MSTRG.19677.1.p1 (mRNA) -

Overview
NameMSTRG.19677.1.p1
Unique NameMSTRG.19677.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000228_pilon:308573..312467-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19677.1.p1 ID=MSTRG.19677.1.p1|Name=MSTRG.19677.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3895bp|location=Sequence derived from alignment at sc0000228_pilon:308573..312467- (Clytia hemisphaerica_ch_hm2_pilon)
GAAAAATACAACAGAATATAACAGTTCTTAAAAATTATTGTAATAACAGA
GCTATAAAGAGGACTTTTTTGTTGTCCCGGGCAAATATCGCAGTATATTT
ACTTGATGTACTTAACAACTTTTCACAAAATTTTTCTTCATTTTCTCTAA
AAATCATTTGAAGATGTGAAAAAAGAAGAAAAACAATTTGCCCTCTGAAG
TAAGATGAAGTCAAGATTATGGCCAGTGGATTTGGTTTTTCTTGTATTTT
TCATTCAAATATTTGGTGATGGATTATTGACTTATCAAGATGAAAATCTT
ATTGGAAACGACGTTATCAAACCAAGAATTTGCTCTGGGTTCAGTGACAA
TGAACATAAATCAAAATACATTTCCGAAATCGTAGCTAGTCTTGATCGCA
TCATAAATCACTTCTCTTTTTACACTGATCACCTGATCGCTGATGGTCTG
TTTGGTTTAAGAATCGCTGAAGGCGTGTTGAAAAATATCGTCCAATATGG
AGACCGTTACAAACATCACAAAATTGAAGCATTACACTCTCGTTTATCAA
TGATCAATCAACTTTCATATGAAGGAATCACAAAGAGAAAATTACCTTAT
GATGTTCAATTCGATAAAATCATGAGGGAACCTTTTGATCGATTGTGGCC
ATTCAAAAGCTTCAAAGATTTCAAGAAAGACATTGTGAAAGGTTTGGTAT
GAATTATGTTTTAAGTAAATGATCTAATTTCCTTTCATGCCCGGGGGGGT
TCAAAATGGGTTACGGGGATGCGCCGCTGGTCAGGGTACCTTTTTTAACC
TCCACGAGTCCCAGGTAGGGTCGCAAAAAACACCAAAATAGAAAGATCAG
TCCCTCGTAGGGTGCCTTTTTAGAAAATTTGGGGAAAAAGAAGGAAATTT
TAGAAAACTTTAAAATTTCAGTCCCATTCAGGATCACTTTTTCTACAAAT
TTCGCCAAATTTTTGAATAAACGAGTCCCACGTAGGGTCCATTTTTCGAA
CCTTAGCGGAGCACCCCCGTCGGTCGGTGAGGGTAGTACCCCCCCCCACC
CGGGTTTCACGCCGTCTAGCTCAAATTTTAGTTTACTATAATATTATGAA
CCTTTAGCCATTGATTACTTTGCAAATACTGAAAACACGCTGGGCTGACA
TCGAAGCTGAACCTCTTACTAAAAGAACGAGATTGTGCTCTATGGCTAGC
CAGTAGCAAGGTTAAAGTTTTTTTAAAAGCGTCTTTGATATTATTGTTTC
GGCATCAACTCAAAGAAAATTACTTTTCCTATCCGAAAATCTTTATGGCG
ATAGCTGATCAATATCTTGTAATCAACCCCATCTTATCCATCCCTGTTTT
AAAGCCACGGTGGAGATTTTCCACAATGGGAAATAATTTTTTTATCGGAA
TCCCAATAGGGATAAAGATTATATTCTTCCCAGCCTAAAAAATCCAGTAG
GAATGGTCTTGGAGTGCAAATTATTACCCTGAGTATCAGAGGCTAAGTTT
TCAAAGAAAATAGTAACCTCTGAAGACAAATAATAGAAATTTTATCGCCC
ATGTGTCAATCTAATCACTGTAGAAAAAATCAAAGATGAAGAGCAAATAT
TACCATATTAATGTCTAGCAGACTGTATCAGTATGCAGTTTACTATTTAC
GAATTCCCCAGAAACCTCCAAGTGTAGTTGAAATGAGTTTACTTCGAAAG
AAACCTTTTACATGATCCCCAAATGTATAACAGTAATTACTAAACTTTTA
ATTATGGAAATCTCACTTTAATTGAATCGAAATAATTGACAGACTTTATG
TTATGATTCTCTATCACTGACTCTTTTTACAAAGCATTGATGACTTTTTG
TAAGTTGTGTTTTCAACGACGGGAATAAAAATATCGACTATGATGCTCAT
CCAAGATCTTGGATGGTCGTCATGGTTACTTTTGTCTTAGCTGATTGCGC
