MSTRG.190.1.p1 (mRNA) -

Overview
NameMSTRG.190.1.p1
Unique NameMSTRG.190.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000001_pilon:3570569..3576287+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.190.1.p1 ID=MSTRG.190.1.p1|Name=MSTRG.190.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5719bp|location=Sequence derived from alignment at sc0000001_pilon:3570569..3576287+ (Clytia hemisphaerica_ch_hm2_pilon)
cTAGTAATATATATTCAGGTGCAATTCACATAGAACGTGCATAGTGATGA
AGAGGGGTGTCCTCaaaaaaaCACAtgctctttgatttgatatgaCTTTT
GTACAATGGAGAAAGGAACTATATGCACCAAGTGTTATATGCATTATATA
TTTTGTGTTTGGCTTTTTATTTCAATATAAGCATTTGTCAGGCTAATCGA
TTCAAAGAGACTTGCCTgaatcgcttcgcaattcttatacatatacattC
ATAAGGAGAAATCAAAACCAGGACCAggaaagtattttttgaaataaaca
aGGGTGTACAAACAAGTTGATTTCAGGCCTACGGccattcttatacatat
acactaggcCTACTTTTTGTATCTTTAAAAACAGGCTAAGAAATATTCAG
TTTTATAAAAATTCAGGGAAAGTCCTGTTTTTCATAGAACATTCCAGAAA
CACTCATTCTAAATGAGGGTAAAATGAAATTGGAAAGGGAAATCTTAAAC
TAATGTCAATGAAAAGTACAGAAATAAAGGGGAAAACCTATGTGAAACTG
TTTCTATAGTTATGTTTGAAATATTATAGATGAATAACATTTATCAATAG
TATGTAACATTAATATTTCTTATCTATTATCATTTTGttaaaagggaaat
tcctaaAAAGTTGTATAAATGTATGGACAAATTATAATTTCAAGCTATTG
GAGTTAAAGCTATGACAGCATAGGTAACAGAAGAATATAAAGAACTAGAA
AAAGTGGACAAACTCAATTTTTCATAAGGAAAGAGGTAAGATTAAAATCA
ATTAAGTGATTTTAAAATCGAGAAGGAAAAAGAGAAACAATgttttgttt
ggaaaatttaattttaaatttatatgCAGAGCTCAAAGAATCCTATAATT
TATATATTCAGATAACAGTTTGTTAATCAGTTTGTTAAAGTATAATCACA
TAAACAAAAGTATTGCACATCAAGGGGCATTCTAAAATTAAAACACCTAG
ATATAAAAAGTGTAGTTGAGAAAATAGACCAGacatttcttttataatat
GCAACCTTTGAAGTAgtaaaataacaaacaaaataatattGGTGTCACTT
TGAAACAATCAATTTCTTAGAACTATGTAtgtaacaaagaaaaatactgT
AAGTGCTATCATTTTTTGATGAGCtgtgaattttgtttttttatagaagG
ATAAATAAAATGGAATGAGTTGGCTGATGTGCAGAAATTTTGTTCAGCTT
GTCACTTATCAAAATTAACAGGTtaccagaaagtcaaaaaaatactGAGA
ATGTGAAAGGCTAACATCTGCAACAAAGTAAGGCCATATGTaatgtagtt
tttttaatatAGTTAAATGATGAATGGATTCATTGGTAAATAATTTGACG
CGCAGCAATAAatgattttacttttgaaaccactttttttaaaggaaaca
ttcaaaaaaaaagtgttttcaaaGCTAATCTAAAGTTTAACacgcaaaat
ttaaatttaacacTTTCCACTCTATATTCTAACAGTTTCTCAAAGTTTAA
ATTCTAGCATTTTCGAAACACTAGTACAACTCAGCTTAATCTGGTTAGat
tgttaaaaaattgtaaaattagaGTAGATTATATATTATTACATGTAGTG
TGGTTATCAAGGATAATTGcaggaaaactttttatttttccttgtAGAAA
AAACCACTTTGTTGAACATCCCTTTTTGGGGCAGTTTCTCTCTTCCCAAG
GCAAAACAATAAaggccaaaacttttaaaaacgttAATCTATTTTCAAGC
AATATCATTGATACTATTCgatactatactatactatactcTCCAGTTTA
AATGGAAGACTTaaaaaaaGGTATGGCGGATTTCCTTAGTTGACTCTAAA
TAACTTTGGACCAAAATTCAGCCGAAAGGCAAACTTGTGCCTGAGAGTAA
GGTAAGAAAACTGACTATACCTGTCTTGACTTCTATATAATTATATATAG
TTTGTGGAGAGCCTCATAAAAACATTGACCTTTAGGGTTTGCCTTAggag
aaacaagcaacatgctgaatggacctacctaatgattaacatcagatgaa
aataagAaaaaagtgacaataattgtacaaaaattcagaatggaaaaata
aagcttgtgtattgaataatgtaaaatggtaaaaaggaatttccccaaat
acgaaaatcacttaaaccattcaggcccaaaaaaccttttaagctgtttt
tggcccaaatttgcccaaaaaaattttcctcaaaaatccggctccgtcac
attttgggcgttgccattttgcatcattgtgcaaaacatcagaaaaaaat
