MSTRG.18963.1.p1 (mRNA) -

Overview
NameMSTRG.18963.1.p1
Unique NameMSTRG.18963.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000210_pilon:522130..526255+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.18963.1.p1 ID=MSTRG.18963.1.p1|Name=MSTRG.18963.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4126bp|location=Sequence derived from alignment at sc0000210_pilon:522130..526255+ (Clytia hemisphaerica_ch_hm2_pilon)
CCGCGTACGAAAGATGAAAACGCGTTTTAACCGCGGGATCTGGGGCTCAT
TTTAGAATTAAAGCGACACGTGAAGTTCTTTTCAAGATCAAATTCATCGC
AGAAAGACCTGTCTAAAATTTGGAATTATAACAAGTAGCTCTACCCTAAA
ATGGTAAGAATTCTTTCACATCAATCTCAGTTAAAATTCGACAAGATATC
TATCATATATAGCAATGATGACACACTTGCCCTCAATGATGCATTGATTT
GCATTCTTGATTAAAAGTATGAAGTCTGAGTTGTAGTGTGAGAATTTTCA
CAACAAGATTGTTAGCCTGTCTACAAGATTGTCTGCCCACACTTTGTCCG
TCCCCATCGtcttgggaggtaaacaaactgTTTCACCTGTGTTTCTTTAG
GGGTTGAAGTGTCAGGAGGTACTGGATCCAAAGGGAGACTTTTTAAATCA
ACTTGGTCCTGTTTAGCAAGAAAAGATTTCTATTtcaatttggttgagtt
gcaggaggatttgaggcccattttcgcaactatagatgctttcaatgagc
gccccatcagcaccttggactgactacccaattcccctcacatggcatag
gttgacccaggcgaaggttcattcacttaccaagtgaaccgctgcgagtg
ggaatcgaacctttgtttttttactaaaaCTTCATCTTGGGTCATTTAGC
ttaggggccgtcgacattTGACTGTcaaattttttaacggcatttggccg
ttaagGGAGGGGAGGGGGTCGACCATGTGCCGTTAAGGGAAGGTCGAAAA
TCTCTTTAGGGGTCAACTCACCACATATCAATTCTTTTCAccagaaaata
ttgatttttgagacgtttatttcatacaaatgttactttccatatttctg
cTAAAGTCACATACCTAAAGTATTCACTTCgctattttttagaataattt
taaccaaaacaaacgacccgatgtttatgtctcgtgttccatttgtttag
acggtccgcgcggcccttgaatttcgcagacggtcggtcttttttctttg
aaatgccgCTATTCTTTCGATTATGATTAGGGAGATAATTAATTCGTGca
actttcagaaaaaagtttagaaataatCTCCgttattttaaaaatgtaaa
cTGAGCGAAGCCGTAGCgatattaaagatggctgacgaaacatcgatgaa
agtgaaggagaaaattttgagttttatcgatttttgacaattttttaact
ttagagaatttgatggccgttaacgtagagggggggagggggtcagaacC
ATTcgaatgtcgacggccccttagAAACTTATCATTTAGGAAAAATATGA
CTTCGTCTAATAGCCGTTCCTTCGTCCAAACCAGAGGTTATTGATAGGAC
CTTCCCAGCACTCTGGAAACTTCCAGAGTATTCCGGGTTCCAGAGTATTC
CGGGTCAGCGAAAACAAcactgttttttatttttctctccaAACAGTTCC
AGTATCTTACGGTGTTCCGGAGCACGGAGCACGAAAAAACAGCACTTTTT
GCTCTGGACAATTCCAGAGTGCTGGGAGGGTACTGTATTAATTAggcttt
ttctattttaaatcaTACAGGGGTTATTGAAAAACTTCTAAGGGGATATG
ATTCatttttcagaatcttcaaggggtcaaaacaaaatttcatcttCCAG
GGGGTTCTTCCTCAACTTTCCAAGAGTGGGTGAAAAGTAGATTCccctaa
