MSTRG.19683.1.p1 (mRNA) -

Overview
NameMSTRG.19683.1.p1
Unique NameMSTRG.19683.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000228_pilon:381600..388238+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19683.1.p1 ID=MSTRG.19683.1.p1|Name=MSTRG.19683.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6639bp|location=Sequence derived from alignment at sc0000228_pilon:381600..388238+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTCTATCCATCCATAGATTACCATACGCCACCATTTTCGGAGGTGTAGG
TGCATTCACAAAAGAGGACTTTCAACGTATCAATGGATTCTCCAATATGT
TTTGGGGATGGGGTGGAGAAGATGATGATCTATACACAAGGTGAGCAAAC
AGCATTGAGTATTTGTCTACTCCGCAAAGCATGGtggggggttacaccct
aaatatttcccaaaaaaggagggggctggaagtacaccacaTTTTTGGGG
GAACCTATGTACTttgggggagctaaaatctcatcgcttaacgtgggggc
taaaataattcagcttaatagttggcttcatgaatctgaaaaattttccc
ctGCGGCGCAATATTTTTATACAAGGTGTgctaaatattttatcttaaac
ttagaaTTGAACGCAATTTACATCGGAAAACCCTGTTTTACtgggtcaat
tttttgaaagtgtctagggtcaaaagtcctgggggctaacaaaaaattca
taaatctttgggggacTTTAAACTcaggggacctaatttttgcctgggac
ctaaacccaggctgacgctatgctTCGTCAGAAATGGTCGAGGAGTGATA
TCTAGGACTTAATGGAAGTTGAAAATTGCACCTCAAAGGTCCAGGTTTTA
GCCCTTAAGATATCCTGTATACGAACGGTAACGATAGATAAGAAAGGCTA
GAGATGTCCTAAGGTAGGTGTCATGTCCAGTAGCGTGTTGGGTCGACAAA
AATTcggcaaactggggaggcaatttccgaaaattttgattttggcgccc
cctattAAAAGTAAATACCTTTGTACAGATTATGCGTGGGAAGCGAGCAC
AAAATTTTCTGGGtactttctctctttttggttGAAAACTGCCAATTCTA
AGGTtcaaataaaccagccgaggctggaaggtcagccaatagagcttagc
tagatagctttaataagtgggttaacagatgtaagagatgtactgaaaca
gagtagagtaaaaattttgaataatgtacaaaatgtgaaacatttgataa
cttgatttaaaattatttaaaacaagcctgagagctcctccaaccccccc
cccccccacacgagaagatcaaagtatacttctctttagcattgtagcac
tgtttctatgacatcaaacaaaagCTATAATTCATTAATGAATTTGGGCA
ATCGCTTTGACGCCTTGGCGGAATtaacacacaaccataataaataaatt
caacagggcagcggagtagcaattaatttcaactgggagtcctctcttct
gtgccaagcactggcagtgttttttaaactttaaaacaatgttaaatgaa
gaccagatggatctgtttgttatggctgtgcaagttgtgatgAGAGtttg
catgttgtgtaactggATGgtgtaattcattaaattctagaaaccatttt
tcataactttccgtcattcagtcaaaacgtgcgccaaggttagaaaaggt
tagaaaaacactatctgcgtccggaactgcgtgaaaaataggtTGATCAG
ACAAGAACTGTAtacattaatattaatataattgatcaaattccaaagac
catttgtcataattttgcaagtccaataataggagatgtgatgtcatcat
ttggttcccgtcatctgaccgaccctgatttacggtcagcaggtggagtt
ggagagtcggaaagcttttccgctgctttgctggatttccactgtcgacc
cccgcacgctctgtgtttacaagttttcaaatcgaagtagcgagccgcat
