MSTRG.18959.2.p1 (mRNA) -

Overview
NameMSTRG.18959.2.p1
Unique NameMSTRG.18959.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000210_pilon:491022..492669+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.18959.2.p1 ID=MSTRG.18959.2.p1|Name=MSTRG.18959.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1648bp|location=Sequence derived from alignment at sc0000210_pilon:491022..492669+ (Clytia hemisphaerica_ch_hm2_pilon)
GTGATGAGAGTCCAAAGATACGAACTCCCGGgaggtaaaaaaacaaaaaa
attacaagttCAAAATCACTCGCTCGTCAAACCTTACCTCCCGAAAGTTC
TAAACTATTCGATAACTCGATTGCCTCAAACTACTTTCGATAACTCAAAC
GGATTGTTTCAAAACCCTGAGAGAAATCAACGCTAACTTGTCTTTCTATT
ACATAAACTTTCCAAATTCGAGCACGATCACTCTTTCTTGCTGTTAAAGT
TAAGGGAACTCAAACCGCGTATATTTAAGTTGCAAGTTGGCTTGAGcaac
aatagcgagtttatgtatgtgtgtttttcagcgacggagacggtaaggtt
tttaccgtcctcgattttgcggggcggaattgcgggtttttccaaaccgc
ttcagtcactctaccgtcctcaaaagtgcaaatacataaactcgctaatg
attATAAGGAggaggataatcacgacgacggacgaaaaatgtaataggct
tgtgaaaatagaaaatttgattggttgaaactctcTAGcctgttaatttt
ttgttcgtcgtcgtgattttaccgatttacatAACTTCACTATTACGCAA
AGATTTAGAAACCTCTTTCTCATTTCGCAGCGTCAGATTGGATGGTTTAA
ACTTACACTTGGTGGCCAgcagaaaagattacgtcatcgACTTCATCGAA
AACATGCGCTTCTTAATGACCAAAAGAAACGCCACAAAACAATACGTCCT
AACCGTGTCGCCCGATTGTTACACCCTCGACATCAGGGCGGCTTTTATTT
ACGACGCCATCACCATCGCAACTAATAGCTTTGACGCGTTTTTTGTTGAT
TTCGCACACCAGAATTGCTATCTGTCTTCAAAGGACTTTGTGAGCTATTT
CAACAAATGGACCTCCCTGCTAAGAGGTAAACAACCAGATTTGTACTTGA
CGCTCTCAGGTAGCGACCAAGGATCACAAAGGAATTTCATTCAACCTCAA
GACGTGCAAGAAGCCTTAAGAAAGGTTAGAGAGTTTATAATTTCATtgat
atgacattttttgtatgCTGACGTTGAGGAAGTTTAGTCAGGCTTATTAG
CCTTAAAGCGCAATCTCTGTGATTTATGGAAGGATTGGATCAATTCCTAC
AACTATGTTGAACTacattgaaaattgattatCTTAGAATCTCTAAGAGG
CTTTACATCTAGAACACCATTGCTCAGATCATGGCTTATAAGTAGGTTCT
AGGTGGCCCCTAagaatttaggtgacccctaggAGCTATGCACATCTCCA
ATTATTCAAGTATTCAAACGGTATCTAACTATGTGTGTTTTTCCAATAGA
ATGATGTCATCTCACAGATCAAGGGAATCACCTTAAATGACGTCGGTGAT
GATTCCCTGAACCTTGTTCGTGCAAACAAAAGATACAGCTACTACATTCG
AATGTTGTTGGATGACCCTAAATTTGACGTTCTTTCCATTACTACGACCA
CcacaacgacaacgaccacccGGGCGCCCAAAAAATCTAATGGCGGAGGT
AGAAGTAGTGGCGGGGGTGGTCTTCGCGTCATCAACAGAAATTCGAATTT
CTATTATCCAGGGAAAGGTAGGGGCGTGAATTCTTGGACTGATCATTT

