MSTRG.19400.1.p1 (mRNA) -

Overview
NameMSTRG.19400.1.p1
Unique NameMSTRG.19400.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000221_pilon:413370..416716+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19400.1.p1 ID=MSTRG.19400.1.p1|Name=MSTRG.19400.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3347bp|location=Sequence derived from alignment at sc0000221_pilon:413370..416716+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTGGAAAGGTTTCATGCGAAAAGGATAAGAAAGTTATGGAGTATTTCCG
TGCTATGTCTTTATTCAGCTttatcttttaaaaatctttttttttatatt
ttagaaaaccaaaaagatgaaaaataagcTATGAAAATATTTGTGTAAAG
ATGGCGTCAGCAGTTACGACAGCAAAAGTAAACAACCAGAACCATTGTAA
AGAAGATACGGCACTCgacctcaaaaagaaaaatgagagCCTCAGCAAGG
AGGTTGAACGCCTCACCGCCCTCGTTAGCAAATCTGAACGTAAACGACGC
AAACAGAAAATTGTGTACGAGAAAAACATGGAAAATTTAAGTATACGGTT
AGTTGACTTTGAAAGTAATTTACGGAAAGAACAAAAAGAGATACAAGATT
TGATCTCaaaaaaaGAGCAACAGATCAAAGTGCGAGAGGAACTCGTTAAA
ACTCTACGAGATAAACTAACGCAGCAATTTTGTAACCAATGCGGCTGTGC
AAATCCGAAAGTCGACTCCATGGACGTGGACTGGGAACTAGATATCGATG
AAGATAAAAACgaagtcatcaaaaaattacCACCCCTAGATCTGCCGCCG
CCCGAAGAAAGCAAACAGATTAGTTTCACTAACCACCGCCCATTCCGCCC
TAAAAGTAAATTGTCGCCCGTGGCGGAAGAAAGTGAGATTTCGTTTGGTT
CTTCATTGCGTGATATTCACGCTGACCTAACACCAGATCGTTTCCACGCT
GCCTTGACGGCTTCGTTAGGAAGTTTACTGGATAATGTTGAAGATGGGGT
GGAAACGCCAACCAATTCTATCGGAGGCGGGTCGAACGAGGACAATTCGA
ACGCCGAGGAGAAGTCTCCTGAAGACCAGTGCGATATTAATGAAGCTAAC
ATTGAAGAGACTGTTTCTGTACTTACTCCTGCTTTTGAGCAAGTTGTTGT
TAAGGAAAAGGTAGCTTCCCCTTCGAATGGTCTGTTTACTTTCAGTGACA
GACTGAGCTCAAACATTTTATCTCTAGTGAATCAGAATTTAGCTCAAAAG
AAAACGAAGCGTATCGACTCCCCTCCTAACAAAGGAAAAGAGAACATTTC
TAACATACAAAATTTCTGTGCGAATATCGTGACTAAAAATCTCTTAGAAG
CTATGAATGAAATTTCGGCTTCTAAACAAAAAGAGTGTGTGATTTCGTCA
TCCACTCGTGAACGCACTCCAACAGTGGATCCATCTTCAGACAAAATGAA
GCGTTTACATACTGCTGCTGTATCCTTTGTTGATCAGTTCATTTCCAATG
ATTTTATGAGTGAATCGTTAAGTCAAAGATCACTCTCACCGAGAAGAGTA
CCTCCGATGTCTTCAGATGAAATACCGGATGAGATAAGTCAGGAAGATTC
CATTCTTActggaaatgaaaaacaaagggaGCTCTTTGATCATGCAAGAT
TGGATACAGACATGAATCCCAATAACTCGACCTTGGTAACTGAACCTACT
TTAGATGATGATAAATGTGTCGTTATCAGGGAGGAAGAACCAACCGAAAT
TGTGAGTATTGAGACAAACGAGAAACGAACGAGCTTCAACGACAATGACC
AGGAACTGAGTGAAAAACGAATATCCAATGTGGAGGCAAGCGATCAAAGA
ATACCcgacgacgaaaacgaaacgaccgacgaacaacgacTGCCTACCGA
