MSTRG.18943.1.p1 (mRNA) -

Overview
NameMSTRG.18943.1.p1
Unique NameMSTRG.18943.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000210_pilon:304782..309815-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.18943.1.p1 ID=MSTRG.18943.1.p1|Name=MSTRG.18943.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5034bp|location=Sequence derived from alignment at sc0000210_pilon:304782..309815- (Clytia hemisphaerica_ch_hm2_pilon)
AAGAAAGAAGTTGAACTATTATCTCTTTGCCTACTGCATTTAAGTATAGA
GGCCTATAGAGTTTAAAGAAAGAAGTTGAACTATTATCTCTTCTTATACA
TACTTTTTGTGTCGATAGACTGTGTGAAAATCAAGGAAATGTATCTTCTA
CTGAACTTCACGAACACAACAAACTCTTCAGCTTTGGATAGCGATGACGC
TGATACACTGAACGGTGGTGTAATATATCTTTATGTAAGTTACAGTAGAC
TACACGTTTTTTATAAGAACATCCAGAATTTTTGAAGGATGTTCTCTACT
TTTTGAGTTCTAAGCATGAAAATGTTCTTAACATGTTCTTAAACCATTTT
GTTAATATTTTCGACCATTTTCCAAAGAAATAGGGTGTTTTTGAATCCAC
AAAGCCTTAAAATGTTCTTGACTTATTCTTAACATTTTGGCCAACGAAGC
CTGTATGTTCTGATATAGTTTGTTCTTATAAAAAAACGTATATGCTGATA
AAAATGAACTGGACAGATAACNTCATTTGGGCAGCCTGGAGCCCTTGACT
TTTCAAATTTGGCACATTACTTCCTTGGGTGCATATACCTCTTTTCAAAG
GTTTTGATCTATTTTATATACCTTTTTTCTTTTTTTTTCTTTTTTTTGCT
TGTGCTTTGTTGAAAAAAAATTTTTGCAAAAGTTTTTACCGGCAGGTTGA
ACAGCTTGTATTTAAATTTTGAAAATGGAAATGATATATATATATATATA
TTTGATGTTTTTATTTTTGGTTTGACGCTTGGAAGGGGTAACTTTTCCCT
ACAATGCCTGTCTAATCTGTTTGGGTGCTGCTGACCGAATCACAAGGTTA
TTATTTTACCGTGGCTGATCTGGTATTTTGAAGTTTTTAGTTATTTTGCT
TTTGGCATAAACAAACATGGTAACTACCCATGTGATTTTATGTATGTGGT
GAGTGTACACTTGTACTTGTACTTCAACACCCAAGTTGATGTTTGGCTTT
AAAAACATTATCTCGATTACAGTACTGTATATTATACTGTTTATATATAT
TTACACTCTAATCTTATCCATACCACGCGATTAACATTGACGACTCTTGT
ATTTCACAGACCAGATTATGAAAAATGTGATAAAAAACGCGGCCGCCTGT
TATAAAGAGTGGGCGCCAGTTATAAAGGGCGGCCGCCTTTTTCGAAGGAA
AAGGGTGACCGCTTATTATAAAAGGCGGCCGCCAGTATTATAGGCAGCCG
CTCTTTGTAAAAGGCGGCCGCGGATTATAACTGGCGGCCGTCTCTTAAAA
AGGCGGCCGCCAAAAGCAAAATAACTAAAAACTTCGAAATACCAGATCAG
CCACGGCAAATCTTAGTAAAAAAAATTAAATTTAGAAAAGTTATCAATTT
AGAGAAAAAAATTTAATATTAGAAAAAAAAAATTAATACATTTCTTGAAG