gctaatggagagtaaaccgaaaaccagtttattcactctttctcaatttc
ttaattcggatcagtccacacggattccctttcaacaagatgtagctgct
tcttaaaagaaaaatattttcgaccgaccgaccgaatgaCCCCCaccttt
taaagtagaaatgacgggaaccaaacaatttttatcaaacacgtccaaac
caagtccaaaattaagcacgattgcatccagtctttatcaaacttagaca
gtagctgtacttttgtaaactttatcaaattccaataacattataacaca
atcaatcccacctagaggcaaacaaatATGtctttattgcaaaaactaat
aaaaagcagcaataaaaagtatcagaaaattcaacataaacaaaaacttg
agcaaaaggctttaaaccttcaaaagatgtagaaaaagaatccccttgat
gaaaatcatgtgtttgatttgccgagttaaaaaaataaatgacagaaatt
gaagcttgcaacagatttacactggaaatactttggcacaacactgactt
atcacatctgacttatcgccatcttgaaacaccactaaaagtacccaaaa
agttaacccgatatcggaagaaagtttagaaatcaaagtgagatcgggaa
atcggatttttttttgccgtcttatggaacTGGAAGtggtggaagaaaat
tttacctatttgaatgctcagcttaggctgaccaaaaagcaaaggggcgc
cgaaattagtaataaGAGACGTCTTTTTTCGCCATTTGCGTTTTGGCGCC
CCTCaaaaaaaTCGCCCGCTGGGGgtgccccccctgccaccacgctactg
gtcATGTCTCCtgtattcttttatttttgcagggaacattgtaaatattt
tattcatttaaGCTCCTCCGATTCGTGACTTAAATctgtttaaatttgtt
ttttagaatcaCCAAAGTTGGATTCAAATTGACCAGACCATCATTAAAGC
GTGGTCGTTATACGATGATTAGAATCCATCATTTCCAGAGCTCAAAGGCC
GATCCTAACAGGTGAGGATggtattttttggcgattttttttattttact
tcttggtacttttttCATGTGAGCAGTAATGAGGTAATCTACTTTTCAAG
CATTATAAACGGAATCATGCATGTGCTTCACTTACAGAACTGGCGTCAAG
GCTAGGTCGATCACGACCTACCAAAATATACTTCAAATGTTTCCTCTTAG
GGAGAAAACTTCTAACCACTAGTCTAGCAAGTTAGACGACTAAATTCAGA
CACAGtagaaataaagtaaaaagcaatggagggaacaaatttttatacaa
actaaatcccgtaacaataatcgtattatcatccAATAACATCTATACTA
CTTTATTACGAATTacaaacgactccagtctaataaCCACTAATAACTCA
ACTTTCTATCTTCCGATTTCAGGATGAACTTGTTGAGAAACTCAGCTCAA
AGAATGTCAGCGGACGGACTAAACACATTGAAATATAAATTGGACAAAGT
GGACCAACAACCTCTTGTGACATTCGTCAAAATCGAATTGAAGAGAAGCA
TGTACTCAAAATAGATGTCCGGACGGAAAGAGGTCAAGGTAATTACCACT
TACCTTTCTTTATGGTTGAATAGGAAAAAACCtacccaactggcacacaa
cactctttcaacgttcatctaacgttatttggacgttatgaacattagat
gaacgttgaaacaacggtgtgtgccagctgggtacggATCTACGCatgtt
tgaaaatgaaaatcgaaaagAAGAGATGCAGTTTATTGACACAAAACAAA
GAGTGCACACCCCTTACATATATACGGATATAGATTCATACTCATTCATA
CAATTTCTTAGCTAGTACTTAGCTCTGGATTATACATTCATTCATGGCTG
AACCTTTATACATATTGAGATGATGGAAGAAGACCATTTTCCATGGACTT
GTTTTACCCTGAAAGGTTCAAAAATAGCAGTTTTTGATTCCTTCTCGGAT
CACTTATTGGAATATTTCAGAGACTTTTTAATGttgagaaagttgttttt
aaaatgattaaaaaaaataatttatttgacagatttaattattttgagat
tttatgattgagatttttatttagacttaaaagatcttattttaatatat
ttccattttcaaactATATATGTTTTCTGGTTTGATAAGATTGTAATATC
