MSTRG.19676.1.p1 (mRNA) -

Overview
NameMSTRG.19676.1.p1
Unique NameMSTRG.19676.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000228_pilon:302357..305196+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19676.1.p1 ID=MSTRG.19676.1.p1|Name=MSTRG.19676.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2840bp|location=Sequence derived from alignment at sc0000228_pilon:302357..305196+ (Clytia hemisphaerica_ch_hm2_pilon)
AAAAATGTTGCAAGGAAAAGCCATCTGAACAAACGAAGATACTTACCACC
AAATCATCGAAATATTAATTCCTTTTACGTTTATGAACATGTCAGTCAGt
ataaaagaaattgaattaCCAAACCAACTGGAGGTGAGTTACCTTTAcaa
ttttctgataattttgGGTGACAGGAGGGATGGGGCAGTGAGTTTACCAA
CTGACAGCGGTATATATGTCGAAAAATTCGGCTTTTAAAACCGTACGCTT
ATCaaaaaaaTCAGTGAaattcgtacccttacagtgtatttttctcaaat
tttcaactctttcaGAGCTAAATTAAATagttaaaatttttgagcaagAA
TCTACAATTTTTCCTTGACTTGATAATgttcacccttacagtgcatttaa
caaaattccacccttatagtgcatttCTGCTATCTTGAAAAACATATCCT
TAACCACCGTACATACctgtcggtcaatttgcctgactgcatCCCCGGGT
TTGACGATCAATGATGTACCAGAtgcaccacaaaaaagtttttttctttt
cgacgacaacaaaaataattgtctgtaaaaaaatattctgtAGAGCCCAA
AAACAGAAACTCTAACagctttataattttatttgatAATTTCCATAGTC
GAATGTCTCAATCTGGACGTGGTACGCAATGTTAtgctaaataaaaattt
attaagaatcagtagatttttttcaaattcaaaagtaAGAAAGGGTAAAA
AATTCACATTCTTACATGATGCAATTCTTGGGATATCGTTTAATCATAAT
TTCGCCGTAGGTTGCAAAATATctattttgcttttaattctttattcTAA
GACGTGAACATTATACACGATTATTCGAATTCCGATACCACGAAGCTGTG
GGAAATGTCTTTTCCTCTTCCCGTTTAACTTCCGCAAATATCTCATTAAG
TAAGATTTCTTTCTGTTTTCATTCAACAGGGTTGACAGTTGACAAAGGAA
GATGGAGGATCGTCAAACAGAATGGAAAGCCAAACGAAAACGAACCTATA
TCGCTTTCTGTGTCGTCACATTTGGCTTAGGACTAGAGTACTCATTAGTC
TTTCCTAGCCTGTGGTTTTACATTAATAACATTATCCAGGCTGACTACCC
TAAATTGTTTTATGGTAGCGCACTCTCTGCTTATCCACTTGCGAGCATCA
TTGGAGCTTTCACTATCGGCAGATACGTCGATCGAACTcgaaaagcaaaa
caaattcTCATTTTATTATTGATCTGTGAAATCTTTGGCAATCTGCTTTA
TTCCTTGTATTTTTCACCATGGTGTCCATTTTTCGGACGTTTACTTTCCG
GATTTGGTGATGTCTGCAATATGATTATAACAGGAGAAATTGCTCGATCC
TACCCCAAGAACGAGATCACCAAAAAGCTTTCACTGGTTGTCATGACATT
TTCATGCGGTTTCATCATCGCACCGGGAGCAAACATTCTCTTCGGAGATG
TCAGGTTTTCCGTATTTAATTTTTGGATAACATACGGAAACATTCCGGGA
TTGTTAATGGCTTTCGTTTTCACTATTGTTTTAAGTGTGGTCACTTTTCT
TGTCCATGATATTTCACGTGAGTTTGACCTCAAACAAAACCAAGAGAATA
GTCAAAGTTACGAAGATCGGgaaatgaaaaactttgatGAGATAAGTGAT
AGCGAAAAAAGCAGTTTGATTGTAGAAGACATAGAACCAAGTTCGATGGA
TAGTAAGGAAGAAATGAACCATTTACAAACATTGGGTCTCATACTAAAGC
AACCAGATTTATTACTCCTACTTTCATTCACTTTTGTTGCTTCCTATATT
CTTTTCGGATTTGACACATTATTATCACTTATCGGCTCACGGTACTTTGG
TTTCAGTGTCAAGGTAACAAGCCTCATTTTCATTATAGATGGAGGCATTT
ATTTTGTTGTACTCTGGTTGCTTGGATACGCTTCTAAAAGATGCACCGAC
TATCACGCTATTGTGATGTCATTCTCAATTCTATTTGCTGGATTAGCAGC
AATTTTCGTGCTCGCTTTACAAGAAGTCACAAATGTGGTTCTGAAGTATA
GCCTCCTGATTGTTTACTTACTAGCGTTCAGCTCAACATGGACTATCGAG
GAAGTATTATCACGGTCATTATTTTCGAAACTGGTTCCATCATGGTGTCA
AAATTACGCTGAAGGCGTCCGCCGCTCTGTCAGCTCGGCCGCTTTCATAA
TCTCAGGTGTGACGTCATCAGGTCTGTTTGACAACCTACAATATTTGAGT
TTGGCGTTGCTATTGGTTTCATTTACGTTGCTGGTACTTttcatttcaag
aaaaaaagttctCGTTAACCCAACGTCTTTGTTTTGAGGTATCTTGCAAG
GTAGACTAACAAACTAGTCTGCTAATTAattcatgtcagagggcgggaac
ataaaggcggcgggcgtttgcttgaataggagctgcgtaggagaacgaga
aAAAGTTGgcgagaggctgctgattaacagctttcagcccttgccgccga
cgaaacttcttcctacgcttacttAACTCCTACAcccacttttcccgcgt
gataccgttccagcccgactggcgtgtcAGTCTACTTGCAAGGCTTTAAC
TGAACCGGAATTTTATGCAATATCTAACGGGAAATttgtcataaaatttt
attcttGTCTATTTAGTTATTTACATACTTTCATGATATGTATAGCtagt
gaattttatttttggtagGTAGTGATTTTCATTTaggtttaaaaattata
ttttggtaAAGAAATAAATAAGCATTACTACGGATACGCC

