTGCTGGAGGGGCTGCCGGGGGAGCTACA
GGTGGAATAGCTGGAGGTGCAGAAGGAGGGGCTGCGGTGGAGGTGGCGCA
GGAAGTGAAGCTGCAGCTGCTATTGGAGGAGAAGCTGGAGCGGCTGCAGC
TGGAGGAGCAGAGGCTGGCGGAGCAGCAGGCGGATCTGTAGGAGCTGAAG
AGGGAGCAAAAGAAGGGGCTTCTGAAGGTGCAGCGACTGGTGCAGCTGAA
GGGCGGCAGCAGGAGCAGCTGGCGGTGCAAGTACTGGGGCTGCAGAGGGG
GCTGTGGAAAAAGTGGCAGAGGCTGTTGCAAGTGGAGATGGTGATGATCC
AGAAAAATTAGTGTCTGCAGCAAAAGAAGGCGCTTCAAAAGGAGCCGCAG
AGGGTGTTGCTACCGGGATATCAGAAGGTGCGAAACTCGGCGCAGAAGCA
GGAGCTGCTGCTGGTGGTTCACAAGGAGGAGCTGCAGGTGCAGCTGAAGG
ATCTATCCAAGGAAATGCAGCAGGAGTAACTGGGGCGATGTCGGGAGGAG
CAGAAGGAGGTGCAGCAGTCGGGGAGCAGCTGGAGGTGAAGCAGGTGGCC
AGGCTGGTGGAGCGATCGGTGCTTCTGCGGGAGGCGCCGCTGGTGCTGCG
GTGGGTGCGGCAGCAGGAGAAGCAGCCGGTGGTGCAGTTGTTTCAGCTGG
AAAGTTATCTGGAAAAGTAGAAGGCTCCGCAGCAAAGGGAGCAGCTAAGC
TAGCAGGTGCAGCTGGTGCTATGCAAGCATCAGGAGCTGCACAGACTGCT
GGTGCTTTGGGTGCAGCTGGAGCCGCTGAAAGTGCAGGGATAgcaggtgg
tgcagctggtatggctgcaggtggaggaggtgctgcggcagcTGGtggtg
gtggtggtTCGATTGCAGGAGGAGGAGCTATGGCTGCTGGCGGTGCAGCT
GGTGGCTCGATGAAAATTGGGGGAGGGATCACAGGAGGTGCAGCAGGAGC
ATTGAAAGCTTCAGGAACCGCAGGTGGAGGAGGTAGTATGAAGATTGGAG
GTGGTATGGCAGGTGCAGCTGGAGGAAGTGCAGGAATATCAGGAGGTGCT
GGAGGTTCACTTAAGATTGGAGGTGGGATGGCAGGTGCAGCTGGAGGAAG
TGCAGGAATATCAGGAGGCGCTGGAGGTTCGCTGAAGATTGGAGGTGGGA
TGAAAGCGTCAGGAGCTATATCAGGTGGTATATCAGGTGGCGGCGGGTTA
AGTGTTGGTGGTGGTGGTGCCATGAAAATTGGAGGCGGCGGTGGGTTGAA
GGTTGGTGGTGGAGGGGCAATGAAGATGGCCGGAGGAGCGGCTGCTGGGC
TGAAAGCGGCAGGTGGCGCAGGGGGTGCTATGGCGGCAGGAGGTGGAAGT
TCTTCATCGTGGAGTTCAAGCTACGGTTCAAAGACAGGAGGATATGGACG
AACCATTGATGAGGATGAAGACAAGAAAGAATCGATGAAGAAATTATCAC
TGAGTGATGTTTGGTCACGAAAGATCGTCGCATTGAAAGCGAGAGGAAGC
GAAGCAAATTTTGTACCCAAAATTGTCACTAGCGGAGGAATCCCTGGCGA
AACCGTAAAGATTCGTAAACCAGCAATGACCAAGAAGTTTGTACATTTAA
TGGAGGATCTGGCTGGTAAATTAGCTGTCAATAAACTGAACGTAGCagaa
gaatttgtgaaaaatttgaagaagaagaaagaagaggaagTTTATGAATC
GATAGGTGTTACCAGATCTCTTaaaagtaaatcgaaaatattttcagcaa
aaaacgcagtcaaaaaacatttcattaaaaagttgaCAACgaataacaat
aacaaacatcATAAGAGAGCCGTTAAAAAGTCCAAAGTCAACGTTGGAAA
TGCTCTCTAGAAGTGATTTACTTCGATTTATAGGACAGtttttggtattg
ttttttttcaattaggtattttttgtgacaatttcattcccttttttGGT
AAATATTGTATAATAAAGAATTAAACCAATaaaccaaatcaaaatttcta
tCTACCGTATCGGCCCTTTAGTCTGGCCGAAATACAATAAAACAGGGGTG
AACGTAGAAAATAATTCCGCG

Coding sequence (CDS) from alignment at sc0000233_pilon:175091..180811+

>MSTRG.19835.11.p2 ID=MSTRG.19835.11.p2|Name=MSTRG.19835.11.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2136bp|location=Sequence derived from alignment at sc0000233_pilon:175091..180811+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCAAGCATCAGGAGCTGCACAGACTGCTGGTGCTTTGGGTGCAGCTGG
AGCCGCTGAAAGTGCAGGGATAgcaggtggtgcagctggtatggctgcag
gtggaggaggtgctgcggcagcTGGtggtggtggtggtTCGATTGCAGGA
GGAGGAGCTATGGCTGCTGGCGGTGCAGCTGGTGGCTCGATGAAAATTGG
GGGAGGGATCACAGGAGGTGCAGCAGGAGCATTGAAAGCTTCAGGAACCG
