MSTRG.19186.1.p1 (mRNA) -

Overview
NameMSTRG.19186.1.p1
Unique NameMSTRG.19186.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000216_pilon:138225..142030+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.19186.1.p1 ID=MSTRG.19186.1.p1|Name=MSTRG.19186.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3806bp|location=Sequence derived from alignment at sc0000216_pilon:138225..142030+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGACCTTGAACTCAAAAACTGTTAACAATAAAgttcaaattcataaaaa
tttgcTTTACTGGGTTGCTTGAAATTTATTCGACTCTTGTCACGTGGTTC
AAAAATGGGCCAATCAAATCGCAAGTTACCACCAACACAATTGGAAGACC
TGACCAGGAAGACAACTTTCTCACGTGAAGAATTGAAAAGTTGGTATGAG
AAGTTTATGAAGGATTATCCAAATGGTTTTATgagtcaaaaacaattttt
gaaagtttatcaAGATTATTACAAGAAAGGTGACCCGTCTGGTTTCTCAG
AGCATGTGTTCAGAGTGTTTGATGCCAACAATGATGGAAAAATTGGTAAG
TTTCTTTCGTTTTACGGTTTACTTACCTAAAGGGAAAAAATTGTCATTCC
CCaaaattgtgctatttttcGGCTATCCCCCAAATTAGATTCCCGCAAAA
ACTTCTTACTTTAAAGTTTATTCATCGAACTTTATAACTACCGTTATGAC
GTGAAGATTGCCAATGTCTCTAAATGATAGACTGggctttttagtttttt
gttgaTTCTTCCTTCACAGAATTATTTGCAAAATCCACTCAAGTCCTTAT
TTTAGAGTTTGGTGAGTAAATCCCGATGTTAAGGCCAATCAACCTCGTct
ccgtgtatcccaggctttatttacgttactgatgggtGCCAGAGATTCTG
gagctatcagtaagcataaaaaggCAATTAATAGGCAGGAAACAAGGCAA
AAGGGCGCTGCAATCTCTTCTTTAGCTCCAGTGCTTTTTTCGtgtttgga
gaaaagattatgtCATACAGACTAACTTTCCCCCAAACGCGAGACTTCAG
TAAAGAAATTTTCCCCATTGGGGTTCGTTGGGGTTAACAGGGTTAAAGTG
AGGTTCCTTTCTGTCCCGGATGGTGCACTTAGGCAAATGTATGTCATGTG
AGAACACCTGTTTTTATGATAGTCGTGACTTATTTTTCCTCGATAACTAT
CTTcgaatgacaaaattttttccTTCCTCGAtctaatattttctctttca
cAATCATTCAAATTCAGAAAACAGAAATATTATCTGTTGCTCTGAACGAA
ACTTTTCCGTAATAAAAATGCTCTGATAATCAAACCGCACCTCGCGACTC
TTTCTTTAGACTTTCTcttgttacacgttttttatctTCACCCATAATTC
TTATCACCTATCATATATCAAAATCTGTTATCCTATGTCGCTATGTGACT
ATAGACAAACAAAGAGTACCTTCAAATTTggggggggggAAACCTCTGAA
ACCAGACATGCTAGATGAAAAACTGACCGCACCCAAAACTTAACTTACCA
ACATGAGCTAAGTTTTTTAATACTTACTGGTTTTTTATCCGTTATACAAT
TTTTCTGTCAGTCCAGAAATTCTGATTCAAGCAAGACCTTATTCAAATAg
agcatcaaaacaaaatataccTTCCCAAACGGACCCTATCGTGACCTTTT
TTGCCTTAGCCAAAGTCgagaaaatttcatttgaagTTAATGCATGTGAA
TCCtttttttttCGGTACCTGTCTTATTAAGAATGTATTTTAAACACCCC
CTTTTCCCAGACCCGGgggaattttttcagccagtggagataaaaataac
ggactgaaactcgatggggattgatattcccatagtttttatggctgggg
atttcaattcttttgttttcaaatcagaaaattcaatagGGGATGgaaat
gaaatgaatgaaaatagcataatgttttgcagtgaggattggtttgttTG
ATTATGTTCCAGTGGAGACAAatattggaggataattttcaatCGGAGAC
GATCTTTTTCAAGTGGGAAGGGTtccaagtgggtctgtgagaagggagta
tTTTAATGCTACAACCCTTTATAACACTTTAGAGATTATCATCCTTGGTT
ATTGTGTATGAGACCAGGGCTCGATTCCAAGTCAACTCCAAAGGCAGTGA
TCTGAGGAGTTTATCATAGACTACTTAATGAAGTCAAGCACTAAGCTTTA
TATAAAACCTGGAGGCAGTTTTTAAtcccaaaaatctttgatcgaagttt
tttttaaagtagtaccctaatggtagcactactcaatagtggtGTAAAAC
TTTTCCTACTTTTCCTTCTTGAACACTTGAGATGTAGCGCCGCTTGACGT
TAAAGTCTCAACACTACAATGGTCTCTTTGCAAGTACCAGctccaaaaaa
actccgataaaaaTGGCAGATCTAGGGTTTACGCAGGTCAGCGAAGTCAA
GTGATGGTAGGTGTGAATAATTTATATTTTCGTATGTCCTATTCTTTAAT
TCCATAGATTTTCGCGAGTTCATTTGCTCCCTATCGATGACAACTCGAGG
ATCAATCGATGATAAACTCCGCTGGGCTTTTCACATTTACGATGTTAATG
GAGACGGTCGTGTGTCTATCAACGAAGTTTCATCGATTGTGAAAAGTGTT
CAAGCTCTGGCCAATGTCCATGACAGTAATTTGAGTGAGGAAAAACTTCa
acaatattttggaaaatgcGATAAAAACTCGGATGGAACTTTAACTGTTG
AAGAATTTGTTAGAGGGTCACGTCAAAATCCGTTGTTCATGAAATTGCTT
ATTGATTATATTCAGTAGTATGTAATTATTAAATCACAATTTTTTGTAAT
CTAGCCGACCCCTAGCAGATCACCGCTAGATTCAatcatctcattttaaa
actcaTTCAAGAGAGATGTTGAAGTAGACAATCCCGAGGCATTGTAAGTA
GTTTTGGAGCTGGCTATAAcgctttggaaaatatttttcataaaattttg
tttgcttACCTACCGAGATAGATGTTAAGTGAGGAACCTTCAAACATCTG
TTTTTTCGTGATCTGGAAAAAACCCCTACTCACAACGTGTAACGTCATTT
TAATGCAGTTGAAAAGTTCTAATAGGGAAACTGTGCCACAGCCTTACTGA
GGGCAATATTGATGTCCCATTgggtgaaaaactttctttccgaaatttcc
aaaatttgaaaatctcatGTTCCCAGGAATTTCCAATATTCAAAGTGACC
CTTTTTATCGATATCATCAGAGAAATCTATTGCTTATTGACTTTGTCTAT
TAGTTTCTCGGCCCTTTGGTCGGCTAAATGATATATAACTCCGGCTCCTT
TCATTGAATATCACTTACCTCGAGTGAGTTAATAAATCGCAATAACTAAT
TAAAGGCCACAAAATAtctgttttttgtttcataatttTGGGTAAACtca
aacccagtcccttagtctGCTCTTTTATGATTTCGATAGCACTAAatgtc
catcagtaaaatcaacaAGTGGTCCTGGGTACGAGATTGCTCAGTTATTG
AAAAACGAACATATGAAGATTTTTCTTCAgattcaatacaccttttcgac
cgtaatcgcgcggtcaggcgcgtgccactttatcaaatttaccaccataa
actcgatccaatcctttttttacacttttttctattgtcttcagGCGCGA
AAAAAGACTgtgacggttttagggtggtaaaacggacaaaaaaattcccg
cgcggcaattggcggctacggttgaaaaggtgtattgagtTTGTTCtcag
ttttatttcaaaaagttattaGTGTATCAAATAATGACTCGTTATAAAAA
TTATTGTATCTGTTGTATAGTTTGTAATATAAAGTTTTGtgtaatttcaa
attattcaaaaataatctaTATTAATGGTTGGGTTTGTACAGACCTTTTG
TTGTTA

