MSTRG.19661.1.p1 (mRNA) -

Overview
NameMSTRG.19661.1.p1
Unique NameMSTRG.19661.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000228_pilon:114584..117878+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19661.1.p1 ID=MSTRG.19661.1.p1|Name=MSTRG.19661.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3295bp|location=Sequence derived from alignment at sc0000228_pilon:114584..117878+ (Clytia hemisphaerica_ch_hm2_pilon)
GCagtatttgtttgtttttagccattaaaaaataacaataaaaaaaatag
ccagcagttcaaaaacatttcaagatGACTGTACTGTCATTTTTTGGTTG
CACATTCATTGCATTTGGACCATCAGTGGCAATGTTTGCTCTAACTGTGG
CTCCTGATGCACAACAGGTCATTGTTTTCATCAGCAGGTgagaaataata
aaattttgataataattaatttaaaatttAaaaatttttgttttagttaa
ttctaggtaatttCAAGAAATATTCAGAGGCTATTTAGAAGGATCAAGCA
CAGGGACACAATTCATACTTTGGTATTGTCTCTCTAGGCGCTGACAAGcc
ccattttcatttttccaTtttgagtttcatatatatatattttcctaATC
AAGATCTCTTGTTGAATAAGTAACTCTAGCATTAAAGCTACGCACATTAG
TAAAAAACTGTGTAAAAGTgtgtactttatattttcttgatgcaggagtt
ttttaatttattcaacATGAAATTATGATGACTTATGATTAGGAAAAGTC
GATTTTGTAACGTGTTCTTTTTTACTTAATAGTGCTTTCTGCTGGTTACT
CTCATTGCTGGCAACTTCATTACTATGGTTAGGTATACAGCATGTTGTAG
GGCGGTTGATTATCATGGTCCTAATATCAGTTTTATTTCAAGAATTATTC
AGATTTGTATTATGGAAAATTGTCAGGTTTGTCTGTTGTTATATTTTTTC
AGATACATTATCTGGTAGTCTGTCGTGTTACGTATCATTATAGATATTTT
TCAACAATAAGAGGAGGTCTATTTTGGGACAGGGAAGCAATCAATTTTCT
AAGGTCCCCCCAAATTGAAAGGTAGTATCAAAAACTAGTTAAAGGttaaa
aaatgtatttcattCTAAATTTGAACCAGTGAAGCTTTAGTTATTGAACC
TATTGCTCGAgattttgtttattgttttttagGCGGGCTGAAGCAGGCCT
TATTGAAATGACAAACAACCACTCTCCGTACAGGAAGCTATATTTTCATT
ATGGTCAGTATGAtaaacttttttctcaaaaaacctCATTGCAAATGTAT
GACCTTGTGTGTCGTAAGTCTTGTTGTCTATCCGAAATATTTATTGGCAG
GCTGAAGACTTCCAAATTCTGTTTTGTCAGCAATTTAGCATACCTTCTTA
ACTGTTTCCTAAAATTCTCTTCATCCCTTGTGGTGCGCAtgttcaaatat
tttattttcaggatACAGGAAGGTCTATTTCCCAGATTAATTAAATTACC
AAAACTTCTGTTTCTACTTTGTAGTTGCTGGACTTGGTTTTGGCTTTATG
AGCGGTTTATTTGCAATGGTCAATATTCTAGCAGATACATCAGGTCCTGG
AACTCTAGGTCTCAATGGTCATGATCCAAACTTTGCTGTCATATCAGGTG
AGTCACATTCTAACTAAAAGTTTATACTTCTTGAGATAAAACATTAAAAG
AACAAGCTTATTAAGAAACCAATTTGTAGAAAGTTTATTTGCGAAGGGAT
AAAGAGCTTCACAACCCAAGTTCTTATTTTAAATGGTGTATCGTGTACAC
ATGTACGCCAGTTTCTCAAGGTCTTACTAAAATTAGAAATTGCAGAACTT
AAGGTAACAAGTATTTTGTTTTAAAAGAGATTCCAGCTACATAAAATGTA
TTAGAGTTGGTAGGCTTTTACAccatattattttgAaaatattgcccttt
tAaaataaaaaattcgatTTGAATATAATCACTTCTTTTTAGCTCGAATT
TGTCTTATTTTCATTCACAAATCTTGCACTGTTTTGACTATGACTagtgg
gctcttccagaaaatgtccgtgcATGGGggaggggtagtgaaaaatctac
