MSTRG.19413.1.p1 (mRNA) -

Overview
NameMSTRG.19413.1.p1
Unique NameMSTRG.19413.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000221_pilon:562422..566251+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19413.1.p1 ID=MSTRG.19413.1.p1|Name=MSTRG.19413.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3830bp|location=Sequence derived from alignment at sc0000221_pilon:562422..566251+ (Clytia hemisphaerica_ch_hm2_pilon)
TTCATACCTTTTATTTTAACTCCATATTTGGTATTGATTGTTCTCTGAGG
GAGATGTTTTTCCTTTGGCTACGTATCTGAATAACGGTGGAACACGAATT
TCTATCATCGAATTGTAGTTTGTTACTATAAAGATTAGAAAATCGATAGA
AATATTTGACGTTGTTGAATTTTTCGTGTTAAATAGATGATTAGTCTGAA
CAGTTGACTTGGTCTTTTTCTGTTCGGAATATCGTATAAGCAACTGGTAT
CGACTGActcaaagtaaaaagtttatTAAGACCTGATAAATATAAAATTA
GATCTTAGTATACATTATTTTGCAGAACAAGATGTATCGAAGAAGCACTG
TATTGTTCTTACCATTGGTATTCTGCACCATGATTGGTGGAATCTTTGGT
GGTGGGTTGAGGCCTGGGTCCGATGAACATCACAAAGCATTCCTTGGTAA
ACTGAAAGATGAATATGATCATTTATCCGTTGAAGAGTCCGTTCGTAGAT
TGAGGTAAACTCGCTTATTTCTCGAATAGTATGTAACGTAATTGAGAACT
CTTGGAGTTTTTAAGAAACAAGCGGTGTCTCATTTATCCAGTGAGAGGTT
TTTAACACCTTCTCATAGACTCACTGGGAACCCTTTTCCCACTGGaagaa
ttggccaaaatattttcctCAGTGGAAAATCATACTatgatttttatccc
cactgaaaataatcagataagcaaatccccactgcaaaatattgtgctat
cttttccatccccactgaatcttctggctagaaaacaatggaattcaaac
caccagccataaaaaacataggaatatcaatccccatcgagttttggtcc
gttatttttacgcccactggctgataaattcccaccgggtctgtgagaag
gggctgtTTTTTAGCTTGTGTGTAGTGAGGAAAACCTGAATGAGCTAAAT
CGAAAGAGGGTTTGGCTATCGCCTGtttttttGAAAGGATACTGATTTCG
AATTCTACTGCTTTGATCTTGACAAATTGATTGGAAATTAGGTTTACCTT
CGCCTGTATATCCTTTCTTACATAGAACGAGTATTTAGTAATTGTTTTTC
CAGATAGTGGATACCACTGGGTCTGTTATATAGATTCgtgacaatagacc
ttttcataaattacttaatgaacatcacttgcctcgttttgaaatgatTG
TAATGGTGGATTACTCCCAGCGAATTTTATCataactactttctattcat
aaaaaaatcatttgccTCATATAAATCTATCatatgtctcaagggacata
atcaccatggcaattgtttgaatacgaggcaagtgatgttcgtgacgtaa
ttgaTGAAAATAACTATCTTTACTGAGAGTGTCTGGTATTCGATCGAAAT
TTAGTGTATGCATAGAACCAGTGACAAGCTAATCCAACGGATAAATTTGG
TACATATTCTCAACCTAAATCTACATATACTCTCAATTTCAGGTTACTCG
CTCCACACATTGATATGAATAAAGATGGTTTCATATCTTCCAAAGAATTA
CAAATCTGGGTTCGTGATAAATACACTTCTATCTTGGACTCAGAGGACAT
CGACTTCAAATTTCGTGAATTGGACATTCATTTTGATAACAGTTTAACAT
GGGATGAATACACTGAAAGATATTATGGTTTGAACAATACAGGTGAACTA
TACTTGTAAATTACGCACAACAATCAGTAAATCTGGCTTACGCaggctgt
ttttattttttcattatttcaaacTTAATGTTCCTTATATTCTTACAGTC
AGTTATTTCTGGAATCTTATGCCGAATTTGTTCTCATTTTGAGCCACATG
TCCTTATAAAGAAGCGTAGAACCTTTCTACTAATATTGTCTTCTCACTCG