tatgagtcaacgttgagaaaagctatattttcttatttggttaaagggaa
tttccccaaaatacgaaaatccgtcttttacagcgaataaaaattttcca
ggaaaaaccacttcagccattctttagagaatcttgtcctccatctttgt
acaaaaaatcagaaaaaagtaatgacaggattttacacaagtccaaaaaa
ccctatttttaggcagtttttggcccaaatttgcccaaatatattttttt
tcgaaaatcgagctccgtcacattttaggcattgccattttgaatcattg
tgcaaaaaatcagaaaaaaataatgagtcaactttaagaaaagctatatt
ttcttatttggttaaagggaatttccccaaaatacgaaaatccgtttttt
aaggcgaataagaattttccgggaaaaaccacttcagccattctttagag
aatcttgtcctccatctttgtaCAaaaaatctgaaaaaagtaatgacagg
attttgcacaaagtccaaaaaaccctatttttaggtagtttttggcccaa
atttgcccaaatatattttttctcaaaaatcgggctccgtcacgttctgg
gcattgccattttgcatcattgtgcaaaaaatcagaaaaaactaatgagc
caatcctgagaaaagctggtaacagacggacggacggatgaacgaacgaa
cggacatgggttaatttatagaacctccagcCCGGCCCGGAGGTAGGTct
gggtaggtccaaaaaatgctGTGACAACAAAAGTGAAGCAGTGTGCTATT
TCAAAAAACCTGAGCAAAAGGTGTGCTCAAAATAAAGGTTACGCTACATA
ATGATTCCTTGGGACTCCCCAAAATACATCAGATAAAAATGGCCACTATA
GTCACAACAtttttttACTGATATAAAGGTGCCCTGATGTCACCAgaata
atataaaaagaaatgaaattttgaaaacttgaatGATCTTATtaaaatga
tgaatttcttgcatTGCTCTAGACTTTGTGAGTTAGGTAAAAAGTTCTAT
TCtttttttCAGGATTGCAATGGAAGAAAAACTTGAGAGATACATTCAAT
CCTATGTTGACGAATGCAAACCTTCGCAAAATGAGATCAGTCAAGGCAAA
AAAGTGATGAACAATATTTTCAGACTTCTTCAAGCTTCAAGAAAATATTC
CATTGACCGAGAAAGATTGGCAGGGAGTACAGCTAAAAAGACAGCCATTT
CTGGTCACATAGATTTTGATTGTGTTGTGTTTGTGAATCCTCAAGACAAA
CAAGGCTTCAATGTTAAAATTCCTGAAGTTCTGGATAATTTTGAAGAGAT
TCTGATATctaatgaaaaatttgatctggaagaaaaagatttcaggaaaa
CACCAAGACGGAATCCAAGCACATTACAGGTCACAATTGATGATATTGGT
TTTGATATCTGCGTTGGTTTGAACCAAACATACCACAGTAACCATAGAGA
TAAAAAAGGGCAGAGCGTTGCATTTGTTGAAAGAAGTATTGAGTTTACCA
AACAAAAGAGTGCATTTGCCCATGAAGTTGCTCGCTTGGCAAAATTTTGG
AACAAGACAATTGTCTTAGAGTTGCTGACACCTAATTCCTATGTTTCTGG
AAGATCCACAATCATGGAGTTGATTGCTTTTGCAGCAGCAGCTGAAGCgg
ctgaagaagaaaaacatgcAAGACATAGGTTGTCCCATCTGAATGCCTTC
AGAAAATTCCTTGTAATGTTGAGAGATATTGAGGAGCTCAAGATATCACA
CAGAAATTTCTGGAGTAGCAACGGAATTCCTAATGTTGGTAACCATATGG
CCCCCTATCTTATTGACCCATCTGACCCAGAAAATGATTTGCTGGAGACA
ATTAAGCctgaaataagaacaattttctctCAATGTGCAAGCACAACACT
AGAGCGTTTGGGATTGTATGAAATGGGAGGGATCAATGACATTTTTGAAA
TGTATCCATCATGGCATGGAAACAAATTTGCTCGATGGGAACCAAAAAAT
TGGCTGGTAGGGACAGTAACAACAAACAGTGCATTTGTGGATTTGAAATA
CAACAAAGGAATGGTTAACAACAACCAACATAATGGTCGTGTAAAGtggc
ttgaaaaatatttgatccCTCTTGTGAAGCGAGCGGTGATTGAGAGCGTA
cacaaagaaaaggaaaagattAACTCTACCGTTTCCAGCACAAGTACAAG
CCTAaataaaaaagttgtcaaagaaaaagttgaaagttcAATCGATGAAG
AGATTTTGAAAACAGATACCAAATGGAGTCCGTCAAGTGAAGGAGATGAA
AGTCGAATGGTGACCATCACCATTCCATACAATGATGCAGGAAAAAATGC
AATAAGAATCAGCTTTGACTGAACCCTTTATAGAATGCTTTGGGCAATAA
AACATACTGGAACAGAAACATTTGATTAGATTGGGAACAAACTCGTATTT
AAGGaaatgataaacataaataaataaaaacaaatgaaaaagcactgaga
tttgcacaaacaattttgaaaaaatgaaaagaaaaatattctggtttgta
aactaaaaatttagaaattcaaaaaacttcatttatttttatgttaattG
TATTATGTCATAATTATCATAATTACATATAGGAATTAGCTTGCTTTGCA
TGACATTATGATTAGAATGATTATGATAAATTGTATGGTTGTAGTATAGT