GATGAATAGAATCTCGATTCGTCGGCACAGCGTAAATATATGATTTTGAG
CTGTGCTTTTCACCGTAGCAAATTATCCATTGAATTTCAATTGGGATGAA
ATCGAAGTCATTTTGCTAATGCAGAATTGAAGGTTATTTTTCCAACCGAG
GATGAAATTGTGGTCGAAAATATTCCATGGGCGAGGGTCCCACCGGGGCT
GTGGCAAAAGGGTGTGATTCAGTAAGGTTAGATTCGGTTCTTGATTTTAG
GAATTTAAAACCCCGACCCAATTTCTTCCAGATTACATACATGGTATAGA
CAAAGATTTTGATGAAGACTTCAGTGACCACTGTTTCGCGTTGTTGTTTG
GGACAGCACCTCAATCGAAAGGTCGGCAATGCGTGGTCACCAGAAAGTGT
ATTGAAGCAAACACCAGAGAAAAGACGGGCGATTATATGCTGACTCATCA
GTTCCTTTATTTCGTTTTTGGATTCCAATATAGTAAGTATATCTCTTTGT
CTGCTGAGTTCCAAATATCGATATAAGAAAAACGGATGAAAAGCAAGCAC
TCTTTTTTTTAAACGTTGAGATCCCCGCCCCCTCTAATGCAAAACAAATC
ATTTTAGATCTTTAATATGAATATACTACCCCGATGAAATTGAAAGAGAG
AAAAATTTTGATCACCCCTTCAAACTCTTGAAGCTTCTTTCTCTGACCAT
TCCTCAATAACGATAAGGCTACACAGAAAAAAACTGTTATTATTAACTAT
TGTTAACAATGAAATTTTAAATATCCGTTAGATTGTGACCAGCAAATAGC
CAAAGCAATGGGAGGAAAACACAAGATGGACGCGTTCTTCAGAAAGATGG
CAGTAAATATAGCATATCAGTTACAAATCAGTGGAAGTCCTAAAGATGCT
TTGCTCCTGGATAGAGAACTAGAACAAGCGATGTTCTGTGCAATGTTTGG
AATTGTGGAATGTACGTCACGTGATTTAACTCTTGATTTTATCAAGTATG
TTGAAGCTGACGGTTGTACCAAGTTATCGAAAGATCGAAAGACAAGAGAA
AAACGCCAAGATCAATTTCTAGGTAAGAATTGGTCCATCCTCATCCACCC
GTGTACTCCAGGCTTGATTTACGTTACTGATGGACGCCTGAGATTACCTT
GGGTGTAGCAAATTCCATCTCTATGGCGCTATCAGTAAAGCAATATGAAA
AAGTCGGGATAGACTTTGTCTGAGATATATTTTCATTTAAAGCACAAAAT
TTAGCATTGGATTGTTTTCAATTTGTTTTCAAATTTTGGCCAAATTTCTT
CCTCGTATCGTTATAAAATTGTTGGCTATTTTCTATATTCTTACCTATAA
AGAGGAACGAGAATATAGACAAAACAGGAACATTCAAGCTATCTACTTTC
AATTTCGTTTTAGGTGGATGTTCGCAACACACAGATGGATTAATGGCAGC
ATTCCTTTCTTTAAGTCTCAGATCTGCACTCATGCTACCCAATTGTAGTT
AATGGAGAACTTAACAGAACAATCTTTTAGGACATTTAGGATTCTATTCT
GCATATCACAGCATTTTTGGCAAAAGTTCAAATCTCAAAATTACTGTCTG
CAGAAACAGAGATTTCTTTTACTTTGCTAATTTCAAAACTTTGAGGTTTG
CCCTTGTTGTGTAGTGAGAAGGATGCTCAATCTCAAATGTTTTATGTTAT
CGCAAAGCAAAATAAATCTCAGTTTTCGCAGACTATTATATTGATATTTG
GCTTTCTGTATCAATAGCAGCGATGTATTATAGGATATTCATACCCGGAG
ACGACACTGGAAGATAAATACATAGAAAAAATTTGTGACTCTCTTGGTGG
TTTCAGCATAGAGGTAGAAAGAAAAACAGGAGTCGAACGTGTCGGTAATT
GGTCGTTAAAGTCTTTTGATTTCTTTTATAATATGTATCAAAAGA

Coding sequence (CDS) from alignment at sc0000228_pilon:308573..312467-

>MSTRG.19677.1.p1 ID=MSTRG.19677.1.p1|Name=MSTRG.19677.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4272bp|location=Sequence derived from alignment at sc0000228_pilon:308573..312467- (Clytia hemisphaerica_ch_hm2_pilon)
GTGGATGTTCGCAACACACAGATGGATTAATGGCAGCATTCCTTTCTTTA
AGTCTCAGATCTGCACTCATGCTACCCAATTGTAGTTAAATTGTGACCAG