AATATTTTGACAGTCACAATCAAGTTATCGGCGAATCTCTATCAATAAGT
CGACAAAATTAGACTCTAGTGATAAAATGCAAGATATTTAGTAAATGTAA
TCATTTATAGCGAGTGACGGACTTTCAAAGGAAATAAAGgagaattttaa
agaatatttggCGCGTGATCAACGACGCTGGAAATATGCAGATATAGATG
AGGATGGGGCGCTAAATCTAGAAGAATTCCACATGTTTTCGAAGCCAACA
AAATATGCAGAAATGGTGGATGTGGTTGCATACGTAAGCGTGTATTGCAT
AATAAAGGCCTCCGAAGCAGAATTCTCGAATTTATACGGGACAAAATTTA
CTGTTCCTTCTTATCATTGTTTAGGTCGAGTGAGAAGAATATATGTTGAG
CGTCTTTTGATGTCTAATGAGTGATATAGCCTAAGCTCTGTTGAAGTCGT
TTCTATAACACGAcccccccGCAAGTTTCCACAAGTTATATTTTAAAGAA
AGTCCGACTGTGGTAACCTGAAGTATTAGATGCCATTGTTATAAACAACT
CCAAATTACATCCTAAAACATATCCTAAGTTCGGTATAGGGTGTGTCCAA
TAGTTTGCACCTTCAGATAATTTGATATGACTATTGAGTATTAATCATCT
TTATCTGTTGTTCAGGAGGAAATTGAACATTATGATATCAACAAAGACGG
TTTCCTTTCCTTGGAAGAATACCTCAGTGAGTACAAAATAAATAATTCTT
ACCGCAGGGAGCGTATTATTTTATTGTTATTGCCCATTTATCGCATTTTG
ATACAACTCGGATCAGCAAGTAAAGCAAAATGAGATAGAAACATGATTTA
GTATGCGGCAACTGAAGCGGCGACTGAGCTATAAAGATATTCGATAATCA
CCTTTTTTCTTCGTTTCAGAAGCAATAGCTATGCCAGCCATGCGACCATT
GGACGAAAAGAAATTCCATGAAGAATATGACTTAGATAAAGATGGAAGGC
TGAACAAGGTAGAGTCGTAAATGGGCTTAGAATTCACAAATTATTGATAT
GTCTATCACCATAGAAAATTTGGCAGttttttttGCAGCCctggtcaaaa
atatttctaaaatccTTTCTACAATTGAACTAACTACGTGTGTGTGGCTG
TGAGGTATGGTATGTAAGATGCCATGGATAGTGTGGTCTCTACTATCGAT
CATTATTTTTATCACATCTCTTTCACCAGGATGAAGTAAAATTATGGAAG
ACACCAAAATTTTTCGATCAAGCAGAATTAGAAGCCAAAGAATTGATTCG
TATTGCAGATGATGATCAAGTATTTATTTTACTTCCATTTCTGGCTGGAG
TTCTTTTGGATTTCTTGACCAATCTTGATCTCTAACATTTATGTTTCTGC
TAAGCCATGAGACACAAATTATTCGACAAAAATggtcattttcaaaatca
aagttGGCGTTAAGGGAGGGCTTCAATTTCCAAAATACATAGTCCATGTA
ggatatatttgaaaaattcagcATTGACAAAATTTCAAGCTTGTCACAAG
GAAACTGGTTGTGATTATTTTAGCGCATTTAGCGCATTTGTTGATAACAC
TTTCCGTCATAAATTTCAAACCCCCCAGATTCAACACTGAAATGTATCCG
TCTTACCTTTGAATCTCTCTTTTTGAAGGATGGTAAATTGACAGTGAAGG
AGATAGTTCATAACCATTTCGTCTTTGTGGGAAGTAAAGCCACCATTTCT
GGAACAATGCTACATGATGAATTCTGAATCTTTGAACCAGTAGAAATGAT
GGTGCCAGGAGCTTCCTTCTTCAAATGAATATAATTCTTGAACATTTCAT
TATAATATTGAgcaaaattgtatatttttacgatgcatttgttatttttt
ctaaaaaacatagaaaacaaAGTAAACAAT

Coding sequence (CDS) from alignment at sc0000221_pilon:562422..566251+

>MSTRG.19413.1.p1 ID=MSTRG.19413.1.p1|Name=MSTRG.19413.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6195bp|location=Sequence derived from alignment at sc0000221_pilon:562422..566251+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATCGAAGAAGCACTGTATTGTTCTTACCATTGGTATTCTGCACCAT