GCCGAATGATAACCGAACTTCGACGGAGGAACTGAACGGACATTTAAAAT
CTGACGAACCAAGTGAAAAACAAATTCCAGACAATCAAATAACCGAACAA
CAGATTCAGGACGAGCAACAACAGTCCATGGAGCCAGCTAACGGAGAAAT
TGAAAACGAGCACCAGCCGGCAGATGATACGAGCGACCACAAGCGAACGA
ACAACGAAAATTCTCCACCGAATGACGCATCGCCCGATTCGacgaaaagt
aagaaaaagaaaaaaaagaagaagaaaaaacgtaaaagTGTTAGTAACGA
ATCAGATGAATCGTTCGTTTCGGCTACCGGTGAAAACACTCAAGATACTT
CAGCCGATCAACCTGTCATGGAACGTATGAAATTACCCGTTGAAGACAAA
TTCAGCCTCACATTGGATGATCAGTTAGATTTGTTGGGTGAAAGTCCAAC
AAGCCCTACCCATAGTACGTTAGGTGAACAGCTAAGTCAAACTACAAAAA
TGTAATGATTGTAACGTATGTTTCAGTTTGTGGGCCAATTGGTGACtttt
ttagactattttactcgtttttagatgatttttaaaagaaacttagattg
ataaactttttttttattttgaaaattgagattttagaatcttttctttt
tatttatccGATTACCATACTACAGGAATATTACtatactagtcatttta
ttagcacgaattgaaaaattttgtgtgaATAAAGACTCCTATCCCTTAAT
TCAAACCAGTcgctgtttccttgaaaaagcagaaaaaatcgTATTAATTT
CAAATCGTGCacatttcaaggccgttaaatacttacctagtaatatttgt
gtaataaggtaatcgATTTTCAGGAATAAACCCTTGAATTCATAAAGTTG
GGTTCTCTTCGTATCTTTAACCGTGAACATGCTTTAACAAATGAGTCGTC
ACGTCAAAACCGCTGTCCATATTTTGTAGAGAGGTGTTTGGCAAGTCGAA
GTATCATGCCACTTAACAGCGACCGATCTACTCATGCCCCATTTTATTAT
TAAGTGAGTTGAAACAGGTTAATACCACATATTTCtgtaaaacccgaagg
gctagttGTCTTGCTTTAAGctctttcaagcaaaaaatgtgTCAGTGTCT
CAAAAGATATTGCTGctgttgttttcgaaaacctgcgaagcttcctattg
gtcaagcgctgaaatttttattgtaatgtcacgtgaccaaGGAATGATTT
cttacctaacctcggcacacttttcagccaaagcacgatatctagccctt
cgggctttataaatctatggttaaTACCCTTCTTAAATAGCCTGACTGCt
cactaccttaagggaactaattttttcgggaactaatttttgcggttttt
gcggatttggtccgaaaccgcaaaatttagttcTCGCACAAATTTTGTCG
ACCTACGGAccacaaaaattaattcccgcaaaatttttcgaaattggtca
tccgcaaaaataaatttaacgataaattttctttaagtttcatttcaaag
atttttttgctAATAAGCACAACTGCTCTTTCTTTCTCTCTTTGAGCCTT
TCTACTGTTCTGAACGACTCAAGATCTATTTTTGTTGAAGCTCTTTT

Coding sequence (CDS) from alignment at sc0000221_pilon:413370..416716+

>MSTRG.19400.1.p1 ID=MSTRG.19400.1.p1|Name=MSTRG.19400.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2055bp|location=Sequence derived from alignment at sc0000221_pilon:413370..416716+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCGTCAGCAGTTACGACAGCAAAAGTAAACAACCAGAACCATTGTAA
AGAAGATACGGCACTCgacctcaaaaagaaaaatgagagCCTCAGCAAGG
AGGTTGAACGCCTCACCGCCCTCGTTAGCAAATCTGAACGTAAACGACGC
AAACAGAAAATTGTGTACGAGAAAAACATGGAAAATTTAAGTATACGGTT