AGTTATTTAGTTAAGAACATTGAGTAGTTATGCTTAAAAAAAGGGTAATA
AAAAGATTTTGTTATGTAGATTAATTTTTGTTACCGAAATCTAACTCAAC
CGTTACCTATGATATGATACTCTACTTTTTTATGCAAAAAATCAAAAAAC
ATTTTACCTACTGTACTATATTCAATATTGAGCAAATCCTGAAAAACCGC
ATTTTTTTGGGTCGTTTTTGGCCCAAATTTGCCCAAAATAATTTTTTTTT
CTTTCAACAAATTTGGTTCCTTGTCAACCATCTATGTGCAAAAAATCATC
TGATGGTCTTGCTTCACAAAGTCACAAATCCAGGAAGCATGGAAACGAAA
GTTGCAAGTGTGCACGGGAGGATGGAATCGGGCCAAAAAGTTTTGCTCTT
TTAGAATTTTTTTTTCAGACGGTGGACTTCGTGTATGCACGCACGGAATC
GGGCAAAAAAAATTCTCTTTTTTCTCTAAAGTTAAATGTTTTTCTCTAAA
TTTAATTTTTTCTACTAAAAAAATTAAATAAAATGAAAAAATAAAATGAA
ATGTTTTTTTGTCGATGGCACTTCTCGATATCCACAATAAAGATGGTATC
CTGTAAAAAAGATAGTATCGTTTCAATTAAGATAATGTTTTTTGGGAAAA
TAGTGTCGCGAAATGAAAGATAGTGTCGCGAAATGAAAGATGGTGTCGCG
AAATGAAAGATAGTGTCGCAAAATGAAAGGTAGTTTCGCGAAATGAAAGA
TAGTGTCGCGAAATGAAAGATAGTGTTACGAAATGAAAGATAGTGTCGCG
AAATGAAAGATAGTATTTATTTCCGCTTTGGCGCGCCATAGATAACCCCG
TTAGCAAAATATAGATAGCAGTATCGAAGAAATTTGATTTTTAACATCTC
GGCACGTAAAACCTAGTCAATACTTTAGTTTAAGTTTGAAAATCTGCCAG
AAGTCAAGAATCCCTAAATTATGCAATAGAGTCTCGTTAACTCGAACCTC
TTTAACTCGAACCTCTATAATTCGAATATAGTCTCCTTAACTCGAGCAAG
TTTGCTGGTCCCTTATTCAGTTACACATTTTTTTTTATTAGAACACCTAA
AATTTGGCTGAGCCTGGATGTGCTTATTTTTTTTAGCAATTCTCAGCCTA
AAACTAAAATGTTCTTAAATGCGTTCCTAATTTTTCAAACTACTCTAAAT
TGATAATATCATGCAATCAATATAAAGAGCACTTAAAATTGGTAAAATTT
GGACAATATTTTGACTCCCGATTCTAGAAAATCCATCCCTAAGTTCGGTT
AAAACTGCTTGAAAAGAGGAAAAAATTGTAGTTTCTTCAGGTTTCTTGTC
ATTTTTTTCCAATCTGAGGCTGGGCATGTTCTTACGATGTTCTTAATTTT
TCGACGATTTTCAGCCTGAATGTTCTTATAAACTGGGTTCTAAAATCAAA
AAAAAAAATGTGTAACAATGTCTTACTCGATATCTCGAATAGATGTCCGT
TACCTGTGCGTGTCTGAGTTATGGAGACACCACTGTATTCTTTAAGTCAG
AACGCTTTTCTTACCATACCTAATATTTTCCCCTCCTTAGAATGTGCTTG
CTCAATGTGGTTGCATTTTCTCCGTCTTGATGTTCCTATCCATATTACTG
GAACTGAAGTTGTTCAAAGTCAATATCTGGCAGGCCTTGGCGATCGAAAA
AGTGAGCTGCTTTATTGTCTATTACAATATTTTGCTTATAATAATGTTAA
TACTCATGGTGATCATTTTGTTACCGATTTTTCATTTTGCTGCTAAATTG
GATGTTTATTCATATAAAATCTCATTGGTAATAAATTGTTCGATGTATCT