GATTGGTGGAATCTTTGGTGGTGGGTTGAGGCCTGGGTCCGATGAACATC
ACAAAGCATTCCTTGGTAAACTGAAAGATGAATATGATCATTTATCCGTT
GAAGAGTCCGTTCGTAGATTGAGGTTACTCGCTCCACACATTGATATGAA
TAAAGATGGTTTCATATCTTCCAAAGAATTACAAATCTGGGTTCGTGATA
AATACACTTCTATCTTGGACTCAGAGGACATCGACTTCAAATTTCGTGAA
TTGGACATTCATTTTGATAACAGTTTAACATGGGATGAATACACTGAAAG
ATATTATGGTTTGAACAATACAGCGAGTGACGGACTTTCAAAGGAAATAA
AGgagaattttaaagaatatttggCGCGTGATCAACGACGCTGGAAATAT
GCAGATATAGATGAGGATGGGGCGCTAAATCTAGAAGAATTCCACATGTT
TTCGAAGCCAACAAAATATGCAGAAATGGTGGATGTGGTTGCATACGAGG
AAATTGAACATTATGATATCAACAAAGACGGTTTCCTTTCCTTGGAAGAA
TACCTCAAAGCAATAGCTATGCCAGCCATGCGACCATTGGACGAAAAGAA
ATTCCATGAAGAATATGACTTAGATAAAGATGGAAGGCTGAACAAGGATG
AAGTAAAATTATGGAAGACACCAAAATTTTTCGATCAAGCAGAATTAGAA
GCCAAAGAATTGATTCGTATTGCAGATGATGATCAAGATGGTAAATTGAC
AGTGAAGGAGATAGTTCATAACCATTTCGTCTTTGTGGGAAGTAAAGCCA
CCATTTCTGGAACAATGCTACATGATGAATTCTGAATGTATCGAAGAAGC
ACTGTATTGTTCTTACCATTGGTATTCTGCACCATGATTGGTGGAATCTT
TGGTGGTGGGTTGAGGCCTGGGTCCGATGAACATCACAAAGCATTCCTTG
GTAAACTGAAAGATGAATATGATCATTTATCCGTTGAAGAGTCCGTTCGT
AGATTGAGGTTACTCGCTCCACACATTGATATGAATAAAGATGGTTTCAT
ATCTTCCAAAGAATTACAAATCTGGGTTCGTGATAAATACACTTCTATCT
TGGACTCAGAGGACATCGACTTCAAATTTCGTGAATTGGACATTCATTTT
GATAACAGTTTAACATGGGATGAATACACTGAAAGATATTATGGTTTGAA
CAATACAGCGAGTGACGGACTTTCAAAGGAAATAAAGgagaattttaaag
aatatttggCGCGTGATCAACGACGCTGGAAATATGCAGATATAGATGAG
GATGGGGCGCTAAATCTAGAAGAATTCCACATGTTTTCGAAGCCAACAAA
ATATGCAGAAATGGTGGATGTGGTTGCATACGAGGAAATTGAACATTATG
ATATCAACAAAGACGGTTTCCTTTCCTTGGAAGAATACCTCAAAGCAATA
GCTATGCCAGCCATGCGACCATTGGACGAAAAGAAATTCCATGAAGAATA
TGACTTAGATAAAGATGGAAGGCTGAACAAGGATGAAGTAAAATTATGGA
AGACACCAAAATTTTTCGATCAAGCAGAATTAGAAGCCAAAGAATTGATT
CGTATTGCAGATGATGATCAAGATGGTAAATTGACAGTGAAGGAGATAGT
TCATAACCATTTCGTCTTTGTGGGAAGTAAAGCCACCATTTCTGGAACAA
TGCTACATGATGAATTCTGAATGTATCGAAGAAGCACTGTATTGTTCTTA
CCATTGGTATTCTGCACCATGATTGGTGGAATCTTTGGTGGTGGGTTGAG
GCCTGGGTCCGATGAACATCACAAAGCATTCCTTGGTAAACTGAAAGATG
AATATGATCATTTATCCGTTGAAGAGTCCGTTCGTAGATTGAGGTTACTC
GCTCCACACATTGATATGAATAAAGATGGTTTCATATCTTCCAAAGAATT
ACAAATCTGGGTTCGTGATAAATACACTTCTATCTTGGACTCAGAGGACA
TCGACTTCAAATTTCGTGAATTGGACATTCATTTTGATAACAGTTTAACA
TGGGATGAATACACTGAAAGATATTATGGTTTGAACAATACAGCGAGTGA
CGGACTTTCAAAGGAAATAAAGgagaattttaaagaatatttggCGCGTG
ATCAACGACGCTGGAAATATGCAGATATAGATGAGGATGGGGCGCTAAAT
CTAGAAGAATTCCACATGTTTTCGAAGCCAACAAAATATGCAGAAATGGT
GGATGTGGTTGCATACGAGGAAATTGAACATTATGATATCAACAAAGACG