Coding sequence (CDS) from alignment at sc0000216_pilon:138225..142030+

>MSTRG.19186.1.p1 ID=MSTRG.19186.1.p1|Name=MSTRG.19186.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1104bp|location=Sequence derived from alignment at sc0000216_pilon:138225..142030+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGCCAATCAAATCGCAAGTTACCACCAACACAATTGGAAGACCTGAC
CAGGAAGACAACTTTCTCACGTGAAGAATTGAAAAGTTGGTATGAGAAGT
TTATGAAGGATTATCCAAATGGTTTTATgagtcaaaaacaatttttgaaa
gtttatcaAGATTATTACAAGAAAGGTGACCCGTCTGGTTTCTCAGAGCA
TGTGTTCAGAGTGTTTGATGCCAACAATGATGGAAAAATTGATTTTCGCG
AGTTCATTTGCTCCCTATCGATGACAACTCGAGGATCAATCGATGATAAA
CTCCGCTGGGCTTTTCACATTTACGATGTTAATGGAGACGGTCGTGTGTC
TATCAACGAAGTTTCATCGATTGTGAAAAGTGTTCAAGCTCTGGCCAATG
TCCATGACAGTAATTTGAGTGAGGAAAAACTTCaacaatattttggaaaa
tgcGATAAAAACTCGGATGGAACTTTAACTGTTGAAGAATTTGTTAGAGG
GTCACGTCAAAATCCGTTGTTCATGAAATTGCTTATTGATTATATTCAGT
AGATGGGCCAATCAAATCGCAAGTTACCACCAACACAATTGGAAGACCTG
ACCAGGAAGACAACTTTCTCACGTGAAGAATTGAAAAGTTGGTATGAGAA
GTTTATGAAGGATTATCCAAATGGTTTTATgagtcaaaaacaatttttga
aagtttatcaAGATTATTACAAGAAAGGTGACCCGTCTGGTTTCTCAGAG
CATGTGTTCAGAGTGTTTGATGCCAACAATGATGGAAAAATTGATTTTCG
CGAGTTCATTTGCTCCCTATCGATGACAACTCGAGGATCAATCGATGATA
AACTCCGCTGGGCTTTTCACATTTACGATGTTAATGGAGACGGTCGTGTG
TCTATCAACGAAGTTTCATCGATTGTGAAAAGTGTTCAAGCTCTGGCCAA
TGTCCATGACAGTAATTTGAGTGAGGAAAAACTTCaacaatattttggaa
aatgcGATAAAAACTCGGATGGAACTTTAACTGTTGAAGAATTTGTTAGA
GGGTCACGTCAAAATCCGTTGTTCATGAAATTGCTTATTGATTATATTCA
GTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.19186MSTRG.19186Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19186.1.p1.exon1MSTRG.19186.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.19186.1.p1.exon2MSTRG.19186.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.19186.1.p1MSTRG.19186.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216_pilongenomesc0000216_pilon:138225..142030 +