AATTGCATTGGTTTTACTTCTTACATTGAACTATTTCTGTAATTTGGTTT
GTCGAAAACGCGCAAAACAAAGTAAGCTGACTTTGAATGAAAAGCTTGAA
ATTGTAGACGAACATATTCCAGATATGACTGGATTGGAGCAAAATAAAGA
AGAATCAGAATCGAAGCTGATTCCATTACTGATTCCATTGTTGAAAGAAG
TCTCGGAAGTGTTTCATAAAGAATCAACAGTTTTAGTTCCCATATTGACT
GGAAGCGTTGCTGAGAGGTTTTCAGTACCTTTATCTAGCGTGGATGGAAA
GTATTGGGGAATGACCAGGTTTAATGCGCATGATCGACACGCAATATTGA
GTGATCATGACTTTTTGATCGAATATGCATCAGTGAGAGCAAGCTTCAAT
CATGGTTGCGATATCCGTATTGAAACTCAATCAGTAAACTTAAATCCAGG
ATTTGTAAAACTTCATGACTCATCTGGTTCAGTCATCTCAGCTAAGGAAG
TAAAAACAAGAATCCAAGAGGCTGTAATGAAAATTGATATCCGCGTAATT
GACGGCTTTGATTCTTTCGAATCTCGCCCTTATGGTGCTTTTCCGAATAC
ATTTATAGTAGGAGGCTACAGCAGTATATCTCAAAAGGGACCTGCAATAT
GCCTCAATTATCACATTCTGGAAAAACAGTTCTTTTATGCTGATTTAACT
TTCGGAATACCTTGCCCAGGTGAGTGGCCATTTTCCTCAAATTGGCCGGT
GAGGACTCGAAAGTGGCCTCCAAGCGCCGACGTTCATCGTATTGTTGATA
TGGGGTTTCATTTTGTACCAAAATCTCAGGTGACTGATATGGAAGGAGTT
ACATGGAGATACTCTTTTTCATTAGCCGAAGTTGAGTTATCGAGATTGAT
ATCGCCCGTAGCACGGAAATGTTTTATTGCATTGAAAATTATTGGGAAAG
ATTTTCTAAAGCAGTGTTGTAAAAACTTTAAATCTTATCACATGAAGACA
ATTTTCATGTACACTTTGGAGAATACAGATCCAGCCCGATGGAACGATAA
CCATATTGAAACACTTTTTGATATGTGTTTGAATGATGTTATTAATGCAG
TTAAAATAAAGAACTGTCCCCATTTCTGGATCCAGGATGTCAATCTTTTT
GACAATTTAACGAACGAGGATTTCAGTAAGCTTGAAAATATCCTGATGAA
AATAAAAAACGTCCAGAAGATTATATCACGTGTCTGAAAAAGAAAGTCAA
ATGGGGGCTGAAAGATGATGGTGAATCTGGTGAAGTTTGAAGAATTATTC
GTATAATCATCAGTAAATAATCATTAGTAAATCATAGTTTTTTTAGAAAA
AGAGAAAATTTTATAAGGGGACAAAAGTGTCCCCCCGCCGAAGAGTGCAA
AAAGTGGTAATAGTGCAATTAACGATTAATCGCACTCCTCTAAACCAATC
AGATTCGAGTAATTTTGCACGGCTGACGATTATTCGTATAATCATTATTC
ATTGTATCGAGTAAAGAAGAATTAACTTACAATTGCTACAAGGGGTTTAA
TGCTGGACAAATCAACAGGAAATGCAGTGTATTATTGTAGATTTTATGAG
AGATATTTTCAGTCATACACAGCATTGTCTGAGGATTGTGACAGCGTGTT
GCAATTGTAAGTTAATTCTTGATATTTCGCTCAAATTTTTCGAATTTTCT
TGAGCACTTTATGATCCTATTCATTTCATTGACG

Coding sequence (CDS) from alignment at sc0000210_pilon:304782..309815-