CAGGTGGAGGAGGTAGTATGAAGATTGGAGGTGGTATGGCAGGTGCAGCT
GGAGGAAGTGCAGGAATATCAGGAGGTGCTGGAGGTTCACTTAAGATTGG
AGGTGGGATGAAAGCGTCAGGAGCTATATCAGGTGGTATATCAGGTGGCG
GCGGGTTAAGTGTTGGTGGTGGTGGTGCCATGAAAATTGGAGGCGGCGGT
GGGTTGAAGGTTGGTGGTGGAGGGGCAATGAAGATGGCCGGAGGAGCGGC
TGCTGGGCTGAAAGCGGCAGGTGGCGCAGGGGGTGCTATGGCGGCAGGAG
GTGGAAGTTCTTCATCGTGGAGTTCAAGCTACGGTTCAAAGACAGGAGGA
TATGGACGAACCATTGATGAGGATGAAGACAAGAAAGAATCGATGAAGAA
ATTATCACTGAGTGATGTTTGGTCACGAAAGATCGTCGCATTGAAAGCGA
GAGGAAGCGAAGCAAATTTTGTACCCAAAATTGTCACTAGCGGAGGAATC
CCTGGCGAAACCGTAAAGATTCGTAAACCAGCAATGACCAAGAAGTTTGT
ACATTTAATGGAGGATCTGGCTGGTAAATTAGCTGTCAATAAACTGAACG
TAGCagaagaatttgtgaaaaatttgaagaagaagaaagaagaggaagTT
TATGAATCGATAGGTGTTACCAGATCTCTTaaaagtaaatcgaaaatatt
ttcagcaaaaaacgcagtcaaaaaacatttcattaaaaagttgaCAACga
ataacaataacaaacatcATAAGAGAGCCGTTAAAAAGTCCAAAGTCAAC
GTTGGAAATGCTCTCTAGATGCAAGCATCAGGAGCTGCACAGACTGCTGG
TGCTTTGGGTGCAGCTGGAGCCGCTGAAAGTGCAGGGATAgcaggtggtg
cagctggtatggctgcaggtggaggaggtgctgcggcagcTGGtggtggt
ggtggtTCGATTGCAGGAGGAGGAGCTATGGCTGCTGGCGGTGCAGCTGG
TGGCTCGATGAAAATTGGGGGAGGGATCACAGGAGGTGCAGCAGGAGCAT
TGAAAGCTTCAGGAACCGCAGGTGGAGGAGGTAGTATGAAGATTGGAGGT
GGTATGGCAGGTGCAGCTGGAGGAAGTGCAGGAATATCAGGAGGTGCTGG
AGGTTCACTTAAGATTGGAGGTGGGATGAAAGCGTCAGGAGCTATATCAG
GTGGTATATCAGGTGGCGGCGGGTTAAGTGTTGGTGGTGGTGGTGCCATG
AAAATTGGAGGCGGCGGTGGGTTGAAGGTTGGTGGTGGAGGGGCAATGAA
GATGGCCGGAGGAGCGGCTGCTGGGCTGAAAGCGGCAGGTGGCGCAGGGG
GTGCTATGGCGGCAGGAGGTGGAAGTTCTTCATCGTGGAGTTCAAGCTAC
GGTTCAAAGACAGGAGGATATGGACGAACCATTGATGAGGATGAAGACAA
GAAAGAATCGATGAAGAAATTATCACTGAGTGATGTTTGGTCACGAAAGA
TCGTCGCATTGAAAGCGAGAGGAAGCGAAGCAAATTTTGTACCCAAAATT
GTCACTAGCGGAGGAATCCCTGGCGAAACCGTAAAGATTCGTAAACCAGC
AATGACCAAGAAGTTTGTACATTTAATGGAGGATCTGGCTGGTAAATTAG
CTGTCAATAAACTGAACGTAGCagaagaatttgtgaaaaatttgaagaag
aagaaagaagaggaagTTTATGAATCGATAGGTGTTACCAGATCTCTTaa
aagtaaatcgaaaatattttcagcaaaaaacgcagtcaaaaaacatttca
ttaaaaagttgaCAACgaataacaataacaaacatcATAAGAGAGCCGTT
AAAAAGTCCAAAGTCAACGTTGGAAATGCTCTCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19835MSTRG.19835Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19835.11.p2MSTRG.19835.11.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19835.11.p2.exon1MSTRG.19835.11.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19835.11.p2.exon2MSTRG.19835.11.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19835.11.p2.exon3MSTRG.19835.11.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19835.11.p2.exon4MSTRG.19835.11.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19835.11.p2.exon5MSTRG.19835.11.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19835.11.p2.exon6MSTRG.19835.11.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000233_pilongenomesc0000233_pilon:175091..180811 +