ATTgcacaaatattttaaaatttagtagATAACCCAATTTGTTGTTTGAT
TCCATGCTTTGACCACTCTCTAAATGAATAGCCAATGTTGTGTATTGAGC
ACAGCAATGTAATAGCAAATTCATTTTACTCTAATTATTTTGCACAGATA
TGTTATTGATCTCCTCTGCAGATATGTAAAATCTACTCTAATCAGTGGTT
GATCAAGAtacatttcttgaaatttacatttttcaaaaagaacatGCAAC
AAGTggtacttttatggacctacatggttatcaaaactaatcaatgaaca
ttgaaacaatctgaaacaatgaaacacataagacataacgggacaaaata
caaaaaaatataatgaaagcatatctattgggagaaactattaacactat
tgaaaaagacttttgaaaaagaaataaacaagtgatacttttatggacct
acctggttatgcatttaacacataccaggtgcaccaaaaaaagatTACAG
GTTTgttgagatattgtgagcttcaggattcaaattttttgttcattctt
ttttaatcgtatataggatgctctaacttgaattttgagctatcatacat
taggtttgaaaaggTAATT

Coding sequence (CDS) from alignment at sc0000001_pilon:3570569..3576287+

>MSTRG.190.1.p1 ID=MSTRG.190.1.p1|Name=MSTRG.190.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1353bp|location=Sequence derived from alignment at sc0000001_pilon:3570569..3576287+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAAGAAAAACTTGAGAGATACATTCAATCCTATGTTGACGAATGCAA
ACCTTCGCAAAATGAGATCAGTCAAGGCAAAAAAGTGATGAACAATATTT
TCAGACTTCTTCAAGCTTCAAGAAAATATTCCATTGACCGAGAAAGATTG
GCAGGGAGTACAGCTAAAAAGACAGCCATTTCTGGTCACATAGATTTTGA
TTGTGTTGTGTTTGTGAATCCTCAAGACAAACAAGGCTTCAATGTTAAAA
TTCCTGAAGTTCTGGATAATTTTGAAGAGATTCTGATATctaatgaaaaa
tttgatctggaagaaaaagatttcaggaaaaCACCAAGACGGAATCCAAG
CACATTACAGGTCACAATTGATGATATTGGTTTTGATATCTGCGTTGGTT
TGAACCAAACATACCACAGTAACCATAGAGATAAAAAAGGGCAGAGCGTT
GCATTTGTTGAAAGAAGTATTGAGTTTACCAAACAAAAGAGTGCATTTGC
CCATGAAGTTGCTCGCTTGGCAAAATTTTGGAACAAGACAATTGTCTTAG
AGTTGCTGACACCTAATTCCTATGTTTCTGGAAGATCCACAATCATGGAG
TTGATTGCTTTTGCAGCAGCAGCTGAAGCggctgaagaagaaaaacatgc
AAGACATAGGTTGTCCCATCTGAATGCCTTCAGAAAATTCCTTGTAATGT
TGAGAGATATTGAGGAGCTCAAGATATCACACAGAAATTTCTGGAGTAGC
AACGGAATTCCTAATGTTGGTAACCATATGGCCCCCTATCTTATTGACCC
ATCTGACCCAGAAAATGATTTGCTGGAGACAATTAAGCctgaaataagaa
caattttctctCAATGTGCAAGCACAACACTAGAGCGTTTGGGATTGTAT
GAAATGGGAGGGATCAATGACATTTTTGAAATGTATCCATCATGGCATGG
AAACAAATTTGCTCGATGGGAACCAAAAAATTGGCTGGTAGGGACAGTAA
CAACAAACAGTGCATTTGTGGATTTGAAATACAACAAAGGAATGGTTAAC
AACAACCAACATAATGGTCGTGTAAAGtggcttgaaaaatatttgatccC
TCTTGTGAAGCGAGCGGTGATTGAGAGCGTAcacaaagaaaaggaaaaga
ttAACTCTACCGTTTCCAGCACAAGTACAAGCCTAaataaaaaagttgtc
aaagaaaaagttgaaagttcAATCGATGAAGAGATTTTGAAAACAGATAC
CAAATGGAGTCCGTCAAGTGAAGGAGATGAAAGTCGAATGGTGACCATCA
CCATTCCATACAATGATGCAGGAAAAAATGCAATAAGAATCAGCTTTGAC
TGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.190MSTRG.190Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.190.1.p1MSTRG.190.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.190.1.p1.exon1MSTRG.190.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.190.1.p1.exon2MSTRG.190.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.190.1.p1.exon3MSTRG.190.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001_pilongenomesc0000001_pilon:3570569..3576287 +