GGGTGTCTAACTCTcgttattttcttttatttgattgGATACAATTTCTA
TAATACAATGTTCCTAGaaaaaaaTGGGTTTGGAATTTAAAAGAGAGCTA
TAATTCATGACAAGTTTTGATTGAATTCCTTCGAATCCTAATTCAGTTTC
CTTAGGGATTAAAGATAATTTAATCGGACAAAAAGACTTAACACTGCACT
CTACAGATAGTGattaaaggttttctacgggaataaaaggagcttatttt
aggcagtgtctACATGCTGAgtattcaatgtattttcattttttcaaaac
ctttttttaatcttgtcgcacttgtttttactacatcagcatcatcagac
ctttcaatcaaaacaaaacctttaagtcgggagtttctaaacgtcaatca
gaaatgacgaccacgaccagcgaccagaaaAATTTGGGTTATTGAGTTTT
TTCcctttctccaacgtagagtgtctctTCTAATCATTTCAATATaatat
tgaagagtaagctcacccctgtctcatctattTAAAGCCACGTGCCAAAT
ACGTAAAACAGCCATTTCGACGCTCTTTGAGCTTGATTATTGTGCCAATT
Tcgatccttttgtattatcagcatcaaaataattagtggcatcaattatt
ttgaaatttgtttgagaagctttgtatttcatcatcagattgttatttct
gtcgaaattagtcattttgtcagcataaagacaatagaataattgattag
attcatatctctaaaactggccttccaaattttttcctactgacaagttc
tatctattcatgCTAAAGGCATCCCATTCAgctatctggtcgccggtcgt
ggtcggtGGTCGTGACCGCCATTTCTAGttgatgtttagaaactcccctt
tAAGTCTTATCCCAGTAATGAACATTAACGCCGTGTTAAGACTAAAGTTT
AAGGCGTGGTTACggcctttttttagtttttgatttttgttatcTCTTCA
tgctttttctcaacttcagttgagttagaatctgagaatgtctgtgtgtg
tgtctgtgtgtgtgtctgtcaccaaaactttggggcagcctggagacttc
aaaattggtccgatttggctgaaattttgcacacttgatccttaggcaaa
tccctgggggtgtttttttcattttttcaaaattttaatttttggggcct
ggtgacgagtttttcgccaaaacgaggctaaaactttggggcaggctgga
gacttcaaaaatggtccgattgggctgaaattttgcacacttgatcctta
ggcaaatccctgggggtgtttttttcattttttcaaaattttaatttttg
gggcctggggacgagtttttcgccaaaacgaggctaaaaccttggggcag
gctggagacttcaaaaatggtccgattgggctgaaattttgcacacttga
tccttgggcaaatccctgggggcatttttttcattgtttcaaaattttaa
tttttggggcctggggacgagtttttttttcgccaaaacgaggctaaaac
tttggggcaggctggagacttcaaaaatggtccgattgggctgaaatttt
gcacacttgatccttgggcaaatccctgggggcatttttttcattgtttc
aaaattttaatttttggggcctgaggacgagtttttcgccaaaacgaggc
taaaactttggggcaggctggagacttcgaaaatggtccgattgggctga
aattttgcacacttaatccttgggcaaatccctgggggcgttttttttat
tttttcaaaattttaatttttggggcctggggacgagtttttcgtcaaaa
cgaggctaaaactttggggcaggttggagacttcaaaattggtccgattg
ggttgaaattttgcacacttgatccttgggcaaatccctagtgggcattt
ttttcattttttcaagattttgatttttggagcctggggacgagttttta
gcctaaacgaggctaaaacccaaaatgctataatttttcttaagccatta
agtttacaattgggcctacgaatgatttcaaagatactgaagttgagcca
gtgcggttagcacgttcgacagtttcGGAACTAGTCTCGAAACTTACTTT
GTCTTAGTTACAGAGAGCATAGCCTAgatactagacgtcacggctttttt
tCTACGTAGTAATGTCTATTCCACATGAGAGCCTGATAACCTGATTCAGA
TCATGTTTACTTAGTCCACCGCGCCGTAACACCAGAAGAGATGCGAAAAA