Coding sequence (CDS) from alignment at sc0000228_pilon:302357..305196+

>MSTRG.19676.1.p1 ID=MSTRG.19676.1.p1|Name=MSTRG.19676.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1386bp|location=Sequence derived from alignment at sc0000228_pilon:302357..305196+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAGGATCGTCAAACAGAATGGAAAGCCAAACGAAAACGAACCTATAT
CGCTTTCTGTGTCGTCACATTTGGCTTAGGACTAGAGTACTCATTAGTCT
TTCCTAGCCTGTGGTTTTACATTAATAACATTATCCAGGCTGACTACCCT
AAATTGTTTTATGGTAGCGCACTCTCTGCTTATCCACTTGCGAGCATCAT
TGGAGCTTTCACTATCGGCAGATACGTCGATCGAACTcgaaaagcaaaac
aaattcTCATTTTATTATTGATCTGTGAAATCTTTGGCAATCTGCTTTAT
TCCTTGTATTTTTCACCATGGTGTCCATTTTTCGGACGTTTACTTTCCGG
ATTTGGTGATGTCTGCAATATGATTATAACAGGAGAAATTGCTCGATCCT
ACCCCAAGAACGAGATCACCAAAAAGCTTTCACTGGTTGTCATGACATTT
TCATGCGGTTTCATCATCGCACCGGGAGCAAACATTCTCTTCGGAGATGT
CAGGTTTTCCGTATTTAATTTTTGGATAACATACGGAAACATTCCGGGAT
TGTTAATGGCTTTCGTTTTCACTATTGTTTTAAGTGTGGTCACTTTTCTT
GTCCATGATATTTCACGTGAGTTTGACCTCAAACAAAACCAAGAGAATAG
TCAAAGTTACGAAGATCGGgaaatgaaaaactttgatGAGATAAGTGATA
GCGAAAAAAGCAGTTTGATTGTAGAAGACATAGAACCAAGTTCGATGGAT
AGTAAGGAAGAAATGAACCATTTACAAACATTGGGTCTCATACTAAAGCA
ACCAGATTTATTACTCCTACTTTCATTCACTTTTGTTGCTTCCTATATTC
TTTTCGGATTTGACACATTATTATCACTTATCGGCTCACGGTACTTTGGT
TTCAGTGTCAAGGTAACAAGCCTCATTTTCATTATAGATGGAGGCATTTA
TTTTGTTGTACTCTGGTTGCTTGGATACGCTTCTAAAAGATGCACCGACT
ATCACGCTATTGTGATGTCATTCTCAATTCTATTTGCTGGATTAGCAGCA
ATTTTCGTGCTCGCTTTACAAGAAGTCACAAATGTGGTTCTGAAGTATAG
CCTCCTGATTGTTTACTTACTAGCGTTCAGCTCAACATGGACTATCGAGG
AAGTATTATCACGGTCATTATTTTCGAAACTGGTTCCATCATGGTGTCAA
AATTACGCTGAAGGCGTCCGCCGCTCTGTCAGCTCGGCCGCTTTCATAAT
CTCAGGTGTGACGTCATCAGGTCTGTTTGACAACCTACAATATTTGAGTT
TGGCGTTGCTATTGGTTTCATTTACGTTGCTGGTACTTttcatttcaaga
aaaaaagttctCGTTAACCCAACGTCTTTGTTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19676MSTRG.19676Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19676.1.p1MSTRG.19676.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19676.1.p1.exon1MSTRG.19676.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19676.1.p1.exon2MSTRG.19676.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000228_pilongenomesc0000228_pilon:302357..305196 +