>MSTRG.18943.1.p1 ID=MSTRG.18943.1.p1|Name=MSTRG.18943.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3186bp|location=Sequence derived from alignment at sc0000210_pilon:304782..309815- (Clytia hemisphaerica_ch_hm2_pilon)
AATGTGCTTGCTCAATGTGGTTGCATTTTCTCCGTCTTGATGTTCCTATC
CATATTACTGGAACTGAAGTTGTTCAAAGTCAATATCTGGCAGGCCTTGG
CGATCGAAAAAGTGAGCTGCTTTATTGTCTATTACAATATTTTGCTTATA
ATAATGTTAATACTCATGGTGATCATTTTGTTACCGATTTTTCATTTTGC
TGCTAAATTGGATGTTTATTCATATAAAATCTCATTGGTAATAAATTGTT
CGATGTATCTAATTGCATTGGTTTTACTTCTTACATTGAACTATTTCTGT
AATTTGGTTTGTCGAAAACGCGCAAAACAAAGTAAGCTGACTTTGAATGA
AAAGCTTGAAATTGTAGACGAACATATTCCAGATATGACTGGATTGGAGC
AAAATAAAGAAGAATCAGAATCGAAGCTGATTCCATTACTGATTCCATTG
TTGAAAGAAGTCTCGGAAGTGTTTCATAAAGAATCAACAGTTTTAGTTCC
CATATTGACTGGAAGCGTTGCTGAGAGGTTTTCAGTACCTTTATCTAGCG
TGGATGGAAAGTATTGGGGAATGACCAGGTTTAATGCGCATGATCGACAC
GCAATATTGAGTGATCATGACTTTTTGATCGAATATGCATCAGTGAGAGC
AAGCTTCAATCATGGTTGCGATATCCGTATTGAAACTCAATCAGTAAACT
TAAATCCAGGATTTGTAAAACTTCATGACTCATCTGGTTCAGTCATCTCA
GCTAAGGAAGTAAAAACAAGAATCCAAGAGGCTGTAATGAAAATTGATAT
CCGCGTAATTGACGGCTTTGATTCTTTCGAATCTCGCCCTTATGGTGCTT
TTCCGAATACATTTATAGTAGGAGGCTACAGCAGTATATCTCAAAAGGGA
CCTGCAATATGCCTCAATTATCACATTCTGGAAAAACAGTTCTTTTATGC
TGATTTAACTTTCGGAATACCTTGCCCAGGTGAGTGGCCATTTTCCTCAA
ATTGGCCGGTGAGGACTCGAAAGTGGCCTCCAAGCGCCGACGTTCATCGT
ATTGTTGATATGGGGTTTCATTTTGTACCAAAATCTCAGGTGACTGATAT
GGAAGGAGTTACATGGAGATACTCTTTTTCATTAGCCGAAGTTGAGTTAT
CGAGATTGATATCGCCCGTAGCACGGAAATGTTTTATTGCATTGAAAATT
ATTGGGAAAGATTTTCTAAAGCAGTGTTGTAAAAACTTTAAATCTTATCA
CATGAAGACAATTTTCATGTACACTTTGGAGAATACAGATCCAGCCCGAT
GGAACGATAACCATATTGAAACACTTTTTGATATGTGTTTGAATGATGTT
ATTAATGCAGTTAAAATAAAGAACTGTCCCCATTTCTGGATCCAGGATGT
CAATCTTTTTGACAATTTAACGAACGAGGATTTCAGTAAGCTTGAAAATA
TCCTGATGAAAATAAAAAACGTCCAGAAGATTATATCACGTGTCTGAATG
TATCTTCTACTGAACTTCACGAACACAACAAACTCTTCAGCTTTGGATAG
CGATGACGCTGATACACTGAACGGTGGTGTAATATATCTTTATAATGTGC
TTGCTCAATGTGGTTGCATTTTCTCCGTCTTGATGTTCCTATCCATATTA
CTGGAACTGAAGTTGTTCAAAGTCAATATCTGGCAGGCCTTGGCGATCGA