ACACAAACGAACTGCCTTTTCCATTTTGTTACTCAATGCGTACATGCGTA
CTGGCCATGGTCTGGCCATGAGAAAATTGATCGTTTCTTTAGATTATGAA
ATGTGTTATTGAAATATTTAAcgtactgaatttttttaaagatacgcCTG
GTTGGCGAATTTTAAGACTTTTCTCAtgcccttaaagaaaacattatgaG
AATCAGGTTATTGTATGATTAAACGAGTAAAATactgttttatgtttttt
aggataatttgatttatattttggaaaaatatatatacC

Coding sequence (CDS) from alignment at sc0000228_pilon:381600..388238+

>MSTRG.19683.1.p1 ID=MSTRG.19683.1.p1|Name=MSTRG.19683.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1161bp|location=Sequence derived from alignment at sc0000228_pilon:381600..388238+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTCTATCCATCCATAGATTACCATACGCCACCATTTTCGGAGGTGTAGG
TGCATTCACAAAAGAGGACTTTCAACGTATCAATGGATTCTCCAATATGT
TTTGGGGATGGGGTGGAGAAGATGATGATCTATACACAAGaatcaCCAAA
GTTGGATTCAAATTGACCAGACCATCATTAAAGCGTGGTCGTTATACGAT
GATTAGAATCCATCATTTCCAGAGCTCAAAGGCCGATCCTAACAGGATGA
ACTTGTTGAGAAACTCAGCTCAAAGAATGTCAGCGGACGGACTAAACACA
TTGAAATATAAATTGGACAAAGTGGACCAACAACCTCTTGTGACATTCGT
CAAAATCGAATTGAAGAGAAGCATGTACTCAAAATAGCTTCTATCCATCC
ATAGATTACCATACGCCACCATTTTCGGAGGTGTAGGTGCATTCACAAAA
GAGGACTTTCAACGTATCAATGGATTCTCCAATATGTTTTGGGGATGGGG
TGGAGAAGATGATGATCTATACACAAGaatcaCCAAAGTTGGATTCAAAT
TGACCAGACCATCATTAAAGCGTGGTCGTTATACGATGATTAGAATCCAT
CATTTCCAGAGCTCAAAGGCCGATCCTAACAGGATGAACTTGTTGAGAAA
CTCAGCTCAAAGAATGTCAGCGGACGGACTAAACACATTGAAATATAAAT
TGGACAAAGTGGACCAACAACCTCTTGTGACATTCGTCAAAATCGAATTG
AAGAGAAGCATGTACTCAAAATAGCTTCTATCCATCCATAGATTACCATA
CGCCACCATTTTCGGAGGTGTAGGTGCATTCACAAAAGAGGACTTTCAAC
GTATCAATGGATTCTCCAATATGTTTTGGGGATGGGGTGGAGAAGATGAT
GATCTATACACAAGaatcaCCAAAGTTGGATTCAAATTGACCAGACCATC
ATTAAAGCGTGGTCGTTATACGATGATTAGAATCCATCATTTCCAGAGCT
CAAAGGCCGATCCTAACAGGATGAACTTGTTGAGAAACTCAGCTCAAAGA
ATGTCAGCGGACGGACTAAACACATTGAAATATAAATTGGACAAAGTGGA
CCAACAACCTCTTGTGACATTCGTCAAAATCGAATTGAAGAGAAGCATGT
ACTCAAAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19683MSTRG.19683Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19683.1.p1.exon1MSTRG.19683.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19683.1.p1.exon2MSTRG.19683.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19683.1.p1.exon3MSTRG.19683.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19683.1.p1MSTRG.19683.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000228_pilongenomesc0000228_pilon:381600..388238 +