AGTTGACTTTGAAAGTAATTTACGGAAAGAACAAAAAGAGATACAAGATT
TGATCTCaaaaaaaGAGCAACAGATCAAAGTGCGAGAGGAACTCGTTAAA
ACTCTACGAGATAAACTAACGCAGCAATTTTGTAACCAATGCGGCTGTGC
AAATCCGAAAGTCGACTCCATGGACGTGGACTGGGAACTAGATATCGATG
AAGATAAAAACgaagtcatcaaaaaattacCACCCCTAGATCTGCCGCCG
CCCGAAGAAAGCAAACAGATTAGTTTCACTAACCACCGCCCATTCCGCCC
TAAAAGTAAATTGTCGCCCGTGGCGGAAGAAAGTGAGATTTCGTTTGGTT
CTTCATTGCGTGATATTCACGCTGACCTAACACCAGATCGTTTCCACGCT
GCCTTGACGGCTTCGTTAGGAAGTTTACTGGATAATGTTGAAGATGGGGT
GGAAACGCCAACCAATTCTATCGGAGGCGGGTCGAACGAGGACAATTCGA
ACGCCGAGGAGAAGTCTCCTGAAGACCAGTGCGATATTAATGAAGCTAAC
ATTGAAGAGACTGTTTCTGTACTTACTCCTGCTTTTGAGCAAGTTGTTGT
TAAGGAAAAGGTAGCTTCCCCTTCGAATGGTCTGTTTACTTTCAGTGACA
GACTGAGCTCAAACATTTTATCTCTAGTGAATCAGAATTTAGCTCAAAAG
AAAACGAAGCGTATCGACTCCCCTCCTAACAAAGGAAAAGAGAACATTTC
TAACATACAAAATTTCTGTGCGAATATCGTGACTAAAAATCTCTTAGAAG
CTATGAATGAAATTTCGGCTTCTAAACAAAAAGAGTGTGTGATTTCGTCA
TCCACTCGTGAACGCACTCCAACAGTGGATCCATCTTCAGACAAAATGAA
GCGTTTACATACTGCTGCTGTATCCTTTGTTGATCAGTTCATTTCCAATG
ATTTTATGAGTGAATCGTTAAGTCAAAGATCACTCTCACCGAGAAGAGTA
CCTCCGATGTCTTCAGATGAAATACCGGATGAGATAAGTCAGGAAGATTC
CATTCTTActggaaatgaaaaacaaagggaGCTCTTTGATCATGCAAGAT
TGGATACAGACATGAATCCCAATAACTCGACCTTGGTAACTGAACCTACT
TTAGATGATGATAAATGTGTCGTTATCAGGGAGGAAGAACCAACCGAAAT
TGTGAGTATTGAGACAAACGAGAAACGAACGAGCTTCAACGACAATGACC
AGGAACTGAGTGAAAAACGAATATCCAATGTGGAGGCAAGCGATCAAAGA
ATACCcgacgacgaaaacgaaacgaccgacgaacaacgacTGCCTACCGA
GCCGAATGATAACCGAACTTCGACGGAGGAACTGAACGGACATTTAAAAT
CTGACGAACCAAGTGAAAAACAAATTCCAGACAATCAAATAACCGAACAA
CAGATTCAGGACGAGCAACAACAGTCCATGGAGCCAGCTAACGGAGAAAT
TGAAAACGAGCACCAGCCGGCAGATGATACGAGCGACCACAAGCGAACGA
ACAACGAAAATTCTCCACCGAATGACGCATCGCCCGATTCGacgaaaagt
aagaaaaagaaaaaaaagaagaagaaaaaacgtaaaagTGTTAGTAACGA
ATCAGATGAATCGTTCGTTTCGGCTACCGGTGAAAACACTCAAGATACTT
CAGCCGATCAACCTGTCATGGAACGTATGAAATTACCCGTTGAAGACAAA
TTCAGCCTCACATTGGATGATCAGTTAGATTTGTTGGGTGAAAGTCCAAC
AAGCCCTACCCATAGTACGTTAGGTGAACAGCTAAGTCAAACTACAAAAA
TGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19400MSTRG.19400Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19400.1.p1.exon1MSTRG.19400.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19400.1.p1MSTRG.19400.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000221_pilongenomesc0000221_pilon:413370..416716 +