AAAAGTGAGCTGCTTTATTGTCTATTACAATATTTTGCTTATAATAATGT
TAATACTCATGGTGATCATTTTGTTACCGATTTTTCATTTTGCTGCTAAA
TTGGATGTTTATTCATATAAAATCTCATTGGTAATAAATTGTTCGATGTA
TCTAATTGCATTGGTTTTACTTCTTACATTGAACTATTTCTGTAATTTGG
TTTGTCGAAAACGCGCAAAACAAAGTAAGCTGACTTTGAATGAAAAGCTT
GAAATTGTAGACGAACATATTCCAGATATGACTGGATTGGAGCAAAATAA
AGAAGAATCAGAATCGAAGCTGATTCCATTACTGATTCCATTGTTGAAAG
AAGTCTCGGAAGTGTTTCATAAAGAATCAACAGTTTTAGTTCCCATATTG
ACTGGAAGCGTTGCTGAGAGGTTTTCAGTACCTTTATCTAGCGTGGATGG
AAAGTATTGGGGAATGACCAGGTTTAATGCGCATGATCGACACGCAATAT
TGAGTGATCATGACTTTTTGATCGAATATGCATCAGTGAGAGCAAGCTTC
AATCATGGTTGCGATATCCGTATTGAAACTCAATCAGTAAACTTAAATCC
AGGATTTGTAAAACTTCATGACTCATCTGGTTCAGTCATCTCAGCTAAGG
AAGTAAAAACAAGAATCCAAGAGGCTGTAATGAAAATTGATATCCGCGTA
ATTGACGGCTTTGATTCTTTCGAATCTCGCCCTTATGGTGCTTTTCCGAA
TACATTTATAGTAGGAGGCTACAGCAGTATATCTCAAAAGGGACCTGCAA
TATGCCTCAATTATCACATTCTGGAAAAACAGTTCTTTTATGCTGATTTA
ACTTTCGGAATACCTTGCCCAGGTGAGTGGCCATTTTCCTCAAATTGGCC
GGTGAGGACTCGAAAGTGGCCTCCAAGCGCCGACGTTCATCGTATTGTTG
ATATGGGGTTTCATTTTGTACCAAAATCTCAGGTGACTGATATGGAAGGA
GTTACATGGAGATACTCTTTTTCATTAGCCGAAGTTGAGTTATCGAGATT
GATATCGCCCGTAGCACGGAAATGTTTTATTGCATTGAAAATTATTGGGA
AAGATTTTCTAAAGCAGTGTTGTAAAAACTTTAAATCTTATCACATGAAG
ACAATTTTCATGTACACTTTGGAGAATACAGATCCAGCCCGATGGAACGA
TAACCATATTGAAACACTTTTTGATATGTGTTTGAATGATGTTATTAATG
CAGTTAAAATAAAGAACTGTCCCCATTTCTGGATCCAGGATGTCAATCTT
TTTGACAATTTAACGAACGAGGATTTCAGTAAGCTTGAAAATATCCTGAT
GAAAATAAAAAACGTCCAGAAGATTATATCACGTGTCTGAATGTATCTTC
TACTGAACTTCACGAACACAACAAACTCTTCAGCTTTGGATAGCGATGAC
GCTGATACACTGAACGGTGGTGTAATATATCTTTAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.18943MSTRG.18943Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18943.1.p1.exon2MSTRG.18943.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18943.1.p1.exon1MSTRG.18943.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18943.1.p1MSTRG.18943.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210_pilongenomesc0000210_pilon:304782..309815 -