CAAATAGCCAAAGCAATGGGAGGAAAACACAAGATGGACGCGTTCTTCAG
AAAGATGGCAGTAAATATAGCATATCAGTTACAAATCAGTGGAAGTCCTA
AAGATGCTTTGCTCCTGGATAGAGAACTAGAACAAGCGATGTTCTGTGCA
ATGTTTGGAATTGTGGAATGTACGTCACGTGATTTAACTCTTGATTTTAT
CAAGTATGTTGAAGCTGACGGTTGTACCAAGTTATCGAAAGATCGAAAGA
CAAGAGAAAAACGCCAAGATCAATTTCTAGATTACATACATGGTATAGAC
AAAGATTTTGATGAAGACTTCAGTGACCACTGTTTCGCGTTGTTGTTTGG
GACAGCACCTCAATCGAAAGGTCGGCAATGCGTGGTCACCAGAAAGTGTA
TTGAAGCAAACACCAGAGAAAAGACGGGCGATTATATGCTGACTCATCAG
TTCCTTTATTTCGTTTTTGGATTCCAATATAATGAAGTCAAGATTATGGC
CAGTGGATTTGGTTTTTCTTGTATTTTTCATTCAAATATTTGGTGATGGA
TTATTGACTTATCAAGATGAAAATCTTATTGGAAACGACGTTATCAAACC
AAGAATTTGCTCTGGGTTCAGTGACAATGAACATAAATCAAAATACATTT
CCGAAATCGTAGCTAGTCTTGATCGCATCATAAATCACTTCTCTTTTTAC
ACTGATCACCTGATCGCTGATGGTCTGTTTGGTTTAAGAATCGCTGAAGG
CGTGTTGAAAAATATCGTCCAATATGGAGACCGTTACAAACATCACAAAA
TTGAAGCATTACACTCTCGTTTATCAATGATCAATCAACTTTCATATGAA
GGAATCACAAAGAGAAAATTACCTTATGATGTTCAATTCGATAAAATCAT
GAGGGAACCTTTTGATCGATTGTGGCCATTCAAAAGCTTCAAAGATTTCA
AGAAAGACATTGTGAAAGGTGGATGTTCGCAACACACAGATGGATTAATG
GCAGCATTCCTTTCTTTAAGTCTCAGATCTGCACTCATGCTACCCAATTG
TAGTTAAATTGTGACCAGCAAATAGCCAAAGCAATGGGAGGAAAACACAA
GATGGACGCGTTCTTCAGAAAGATGGCAGTAAATATAGCATATCAGTTAC
AAATCAGTGGAAGTCCTAAAGATGCTTTGCTCCTGGATAGAGAACTAGAA
CAAGCGATGTTCTGTGCAATGTTTGGAATTGTGGAATGTACGTCACGTGA
TTTAACTCTTGATTTTATCAAGTATGTTGAAGCTGACGGTTGTACCAAGT
TATCGAAAGATCGAAAGACAAGAGAAAAACGCCAAGATCAATTTCTAGAT
TACATACATGGTATAGACAAAGATTTTGATGAAGACTTCAGTGACCACTG
TTTCGCGTTGTTGTTTGGGACAGCACCTCAATCGAAAGGTCGGCAATGCG
TGGTCACCAGAAAGTGTATTGAAGCAAACACCAGAGAAAAGACGGGCGAT
TATATGCTGACTCATCAGTTCCTTTATTTCGTTTTTGGATTCCAATATAA
TGAAGTCAAGATTATGGCCAGTGGATTTGGTTTTTCTTGTATTTTTCATT
CAAATATTTGGTGATGGATTATTGACTTATCAAGATGAAAATCTTATTGG
AAACGACGTTATCAAACCAAGAATTTGCTCTGGGTTCAGTGACAATGAAC
ATAAATCAAAATACATTTCCGAAATCGTAGCTAGTCTTGATCGCATCATA
AATCACTTCTCTTTTTACACTGATCACCTGATCGCTGATGGTCTGTTTGG
TTTAAGAATCGCTGAAGGCGTGTTGAAAAATATCGTCCAATATGGAGACC
GTTACAAACATCACAAAATTGAAGCATTACACTCTCGTTTATCAATGATC
AATCAACTTTCATATGAAGGAATCACAAAGAGAAAATTACCTTATGATGT
TCAATTCGATAAAATCATGAGGGAACCTTTTGATCGATTGTGGCCATTCA
AAAGCTTCAAAGATTTCAAGAAAGACATTGTGAAAGGTGGATGTTCGCAA
CACACAGATGGATTAATGGCAGCATTCCTTTCTTTAAGTCTCAGATCTGC
ACTCATGCTACCCAATTGTAGTTAAATTGTGACCAGCAAATAGCCAAAGC
AATGGGAGGAAAACACAAGATGGACGCGTTCTTCAGAAAGATGGCAGTAA
ATATAGCATATCAGTTACAAATCAGTGGAAGTCCTAAAGATGCTTTGCTC
CTGGATAGAGAACTAGAACAAGCGATGTTCTGTGCAATGTTTGGAATTGT
GGAATGTACGTCACGTGATTTAACTCTTGATTTTATCAAGTATGTTGAAG