taatttttcttttttgaaatagctctttggtttgaaatttttccaatttg
tatacattattatttaaatttttattttcaggcgGCCCGCCCACTTGTTT
CTGTTTTCAATGAGCAAGGAGATGTCTCCAGCCAAGTAACACTCCCAGCT
GTCTTCAAGGCACCAATCCGATCAGACATTGTCAATTTTGTCCATACCAA
CATGGCCAAAAATTCCAGACAACCCTATGCTGTCCACAAACATGCTGGTC
ACCAAACCTCAGCAGAATCATGGGGTACTGGTCGTGCTGTTGCCCGTATT
CCAAGAGTACGTGGTGGTGGTACCCACAGATCTGGTCAGGGTGCCTTCGG
TAACATGTGCCGTGGAGGACGAATGTTTGCTCCAACCAAAACATGGAGAA
GATGGCATCGTCCTATCAACCAAAACCAACGAAGATATGCTGTCTGCTCA
GCAGTTGCTGCTAGTGCTCTTCCACCCCTTGTCATGGCCCGTGGACACAA
AATTGATGGAATTCCAGAAGTTCCAGTTGTTTGCTCTAATGCTATCGAAA
gcttcacaaaaacaaaatcagctGTTGCTTTACTAAAGAAAATTAACGCA
TACGATGATGTACAAAAATGTCAAGACTCAAAGAAAGTTCGCGCTGGAAA
AGTAAGGGCTTAGATATTTTCCCATAATCACTTGTATATTGGCTATGATG
AACTTACTTGCCCTCAATGATACATTAGTTTGCTTCAtgattatttatat
ttttctgagTCAATTTTAGGATGGTTAagatgttttgtatttttttaaac
aaaaactttagAAATACTATATTCTTATTGCTTTAGGGTAAAATGAGAAA
CCGACGTTACACAATGCGCAGAGGACCTCTTGTTGTTTATAATGAAGATC
ACGGCATCCAACAAGCTTTCCGAAATTTACCTGGCGTTGAAACAATTTCT
GTTGATCGACTAAACCTTCTCAAACTGTGTCCTGGAGGACATCTCGGCCG
GTGAGTGAtatgaataattttaaatttacacttaaaaaattttcacacct
tgagcgtGATGAcgtttccaatacaaatttattttctttgtcaGCTATTT
CGTATTGacttaaatttgtttttttaggtcaaaatattgtaaacaaaaaa
ttctctgcaaaattaaattccagcAAAACTTctgaattttgagctgtgaa
ctgCAAAAATATCTGCCCTTGAGGTACACCATTTTTTGTTTCTGTACTAA
TTCTATAACAATTGTGTCTCTCATAGACTCTGCATCTGGTCTGAAGGTGC
ATTCAAAAAACTCGACTCCATCTATGGAACATGGAGAAAACCATCAACAC
AAAAAACGAACTTCAAGTAAGTATAATTTGGTCTGAAATCATTTCCTCTG
ATGAAAAATTGTATCATACTTCCAGCCATGGTGAACATTATGACTACAAT
TCTCTGATGGAATACTCTCTGAAGTTTGGATCTATGTAGTGCCTGTCATG
tccacttttgttttttgacACTAGCGTCTTTGGTAAAAAGATACcttaca
tttcaaatttttcctaTGTTCCAATGATGAGAAACCTTAACTTACTTCCA
ATCGTGGTGATTAATAGACTACAATTCTCTGAGGAACAAGACAAAAATTA
TGCAGCTCGTTTTGGGCACTGCCTCCTGAACTGCACCAAGATAAGATTGT
GTAGAATGTTTCTCAACAGCTCTctaaataattttataatttttagtcTT
CCACGACACAAGATGGCTATGCCAGATCTCGCTCGAATCATCAACTCCGA
CGAAATCCAAAGTGTTGTTCGGCCAGTCAAACCACGTGCTCGACGTGCTA
CCATCAAGAAGAACCCACTCAAGAACTCCGCCATCATGTCCCGCCTCAAC
CCACACGCCCGTGTCACCAAACGTGCCGCTATCGTCGCTCAAGAACGTCG
TGCGGCCGCGAAGGACAAGGCTTTAGATGCGAAGCGTGGAATTGCAAAGA
AGTGAATTTGAATGTACTATCTTGGCAAATGTTAATGTTTGTTCAGGGAA
ATAAATTATTGAAGAGAACTTGTTTCCATGAATTAAttttttgctttgat
taagttaggcttttttcaattttgcaccaccagaaagttttgacaatttt
ttttgttttgtcaatCCTTGGGGCCGTTCACATAGTACGTACCCactaag