GTTTCCTTTCCTTGGAAGAATACCTCAAAGCAATAGCTATGCCAGCCATG
CGACCATTGGACGAAAAGAAATTCCATGAAGAATATGACTTAGATAAAGA
TGGAAGGCTGAACAAGGATGAAGTAAAATTATGGAAGACACCAAAATTTT
TCGATCAAGCAGAATTAGAAGCCAAAGAATTGATTCGTATTGCAGATGAT
GATCAAGATGGTAAATTGACAGTGAAGGAGATAGTTCATAACCATTTCGT
CTTTGTGGGAAGTAAAGCCACCATTTCTGGAACAATGCTACATGATGAAT
TCTGAATGTATCGAAGAAGCACTGTATTGTTCTTACCATTGGTATTCTGC
ACCATGATTGGTGGAATCTTTGGTGGTGGGTTGAGGCCTGGGTCCGATGA
ACATCACAAAGCATTCCTTGGTAAACTGAAAGATGAATATGATCATTTAT
CCGTTGAAGAGTCCGTTCGTAGATTGAGGTTACTCGCTCCACACATTGAT
ATGAATAAAGATGGTTTCATATCTTCCAAAGAATTACAAATCTGGGTTCG
TGATAAATACACTTCTATCTTGGACTCAGAGGACATCGACTTCAAATTTC
GTGAATTGGACATTCATTTTGATAACAGTTTAACATGGGATGAATACACT
GAAAGATATTATGGTTTGAACAATACAGCGAGTGACGGACTTTCAAAGGA
AATAAAGgagaattttaaagaatatttggCGCGTGATCAACGACGCTGGA
AATATGCAGATATAGATGAGGATGGGGCGCTAAATCTAGAAGAATTCCAC
ATGTTTTCGAAGCCAACAAAATATGCAGAAATGGTGGATGTGGTTGCATA
CGAGGAAATTGAACATTATGATATCAACAAAGACGGTTTCCTTTCCTTGG
AAGAATACCTCAAAGCAATAGCTATGCCAGCCATGCGACCATTGGACGAA
AAGAAATTCCATGAAGAATATGACTTAGATAAAGATGGAAGGCTGAACAA
GGATGAAGTAAAATTATGGAAGACACCAAAATTTTTCGATCAAGCAGAAT
TAGAAGCCAAAGAATTGATTCGTATTGCAGATGATGATCAAGATGGTAAA
TTGACAGTGAAGGAGATAGTTCATAACCATTTCGTCTTTGTGGGAAGTAA
AGCCACCATTTCTGGAACAATGCTACATGATGAATTCTGAATGTATCGAA
GAAGCACTGTATTGTTCTTACCATTGGTATTCTGCACCATGATTGGTGGA
ATCTTTGGTGGTGGGTTGAGGCCTGGGTCCGATGAACATCACAAAGCATT
CCTTGGTAAACTGAAAGATGAATATGATCATTTATCCGTTGAAGAGTCCG
TTCGTAGATTGAGGTTACTCGCTCCACACATTGATATGAATAAAGATGGT
TTCATATCTTCCAAAGAATTACAAATCTGGGTTCGTGATAAATACACTTC
TATCTTGGACTCAGAGGACATCGACTTCAAATTTCGTGAATTGGACATTC
ATTTTGATAACAGTTTAACATGGGATGAATACACTGAAAGATATTATGGT
TTGAACAATACAGCGAGTGACGGACTTTCAAAGGAAATAAAGgagaattt
taaagaatatttggCGCGTGATCAACGACGCTGGAAATATGCAGATATAG
ATGAGGATGGGGCGCTAAATCTAGAAGAATTCCACATGTTTTCGAAGCCA
ACAAAATATGCAGAAATGGTGGATGTGGTTGCATACGAGGAAATTGAACA
TTATGATATCAACAAAGACGGTTTCCTTTCCTTGGAAGAATACCTCAAAG
CAATAGCTATGCCAGCCATGCGACCATTGGACGAAAAGAAATTCCATGAA
GAATATGACTTAGATAAAGATGGAAGGCTGAACAAGGATGAAGTAAAATT
ATGGAAGACACCAAAATTTTTCGATCAAGCAGAATTAGAAGCCAAAGAAT
TGATTCGTATTGCAGATGATGATCAAGATGGTAAATTGACAGTGAAGGAG
ATAGTTCATAACCATTTCGTCTTTGTGGGAAGTAAAGCCACCATTTCTGG
AACAATGCTACATGATGAATTCTGAATGTATCGAAGAAGCACTGTATTGT
TCTTACCATTGGTATTCTGCACCATGATTGGTGGAATCTTTGGTGGTGGG
TTGAGGCCTGGGTCCGATGAACATCACAAAGCATTCCTTGGTAAACTGAA
AGATGAATATGATCATTTATCCGTTGAAGAGTCCGTTCGTAGATTGAGGT
TACTCGCTCCACACATTGATATGAATAAAGATGGTTTCATATCTTCCAAA
GAATTACAAATCTGGGTTCGTGATAAATACACTTCTATCTTGGACTCAGA