aaaatttgccttgtccggggggtcaactgatgcttgtccacggggggggg
ggtatacCTGctatcaaaagtcacaatgcccggggggtaaattttcaaat
atccaaatatcctccaccccccatattcaaattttttctggaagagtcca
TACGGCATTAATAGTCAAAATTATACAATTTTGCCTTTTTAGCCActctt
tgacatttttgaacaGAGAAAGTTGCAGGCTATTCTTTATTAATGATTTA
CAATTTCCTTGTcttcttttattattttcagcatttttaacGAACTGTAT
GATCTTGCTGAACACGTTTTGGGGAATTGTATTTTTTGAAGGATTAGATT
ATCGTAAATGGATACATATCATTGCAGTACCAGTTTCACATGTTTTAGTA
TCATGTTTGGTAAGTATAACGAGGCAACCTTTATTTGAGCTCTTTCTTTG
GCTGTATCTTTAAAGGATAACCTTTCCTCGAACAGACACCATAAGACCTC
TTGAAGTGTTATAATTATAATGGGAAAATTCGAAGGTTTCTAcgttaagt
tttatttttggaaattttcattgagattttaggctttgctacctgtattt
tttctcattttttctcagattatcatcgttaaatcatcttttatacatca
tatttttttcattttcacagacTCTTCTCAATGAACAGCAAATATATTGG
CCAGCATTAACTGTAGGTTACACACTAACTGTTATTTTTGGATTATGGAG
TTATTTATGTGTCGGTGGAAGTATAGAAAATCTGAAACGTGTTTTTACTG
CAAGACATACATCGACATCATTGCTCGATAATAATTGAAAAAACTAAAAG
TGTGGGTGTTTGAGTTTTTGATTTGCCAGAGTCTTTGACAATGGAGGTGG
GATATGCTGGATTATGTTGAATTCTGGATATCTTTTGATTTATAAGATGA
TTTTTAATAGCAATTCTCAATAATAAATACCCAGAAGAAAAGTTTAATTG
ATAATGATATCAACTGAAACCTGGTACTTACTTCGGATGAAGTTGTTACT
TGGGGTAAACATAGTTTTCAATGTTGGCAATAAACAGTGATGATAATGAT
ATGTGATAGTCTGGaaaaaaaTCATCTGTGATAATattattttgttgata
ttttgtaaaaattaacgAGCATTTTTTGTATCATAATGTTTTAATTTCAC
ACACAatacaaaatttgatttataTTCAGGGTTGGAATTTTTTCAGTGTT
GTTTTGGGTGCTTTAAGACATTCTTACAGTCAAGTTCTACGGCGTGATAG
CTCTTTACGAGGAAAATAAGTAAtgcgtatttaatttttcatttcttaac
GGTTTTACGCCTATTATTATTAATGCGGATGACTTGAAAAAGAAT

Coding sequence (CDS) from alignment at sc0000228_pilon:114584..117878+

>MSTRG.19661.1.p1 ID=MSTRG.19661.1.p1|Name=MSTRG.19661.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4482bp|location=Sequence derived from alignment at sc0000228_pilon:114584..117878+ (Clytia hemisphaerica_ch_hm2_pilon)
atGACTGTACTGTCATTTTTTGGTTGCACATTCATTGCATTTGGACCATC
AGTGGCAATGTTTGCTCTAACTGTGGCTCCTGATGCACAACAGGTCATTG
TTTTCATCAGCAGTGCTTTCTGCTGGTTACTCTCATTGCTGGCAACTTCA
TTACTATGGTTAGGTATACAGCATGTTGTAGGGCGGTTGATTATCATGGT
CCTAATATCAGTTTTATTTCAAGAATTATTCAGATTTGTATTATGGAAAA
TTGTCAGGCGGGCTGAAGCAGGCCTTATTGAAATGACAAACAACCACTCT
CCGTACAGGAAGCTATATTTTCATTATGTTGCTGGACTTGGTTTTGGCTT
TATGAGCGGTTTATTTGCAATGGTCAATATTCTAGCAGATACATCAGGTC
CTGGAACTCTAGGTCTCAATGGTCATGATCCAAACTTTGCTGTCATATCA
GcatttttaacGAACTGTATGATCTTGCTGAACACGTTTTGGGGAATTGT
ATTTTTTGAAGGATTAGATTATCGTAAATGGATACATATCATTGCAGTAC
CAGTTTCACATGTTTTAGTATCATGTTTGacTCTTCTCAATGAACAGCAA