ggggagggggtcttctcaaaagcgtatgtttgcgtacagggggaggggag
gggttaAAGGAAAacgtacgtacgcagagaattttttcatagcccttttt
cgcTTGTTTTCTGTGGACTTTTACGCTTGTTTTACGTTatttgcgtacag
ggggaggtgGTACTCAATTTTCGACA

Coding sequence (CDS) from alignment at sc0000210_pilon:522130..526255+

>MSTRG.18963.1.p1 ID=MSTRG.18963.1.p1|Name=MSTRG.18963.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5430bp|location=Sequence derived from alignment at sc0000210_pilon:522130..526255+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGgcgGCCCGCCCACTTGTTTCTGTTTTCAATGAGCAAGGAGATGTCTC
CAGCCAAGTAACACTCCCAGCTGTCTTCAAGGCACCAATCCGATCAGACA
TTGTCAATTTTGTCCATACCAACATGGCCAAAAATTCCAGACAACCCTAT
GCTGTCCACAAACATGCTGGTCACCAAACCTCAGCAGAATCATGGGGTAC
TGGTCGTGCTGTTGCCCGTATTCCAAGAGTACGTGGTGGTGGTACCCACA
GATCTGGTCAGGGTGCCTTCGGTAACATGTGCCGTGGAGGACGAATGTTT
GCTCCAACCAAAACATGGAGAAGATGGCATCGTCCTATCAACCAAAACCA
ACGAAGATATGCTGTCTGCTCAGCAGTTGCTGCTAGTGCTCTTCCACCCC
TTGTCATGGCCCGTGGACACAAAATTGATGGAATTCCAGAAGTTCCAGTT
GTTTGCTCTAATGCTATCGAAAgcttcacaaaaacaaaatcagctGTTGC
TTTACTAAAGAAAATTAACGCATACGATGATGTACAAAAATGTCAAGACT
CAAAGAAAGTTCGCGCTGGAAAAGGTAAAATGAGAAACCGACGTTACACA
ATGCGCAGAGGACCTCTTGTTGTTTATAATGAAGATCACGGCATCCAACA
AGCTTTCCGAAATTTACCTGGCGTTGAAACAATTTCTGTTGATCGACTAA
ACCTTCTCAAACTGTGTCCTGGAGGACATCTCGGCCGACTCTGCATCTGG
TCTGAAGGTGCATTCAAAAAACTCGACTCCATCTATGGAACATGGAGAAA
ACCATCAACACAAAAAACGAACTTCAAtcTTCCACGACACAAGATGGCTA
TGCCAGATCTCGCTCGAATCATCAACTCCGACGAAATCCAAAGTGTTGTT
CGGCCAGTCAAACCACGTGCTCGACGTGCTACCATCAAGAAGAACCCACT
CAAGAACTCCGCCATCATGTCCCGCCTCAACCCACACGCCCGTGTCACCA
AACGTGCCGCTATCGTCGCTCAAGAACGTCGTGCGGCCGCGAAGGACAAG
GCTTTAGATGCGAAGCGTGGAATTGCAAAGAAGTGAATGgcgGCCCGCCC
ACTTGTTTCTGTTTTCAATGAGCAAGGAGATGTCTCCAGCCAAGTAACAC
TCCCAGCTGTCTTCAAGGCACCAATCCGATCAGACATTGTCAATTTTGTC
CATACCAACATGGCCAAAAATTCCAGACAACCCTATGCTGTCCACAAACA
TGCTGGTCACCAAACCTCAGCAGAATCATGGGGTACTGGTCGTGCTGTTG
CCCGTATTCCAAGAGTACGTGGTGGTGGTACCCACAGATCTGGTCAGGGT
GCCTTCGGTAACATGTGCCGTGGAGGACGAATGTTTGCTCCAACCAAAAC
ATGGAGAAGATGGCATCGTCCTATCAACCAAAACCAACGAAGATATGCTG
TCTGCTCAGCAGTTGCTGCTAGTGCTCTTCCACCCCTTGTCATGGCCCGT
GGACACAAAATTGATGGAATTCCAGAAGTTCCAGTTGTTTGCTCTAATGC
TATCGAAAgcttcacaaaaacaaaatcagctGTTGCTTTACTAAAGAAAA
TTAACGCATACGATGATGTACAAAAATGTCAAGACTCAAAGAAAGTTCGC
GCTGGAAAAGGTAAAATGAGAAACCGACGTTACACAATGCGCAGAGGACC