GGACATCGACTTCAAATTTCGTGAATTGGACATTCATTTTGATAACAGTT
TAACATGGGATGAATACACTGAAAGATATTATGGTTTGAACAATACAGCG
AGTGACGGACTTTCAAAGGAAATAAAGgagaattttaaagaatatttggC
GCGTGATCAACGACGCTGGAAATATGCAGATATAGATGAGGATGGGGCGC
TAAATCTAGAAGAATTCCACATGTTTTCGAAGCCAACAAAATATGCAGAA
ATGGTGGATGTGGTTGCATACGAGGAAATTGAACATTATGATATCAACAA
AGACGGTTTCCTTTCCTTGGAAGAATACCTCAAAGCAATAGCTATGCCAG
CCATGCGACCATTGGACGAAAAGAAATTCCATGAAGAATATGACTTAGAT
AAAGATGGAAGGCTGAACAAGGATGAAGTAAAATTATGGAAGACACCAAA
ATTTTTCGATCAAGCAGAATTAGAAGCCAAAGAATTGATTCGTATTGCAG
ATGATGATCAAGATGGTAAATTGACAGTGAAGGAGATAGTTCATAACCAT
TTCGTCTTTGTGGGAAGTAAAGCCACCATTTCTGGAACAATGCTACATGA
TGAATTCTGAATGTATCGAAGAAGCACTGTATTGTTCTTACCATTGGTAT
TCTGCACCATGATTGGTGGAATCTTTGGTGGTGGGTTGAGGCCTGGGTCC
GATGAACATCACAAAGCATTCCTTGGTAAACTGAAAGATGAATATGATCA
TTTATCCGTTGAAGAGTCCGTTCGTAGATTGAGGTTACTCGCTCCACACA
TTGATATGAATAAAGATGGTTTCATATCTTCCAAAGAATTACAAATCTGG
GTTCGTGATAAATACACTTCTATCTTGGACTCAGAGGACATCGACTTCAA
ATTTCGTGAATTGGACATTCATTTTGATAACAGTTTAACATGGGATGAAT
ACACTGAAAGATATTATGGTTTGAACAATACAGCGAGTGACGGACTTTCA
AAGGAAATAAAGgagaattttaaagaatatttggCGCGTGATCAACGACG
CTGGAAATATGCAGATATAGATGAGGATGGGGCGCTAAATCTAGAAGAAT
TCCACATGTTTTCGAAGCCAACAAAATATGCAGAAATGGTGGATGTGGTT
GCATACGAGGAAATTGAACATTATGATATCAACAAAGACGGTTTCCTTTC
CTTGGAAGAATACCTCAAAGCAATAGCTATGCCAGCCATGCGACCATTGG
ACGAAAAGAAATTCCATGAAGAATATGACTTAGATAAAGATGGAAGGCTG
AACAAGGATGAAGTAAAATTATGGAAGACACCAAAATTTTTCGATCAAGC
AGAATTAGAAGCCAAAGAATTGATTCGTATTGCAGATGATGATCAAGATG
GTAAATTGACAGTGAAGGAGATAGTTCATAACCATTTCGTCTTTGTGGGA
AGTAAAGCCACCATTTCTGGAACAATGCTACATGATGAATTCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19413MSTRG.19413Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19413.1.p1MSTRG.19413.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19413.1.p1.exon1MSTRG.19413.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19413.1.p1.exon2MSTRG.19413.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19413.1.p1.exon3MSTRG.19413.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19413.1.p1.exon4MSTRG.19413.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19413.1.p1.exon5MSTRG.19413.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19413.1.p1.exon6MSTRG.19413.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19413.1.p1.exon7MSTRG.19413.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000221_pilongenomesc0000221_pilon:562422..566251 +