CTGACGGTTGTACCAAGTTATCGAAAGATCGAAAGACAAGAGAAAAACGC
CAAGATCAATTTCTAGATTACATACATGGTATAGACAAAGATTTTGATGA
AGACTTCAGTGACCACTGTTTCGCGTTGTTGTTTGGGACAGCACCTCAAT
CGAAAGGTCGGCAATGCGTGGTCACCAGAAAGTGTATTGAAGCAAACACC
AGAGAAAAGACGGGCGATTATATGCTGACTCATCAGTTCCTTTATTTCGT
TTTTGGATTCCAATATAATGAAGTCAAGATTATGGCCAGTGGATTTGGTT
TTTCTTGTATTTTTCATTCAAATATTTGGTGATGGATTATTGACTTATCA
AGATGAAAATCTTATTGGAAACGACGTTATCAAACCAAGAATTTGCTCTG
GGTTCAGTGACAATGAACATAAATCAAAATACATTTCCGAAATCGTAGCT
AGTCTTGATCGCATCATAAATCACTTCTCTTTTTACACTGATCACCTGAT
CGCTGATGGTCTGTTTGGTTTAAGAATCGCTGAAGGCGTGTTGAAAAATA
TCGTCCAATATGGAGACCGTTACAAACATCACAAAATTGAAGCATTACAC
TCTCGTTTATCAATGATCAATCAACTTTCATATGAAGGAATCACAAAGAG
AAAATTACCTTATGATGTTCAATTCGATAAAATCATGAGGGAACCTTTTG
ATCGATTGTGGCCATTCAAAAGCTTCAAAGATTTCAAGAAAGACATTGTG
AAAGGTGGATGTTCGCAACACACAGATGGATTAATGGCAGCATTCCTTTC
TTTAAGTCTCAGATCTGCACTCATGCTACCCAATTGTAGTTAAATTGTGA
CCAGCAAATAGCCAAAGCAATGGGAGGAAAACACAAGATGGACGCGTTCT
TCAGAAAGATGGCAGTAAATATAGCATATCAGTTACAAATCAGTGGAAGT
CCTAAAGATGCTTTGCTCCTGGATAGAGAACTAGAACAAGCGATGTTCTG
TGCAATGTTTGGAATTGTGGAATGTACGTCACGTGATTTAACTCTTGATT
TTATCAAGTATGTTGAAGCTGACGGTTGTACCAAGTTATCGAAAGATCGA
AAGACAAGAGAAAAACGCCAAGATCAATTTCTAGATTACATACATGGTAT
AGACAAAGATTTTGATGAAGACTTCAGTGACCACTGTTTCGCGTTGTTGT
TTGGGACAGCACCTCAATCGAAAGGTCGGCAATGCGTGGTCACCAGAAAG
TGTATTGAAGCAAACACCAGAGAAAAGACGGGCGATTATATGCTGACTCA
TCAGTTCCTTTATTTCGTTTTTGGATTCCAATATAATGAAGTCAAGATTA
TGGCCAGTGGATTTGGTTTTTCTTGTATTTTTCATTCAAATATTTGGTGA
TGGATTATTGACTTATCAAGATGAAAATCTTATTGGAAACGACGTTATCA
AACCAAGAATTTGCTCTGGGTTCAGTGACAATGAACATAAATCAAAATAC
ATTTCCGAAATCGTAGCTAGTCTTGATCGCATCATAAATCACTTCTCTTT
TTACACTGATCACCTGATCGCTGATGGTCTGTTTGGTTTAAGAATCGCTG
AAGGCGTGTTGAAAAATATCGTCCAATATGGAGACCGTTACAAACATCAC
AAAATTGAAGCATTACACTCTCGTTTATCAATGATCAATCAACTTTCATA
TGAAGGAATCACAAAGAGAAAATTACCTTATGATGTTCAATTCGATAAAA
TCATGAGGGAACCTTTTGATCGATTGTGGCCATTCAAAAGCTTCAAAGAT
TTCAAGAAAGACATTGTGAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19677MSTRG.19677Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19677.1.p1MSTRG.19677.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19677.1.p1.exon4MSTRG.19677.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19677.1.p1.exon3MSTRG.19677.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19677.1.p1.exon2MSTRG.19677.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19677.1.p1.exon1MSTRG.19677.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000228_pilongenomesc0000228_pilon:308573..312467 -