TCTTGTTGTTTATAATGAAGATCACGGCATCCAACAAGCTTTCCGAAATT
TACCTGGCGTTGAAACAATTTCTGTTGATCGACTAAACCTTCTCAAACTG
TGTCCTGGAGGACATCTCGGCCGACTCTGCATCTGGTCTGAAGGTGCATT
CAAAAAACTCGACTCCATCTATGGAACATGGAGAAAACCATCAACACAAA
AAACGAACTTCAAtcTTCCACGACACAAGATGGCTATGCCAGATCTCGCT
CGAATCATCAACTCCGACGAAATCCAAAGTGTTGTTCGGCCAGTCAAACC
ACGTGCTCGACGTGCTACCATCAAGAAGAACCCACTCAAGAACTCCGCCA
TCATGTCCCGCCTCAACCCACACGCCCGTGTCACCAAACGTGCCGCTATC
GTCGCTCAAGAACGTCGTGCGGCCGCGAAGGACAAGGCTTTAGATGCGAA
GCGTGGAATTGCAAAGAAGTGAATGgcgGCCCGCCCACTTGTTTCTGTTT
TCAATGAGCAAGGAGATGTCTCCAGCCAAGTAACACTCCCAGCTGTCTTC
AAGGCACCAATCCGATCAGACATTGTCAATTTTGTCCATACCAACATGGC
CAAAAATTCCAGACAACCCTATGCTGTCCACAAACATGCTGGTCACCAAA
CCTCAGCAGAATCATGGGGTACTGGTCGTGCTGTTGCCCGTATTCCAAGA
GTACGTGGTGGTGGTACCCACAGATCTGGTCAGGGTGCCTTCGGTAACAT
GTGCCGTGGAGGACGAATGTTTGCTCCAACCAAAACATGGAGAAGATGGC
ATCGTCCTATCAACCAAAACCAACGAAGATATGCTGTCTGCTCAGCAGTT
GCTGCTAGTGCTCTTCCACCCCTTGTCATGGCCCGTGGACACAAAATTGA
TGGAATTCCAGAAGTTCCAGTTGTTTGCTCTAATGCTATCGAAAgcttca
caaaaacaaaatcagctGTTGCTTTACTAAAGAAAATTAACGCATACGAT
GATGTACAAAAATGTCAAGACTCAAAGAAAGTTCGCGCTGGAAAAGGTAA
AATGAGAAACCGACGTTACACAATGCGCAGAGGACCTCTTGTTGTTTATA
ATGAAGATCACGGCATCCAACAAGCTTTCCGAAATTTACCTGGCGTTGAA
ACAATTTCTGTTGATCGACTAAACCTTCTCAAACTGTGTCCTGGAGGACA
TCTCGGCCGACTCTGCATCTGGTCTGAAGGTGCATTCAAAAAACTCGACT
CCATCTATGGAACATGGAGAAAACCATCAACACAAAAAACGAACTTCAAt
cTTCCACGACACAAGATGGCTATGCCAGATCTCGCTCGAATCATCAACTC
CGACGAAATCCAAAGTGTTGTTCGGCCAGTCAAACCACGTGCTCGACGTG
CTACCATCAAGAAGAACCCACTCAAGAACTCCGCCATCATGTCCCGCCTC
AACCCACACGCCCGTGTCACCAAACGTGCCGCTATCGTCGCTCAAGAACG
TCGTGCGGCCGCGAAGGACAAGGCTTTAGATGCGAAGCGTGGAATTGCAA
AGAAGTGAATGgcgGCCCGCCCACTTGTTTCTGTTTTCAATGAGCAAGGA
GATGTCTCCAGCCAAGTAACACTCCCAGCTGTCTTCAAGGCACCAATCCG
ATCAGACATTGTCAATTTTGTCCATACCAACATGGCCAAAAATTCCAGAC
AACCCTATGCTGTCCACAAACATGCTGGTCACCAAACCTCAGCAGAATCA
TGGGGTACTGGTCGTGCTGTTGCCCGTATTCCAAGAGTACGTGGTGGTGG
TACCCACAGATCTGGTCAGGGTGCCTTCGGTAACATGTGCCGTGGAGGAC
GAATGTTTGCTCCAACCAAAACATGGAGAAGATGGCATCGTCCTATCAAC
CAAAACCAACGAAGATATGCTGTCTGCTCAGCAGTTGCTGCTAGTGCTCT
TCCACCCCTTGTCATGGCCCGTGGACACAAAATTGATGGAATTCCAGAAG
TTCCAGTTGTTTGCTCTAATGCTATCGAAAgcttcacaaaaacaaaatca
gctGTTGCTTTACTAAAGAAAATTAACGCATACGATGATGTACAAAAATG
TCAAGACTCAAAGAAAGTTCGCGCTGGAAAAGGTAAAATGAGAAACCGAC
GTTACACAATGCGCAGAGGACCTCTTGTTGTTTATAATGAAGATCACGGC