Coding sequence (CDS) from alignment at sc0000210_pilon:491022..492669+

>MSTRG.18959.2.p1 ID=MSTRG.18959.2.p1|Name=MSTRG.18959.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2169bp|location=Sequence derived from alignment at sc0000210_pilon:491022..492669+ (Clytia hemisphaerica_ch_hm2_pilon)
GATGAGAGTCCAAAGATACGAACTCCCGGgagCGTCAGATTGGATGGTTT
AAACTTACACTTGGTGGCCAgcagaaaagattacgtcatcgACTTCATCG
AAAACATGCGCTTCTTAATGACCAAAAGAAACGCCACAAAACAATACGTC
CTAACCGTGTCGCCCGATTGTTACACCCTCGACATCAGGGCGGCTTTTAT
TTACGACGCCATCACCATCGCAACTAATAGCTTTGACGCGTTTTTTGTTG
ATTTCGCACACCAGAATTGCTATCTGTCTTCAAAGGACTTTGTGAGCTAT
TTCAACAAATGGACCTCCCTGCTAAGAGGTAAACAACCAGATTTGTACTT
GACGCTCTCAGGTAGCGACCAAGGATCACAAAGGAATTTCATTCAACCTC
AAGACGTGCAAGAAGCCTTAAGAAAGAATGATGTCATCTCACAGATCAAG
GGAATCACCTTAAATGACGTCGGTGATGATTCCCTGAACCTTGTTCGTGC
AAACAAAAGATACAGCTACTACATTCGAATGTTGTTGGATGACCCTAAAT
TTGACGTTCTTTCCATTACTACGACCACcacaacgacaacgaccacccGG
GCGCCCAAAAAATCTAATGGCGGAGGTAGAAGTAGTGGCGGGGGTGGTCT
TCGCGTCATCAACAGAAATTCGAATTTCTATTATCCAGGGAAAGGTAGGG
GCGTGAATTCTTGGACTGATCATGATGAGAGTCCAAAGATACGAACTCCC
GGgagCGTCAGATTGGATGGTTTAAACTTACACTTGGTGGCCAgcagaaa
agattacgtcatcgACTTCATCGAAAACATGCGCTTCTTAATGACCAAAA
GAAACGCCACAAAACAATACGTCCTAACCGTGTCGCCCGATTGTTACACC
CTCGACATCAGGGCGGCTTTTATTTACGACGCCATCACCATCGCAACTAA
TAGCTTTGACGCGTTTTTTGTTGATTTCGCACACCAGAATTGCTATCTGT
CTTCAAAGGACTTTGTGAGCTATTTCAACAAATGGACCTCCCTGCTAAGA
GGTAAACAACCAGATTTGTACTTGACGCTCTCAGGTAGCGACCAAGGATC
ACAAAGGAATTTCATTCAACCTCAAGACGTGCAAGAAGCCTTAAGAAAGA
ATGATGTCATCTCACAGATCAAGGGAATCACCTTAAATGACGTCGGTGAT
GATTCCCTGAACCTTGTTCGTGCAAACAAAAGATACAGCTACTACATTCG
AATGTTGTTGGATGACCCTAAATTTGACGTTCTTTCCATTACTACGACCA
CcacaacgacaacgaccacccGGGCGCCCAAAAAATCTAATGGCGGAGGT
AGAAGTAGTGGCGGGGGTGGTCTTCGCGTCATCAACAGAAATTCGAATTT
CTATTATCCAGGGAAAGGTAGGGGCGTGAATTCTTGGACTGATCATGATG
AGAGTCCAAAGATACGAACTCCCGGgagCGTCAGATTGGATGGTTTAAAC
TTACACTTGGTGGCCAgcagaaaagattacgtcatcgACTTCATCGAAAA
CATGCGCTTCTTAATGACCAAAAGAAACGCCACAAAACAATACGTCCTAA
CCGTGTCGCCCGATTGTTACACCCTCGACATCAGGGCGGCTTTTATTTAC
GACGCCATCACCATCGCAACTAATAGCTTTGACGCGTTTTTTGTTGATTT
CGCACACCAGAATTGCTATCTGTCTTCAAAGGACTTTGTGAGCTATTTCA
ACAAATGGACCTCCCTGCTAAGAGGTAAACAACCAGATTTGTACTTGACG
CTCTCAGGTAGCGACCAAGGATCACAAAGGAATTTCATTCAACCTCAAGA
CGTGCAAGAAGCCTTAAGAAAGAATGATGTCATCTCACAGATCAAGGGAA
TCACCTTAAATGACGTCGGTGATGATTCCCTGAACCTTGTTCGTGCAAAC
AAAAGATACAGCTACTACATTCGAATGTTGTTGGATGACCCTAAATTTGA
CGTTCTTTCCATTACTACGACCACcacaacgacaacgaccacccGGGCGC
CCAAAAAATCTAATGGCGGAGGTAGAAGTAGTGGCGGGGGTGGTCTTCGC
GTCATCAACAGAAATTCGAATTTCTATTATCCAGGGAAAGGTAGGGGCGT
GAATTCTTGGACTGATCAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.18959MSTRG.18959Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18959.2.p1.exon1MSTRG.18959.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18959.2.p1.exon2MSTRG.18959.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18959.2.p1.exon3MSTRG.18959.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18959.2.p1MSTRG.18959.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210_pilongenomesc0000210_pilon:491022..492669 +