ATATATTGGCCAGCATTAACTGTAGGTTACACACTAACTGTTATTTTTGG
ATTATGGAGTTATTTATGTGTCGGTGGAAGTATAGAAAATCTGAAACGTG
TTTTTACTGCAAGACATACATCGACATCATTGCTCGATAATAATTGAatG
ACTGTACTGTCATTTTTTGGTTGCACATTCATTGCATTTGGACCATCAGT
GGCAATGTTTGCTCTAACTGTGGCTCCTGATGCACAACAGGTCATTGTTT
TCATCAGCAGTGCTTTCTGCTGGTTACTCTCATTGCTGGCAACTTCATTA
CTATGGTTAGGTATACAGCATGTTGTAGGGCGGTTGATTATCATGGTCCT
AATATCAGTTTTATTTCAAGAATTATTCAGATTTGTATTATGGAAAATTG
TCAGGCGGGCTGAAGCAGGCCTTATTGAAATGACAAACAACCACTCTCCG
TACAGGAAGCTATATTTTCATTATGTTGCTGGACTTGGTTTTGGCTTTAT
GAGCGGTTTATTTGCAATGGTCAATATTCTAGCAGATACATCAGGTCCTG
GAACTCTAGGTCTCAATGGTCATGATCCAAACTTTGCTGTCATATCAGca
tttttaacGAACTGTATGATCTTGCTGAACACGTTTTGGGGAATTGTATT
TTTTGAAGGATTAGATTATCGTAAATGGATACATATCATTGCAGTACCAG
TTTCACATGTTTTAGTATCATGTTTGacTCTTCTCAATGAACAGCAAATA
TATTGGCCAGCATTAACTGTAGGTTACACACTAACTGTTATTTTTGGATT
ATGGAGTTATTTATGTGTCGGTGGAAGTATAGAAAATCTGAAACGTGTTT
TTACTGCAAGACATACATCGACATCATTGCTCGATAATAATTGAatGACT
GTACTGTCATTTTTTGGTTGCACATTCATTGCATTTGGACCATCAGTGGC
AATGTTTGCTCTAACTGTGGCTCCTGATGCACAACAGGTCATTGTTTTCA
TCAGCAGTGCTTTCTGCTGGTTACTCTCATTGCTGGCAACTTCATTACTA
TGGTTAGGTATACAGCATGTTGTAGGGCGGTTGATTATCATGGTCCTAAT
ATCAGTTTTATTTCAAGAATTATTCAGATTTGTATTATGGAAAATTGTCA
GGCGGGCTGAAGCAGGCCTTATTGAAATGACAAACAACCACTCTCCGTAC
AGGAAGCTATATTTTCATTATGTTGCTGGACTTGGTTTTGGCTTTATGAG
CGGTTTATTTGCAATGGTCAATATTCTAGCAGATACATCAGGTCCTGGAA
CTCTAGGTCTCAATGGTCATGATCCAAACTTTGCTGTCATATCAGcattt
ttaacGAACTGTATGATCTTGCTGAACACGTTTTGGGGAATTGTATTTTT
TGAAGGATTAGATTATCGTAAATGGATACATATCATTGCAGTACCAGTTT
CACATGTTTTAGTATCATGTTTGacTCTTCTCAATGAACAGCAAATATAT
TGGCCAGCATTAACTGTAGGTTACACACTAACTGTTATTTTTGGATTATG
GAGTTATTTATGTGTCGGTGGAAGTATAGAAAATCTGAAACGTGTTTTTA
CTGCAAGACATACATCGACATCATTGCTCGATAATAATTGAatGACTGTA
CTGTCATTTTTTGGTTGCACATTCATTGCATTTGGACCATCAGTGGCAAT
GTTTGCTCTAACTGTGGCTCCTGATGCACAACAGGTCATTGTTTTCATCA
GCAGTGCTTTCTGCTGGTTACTCTCATTGCTGGCAACTTCATTACTATGG
TTAGGTATACAGCATGTTGTAGGGCGGTTGATTATCATGGTCCTAATATC
AGTTTTATTTCAAGAATTATTCAGATTTGTATTATGGAAAATTGTCAGGC
GGGCTGAAGCAGGCCTTATTGAAATGACAAACAACCACTCTCCGTACAGG
AAGCTATATTTTCATTATGTTGCTGGACTTGGTTTTGGCTTTATGAGCGG
TTTATTTGCAATGGTCAATATTCTAGCAGATACATCAGGTCCTGGAACTC
TAGGTCTCAATGGTCATGATCCAAACTTTGCTGTCATATCAGcattttta
acGAACTGTATGATCTTGCTGAACACGTTTTGGGGAATTGTATTTTTTGA
AGGATTAGATTATCGTAAATGGATACATATCATTGCAGTACCAGTTTCAC
ATGTTTTAGTATCATGTTTGacTCTTCTCAATGAACAGCAAATATATTGG
CCAGCATTAACTGTAGGTTACACACTAACTGTTATTTTTGGATTATGGAG