ATCCAACAAGCTTTCCGAAATTTACCTGGCGTTGAAACAATTTCTGTTGA
TCGACTAAACCTTCTCAAACTGTGTCCTGGAGGACATCTCGGCCGACTCT
GCATCTGGTCTGAAGGTGCATTCAAAAAACTCGACTCCATCTATGGAACA
TGGAGAAAACCATCAACACAAAAAACGAACTTCAAtcTTCCACGACACAA
GATGGCTATGCCAGATCTCGCTCGAATCATCAACTCCGACGAAATCCAAA
GTGTTGTTCGGCCAGTCAAACCACGTGCTCGACGTGCTACCATCAAGAAG
AACCCACTCAAGAACTCCGCCATCATGTCCCGCCTCAACCCACACGCCCG
TGTCACCAAACGTGCCGCTATCGTCGCTCAAGAACGTCGTGCGGCCGCGA
AGGACAAGGCTTTAGATGCGAAGCGTGGAATTGCAAAGAAGTGAATGgcg
GCCCGCCCACTTGTTTCTGTTTTCAATGAGCAAGGAGATGTCTCCAGCCA
AGTAACACTCCCAGCTGTCTTCAAGGCACCAATCCGATCAGACATTGTCA
ATTTTGTCCATACCAACATGGCCAAAAATTCCAGACAACCCTATGCTGTC
CACAAACATGCTGGTCACCAAACCTCAGCAGAATCATGGGGTACTGGTCG
TGCTGTTGCCCGTATTCCAAGAGTACGTGGTGGTGGTACCCACAGATCTG
GTCAGGGTGCCTTCGGTAACATGTGCCGTGGAGGACGAATGTTTGCTCCA
ACCAAAACATGGAGAAGATGGCATCGTCCTATCAACCAAAACCAACGAAG
ATATGCTGTCTGCTCAGCAGTTGCTGCTAGTGCTCTTCCACCCCTTGTCA
TGGCCCGTGGACACAAAATTGATGGAATTCCAGAAGTTCCAGTTGTTTGC
TCTAATGCTATCGAAAgcttcacaaaaacaaaatcagctGTTGCTTTACT
AAAGAAAATTAACGCATACGATGATGTACAAAAATGTCAAGACTCAAAGA
AAGTTCGCGCTGGAAAAGGTAAAATGAGAAACCGACGTTACACAATGCGC
AGAGGACCTCTTGTTGTTTATAATGAAGATCACGGCATCCAACAAGCTTT
CCGAAATTTACCTGGCGTTGAAACAATTTCTGTTGATCGACTAAACCTTC
TCAAACTGTGTCCTGGAGGACATCTCGGCCGACTCTGCATCTGGTCTGAA
GGTGCATTCAAAAAACTCGACTCCATCTATGGAACATGGAGAAAACCATC
AACACAAAAAACGAACTTCAAtcTTCCACGACACAAGATGGCTATGCCAG
ATCTCGCTCGAATCATCAACTCCGACGAAATCCAAAGTGTTGTTCGGCCA
GTCAAACCACGTGCTCGACGTGCTACCATCAAGAAGAACCCACTCAAGAA
CTCCGCCATCATGTCCCGCCTCAACCCACACGCCCGTGTCACCAAACGTG
CCGCTATCGTCGCTCAAGAACGTCGTGCGGCCGCGAAGGACAAGGCTTTA
GATGCGAAGCGTGGAATTGCAAAGAAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.18963MSTRG.18963Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18963.1.p1MSTRG.18963.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18963.1.p1.exon1MSTRG.18963.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18963.1.p1.exon2MSTRG.18963.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18963.1.p1.exon3MSTRG.18963.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18963.1.p1.exon4MSTRG.18963.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18963.1.p1.exon5MSTRG.18963.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210_pilongenomesc0000210_pilon:522130..526255 +