TTATTTATGTGTCGGTGGAAGTATAGAAAATCTGAAACGTGTTTTTACTG
CAAGACATACATCGACATCATTGCTCGATAATAATTGAatGACTGTACTG
TCATTTTTTGGTTGCACATTCATTGCATTTGGACCATCAGTGGCAATGTT
TGCTCTAACTGTGGCTCCTGATGCACAACAGGTCATTGTTTTCATCAGCA
GTGCTTTCTGCTGGTTACTCTCATTGCTGGCAACTTCATTACTATGGTTA
GGTATACAGCATGTTGTAGGGCGGTTGATTATCATGGTCCTAATATCAGT
TTTATTTCAAGAATTATTCAGATTTGTATTATGGAAAATTGTCAGGCGGG
CTGAAGCAGGCCTTATTGAAATGACAAACAACCACTCTCCGTACAGGAAG
CTATATTTTCATTATGTTGCTGGACTTGGTTTTGGCTTTATGAGCGGTTT
ATTTGCAATGGTCAATATTCTAGCAGATACATCAGGTCCTGGAACTCTAG
GTCTCAATGGTCATGATCCAAACTTTGCTGTCATATCAGcatttttaacG
AACTGTATGATCTTGCTGAACACGTTTTGGGGAATTGTATTTTTTGAAGG
ATTAGATTATCGTAAATGGATACATATCATTGCAGTACCAGTTTCACATG
TTTTAGTATCATGTTTGacTCTTCTCAATGAACAGCAAATATATTGGCCA
GCATTAACTGTAGGTTACACACTAACTGTTATTTTTGGATTATGGAGTTA
TTTATGTGTCGGTGGAAGTATAGAAAATCTGAAACGTGTTTTTACTGCAA
GACATACATCGACATCATTGCTCGATAATAATTGAatGACTGTACTGTCA
TTTTTTGGTTGCACATTCATTGCATTTGGACCATCAGTGGCAATGTTTGC
TCTAACTGTGGCTCCTGATGCACAACAGGTCATTGTTTTCATCAGCAGTG
CTTTCTGCTGGTTACTCTCATTGCTGGCAACTTCATTACTATGGTTAGGT
ATACAGCATGTTGTAGGGCGGTTGATTATCATGGTCCTAATATCAGTTTT
ATTTCAAGAATTATTCAGATTTGTATTATGGAAAATTGTCAGGCGGGCTG
AAGCAGGCCTTATTGAAATGACAAACAACCACTCTCCGTACAGGAAGCTA
TATTTTCATTATGTTGCTGGACTTGGTTTTGGCTTTATGAGCGGTTTATT
TGCAATGGTCAATATTCTAGCAGATACATCAGGTCCTGGAACTCTAGGTC
TCAATGGTCATGATCCAAACTTTGCTGTCATATCAGcatttttaacGAAC
TGTATGATCTTGCTGAACACGTTTTGGGGAATTGTATTTTTTGAAGGATT
AGATTATCGTAAATGGATACATATCATTGCAGTACCAGTTTCACATGTTT
TAGTATCATGTTTGacTCTTCTCAATGAACAGCAAATATATTGGCCAGCA
TTAACTGTAGGTTACACACTAACTGTTATTTTTGGATTATGGAGTTATTT
ATGTGTCGGTGGAAGTATAGAAAATCTGAAACGTGTTTTTACTGCAAGAC
ATACATCGACATCATTGCTCGATAATAATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19661MSTRG.19661Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19661.1.p1MSTRG.19661.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19661.1.p1.exon1MSTRG.19661.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19661.1.p1.exon2MSTRG.19661.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19661.1.p1.exon3MSTRG.19661.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19661.1.p1.exon4MSTRG.19661.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19661.1.p1.exon5MSTRG.19661.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19661.1.p1.exon6MSTRG.19661.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000228_pilongenomesc0000228_pilon:114584..117878 +