MSTRG.18492.2.p1 (mRNA) -

Overview
NameMSTRG.18492.2.p1
Unique NameMSTRG.18492.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000199_pilon:547385..551310+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.18492.2.p1 ID=MSTRG.18492.2.p1|Name=MSTRG.18492.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3926bp|location=Sequence derived from alignment at sc0000199_pilon:547385..551310+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaaacGGCACGCGAAAGGTCTCTGCTCCTCTTTGAAAGTTGTGTATAA
AAGGAGGGGGAGGGAACACAAATCATTTAGCAACTTGAAGAGTGAAGAAG
AACTTGAAGAAGCAAATTAGAAGTATAAGATGAATACAATCTGTGTTACA
CTAAGCTTAATCTGTATAGTAGCTGCTATATCAGCTGAAAGTAAGTATTC
AATGATTTTATCTGTAATGTGTGTAAGGCATTTGGACCCAATTCGCGAAA
GGAATTTTATCTTTGTAATGAAATTCATGTAGTAGCGTTGTGAGaaaaaa
aGTCATGATCAATCATGAGCCATAACGTGCTGCGGGCATATtcagatctt
tatttttcgataTTTCTTGAACCACTTTGTGATTCTATTAATTTCACTGA
ATTCAATGATAAGAAAGGCAAGCGGATTTACTGACACTGACACTGCGTTA
GTATCGGAATATGAATCGATGTATTCTCGTTTCTTCTTTGCAGGATGCGA
AGACAAATACCCTGAGAAATGTTACCAACAAGTTGTCGTTGGTATCAATG
GAGAAAAGCGAAGATGCGGTAGTGGAGATTTCTATTGGAATGTTTGCCCT
AAATCGTGTGGAGCATGTGGTAAGGAACCATAGAAAAATTCTAATGTAAC
TTTTTATGAGTATTTGGGTGTAATATTCTAAGATATTATATGTTAAATAC
GAGCTCCCAAAAAGCTCTATGTCACCAAAATTTTGGGATTAGTTCGGCAG
CAGCGCCATCGTTATAACTTTACGAGTTCTATACGTCCAAATAAAGGTGC
AAGTCTTTTGGGAAATTCTATTTGGCAATTTTATCATGATCATACCTTTA
ATGTACATTTTCATAGAACAAGAAATGCGTGACTTGTTTGCCCAAATTTT
CAGGTCCCTCCAAAAGAGAAAACACGAAACGTTCATGCGACTGCGATAAT
GTCACTCCTGATTGCGAAGACTATTGTCTTATGGAACAATTCTGTGATTC
CGCATGTAAACAAGGCTTAGCTGGCCCAGAATGCAACTGTCCAGATCATC
CAATTGGCAAAAGAGAAGGTAAAACCATGTTAATAGACATTTTCATCatt
tacgtcacgagcaacgcttacctcgttttcaaaatattgctatggtaatt
ttATTCCCTGGGGAATTCGCTATTTTAAAAGTAAGAAATGAAGCAtcaag
ggatttaatcaccttggtaacgGTTTCAAAACGAAGCAGTCGTCGcacta
aaaataatttatgaaaaggccaaTTCCTTTTTCAATTATACAGTATGCCc
ggaaaaaaagtgaaacagataGTAGTTAAATCTCCAAAAATCTATTATCA
AATACACTCCCTTCTTACAAACCTACTGGGAACCCTTatatatcgtcccc
ggtggaaaattatcctccaaattttgtccccccctgaaaataatcaaata
aaccaatcctcactgcaaaatattccctattttttccatccccaatgaac
tttctgactttaaaacaaagaatttaaatccccttTCATAAAACATATAT
GAATATCAagccccatcgagtttcagtcggttaattttatccccactggc
tgaaaaagtcctaacgggtctgtgagaaggggtgttcaAATTGGAGTTTA
GACAATCAAACTAATGGAATTTCACTGTTGAATCGTTTAGGTATCCAAAa
gatataattaaaattttttttttttaacttgtgTATAATTAGGTATAAAA
GATCTGTTctgttttttctctttatttgtctttgattttttGAGATATTG
AATATTAAGTCAGCACACTGGTTCATTGTGAGAATCTTGTTCATTTGCGA
TGAAATCTCAACCTACTATTTGGAAAAGACCTACATTCTACTCTAGGCCA
CCTAAAGTCATGTGATTGATGCACTTATAATGTTGAGGGGGAACACACAA
AGAATAAAACTTTAATAGTAAAGGAGGGAAATTGTCCaaaaaaaTctgtt
ttgcacctttgtataAGGTAAGACTATGCTAACAATAAAAACTTTCTAAT
TTCCAGCACACGCCAAAAGAAATAATGTCAAACGAGAGTGCGACTGTCAC
GATTTCGATTGGGATTTGATTACCCCCGATTGTGAGGATTACTGCGTGTT
TCAAGAATTTTGTTCAGAAGCATGCATTGAGGGTATCGGTGGACCCGAAT
GCGGTTGTCCCGGCCACCCAATCGGCAAAAGAGGAGGTACATTTTTATGA
TCATCTTTATGTATCAgtttttgcgggaattaaatttggtgggtttagca
gttttcagccaaaattttcatcattttttagtTCTTAAAACGTAAAATCA
GCATTTTCAGGTCAAATACCAAGTAGTCTTCGcatcaccaaattaaattc
ccatcaaaaaattcttttcggCCAACCAAAAATTAAGGGAACGCCGAAAC
ACTTAAGGTGTATTTAGAACCTTTTATTCAGTACATCGAAACCAAAGTAG
CTAATCTTGGTAAATATGGACGACATCTTGCGGAACCTTTTTCTTGTTTC
TCTATcaattattattaattattaattatttattattaagaTTTTTCTCT
AGTTTCCATTGGCTATCACACTGTAGTCGAACTTATGTTATTTTAAGTTT
ATTCTTGCATCACGAGCATGAATGTCGTTCCTCTACAGCTTTTCAAATTA
GTAGAAACCGAAACTAGAATACCGTAGCGGGACCGTAGCTCTAGATCgaa
cataccttatcggggaaaaaatgttgggggaaagtgacgaaaattttgag
ggagtgacgaaatttccccccgacgaattttttccccgatattttatcac
ccgatcaaaacttttacccgGTTTTCCAATCCCGACCAAGATCTTccccg
atttttttatttcaacagaAAAAAGGATTTCTATCGTAGTTTTCCATTTT
AAACGTTCCATGGATGTTTCttaacaaaacaaataaaatgactTTCTTTT
CAAACGAGTTCTTTTGCCTAAACAACAAGCTTATAGTTAAAACTACaatg
gtttgataaaaaataacaatagtaACACAATGTCGGTCGTTGGTCAAGTc
tttaaaaaatccaaatattaacaaagtttttatttaaaagatgtCCCTCA
TTTCTGGGCATTTTTGACAGCGAGAAAAGGTAGTAGTTTGTAGCAGTAAT
TTAATGTTGTGATAAAACTATTGAAACAAATGAGCATTACTAAAAATCTT
GATAATTCCTTTTTATGCTCTATATTTTATCgggaacatttaaaaaattt
ggtcggggaaaagtgacgaatttgaaattttggttgggggaaagtgacga
aaattcctctaggtgacgaaatttttcaccaacgaaaaaaaacccgacta
ttaaataaaactccgacatttttcccCAATAAGGTATACTCTGGTCTATA
GCGCATATGATTTACACGAAAACACGAGTAGAACTCTTTTTTACGTACGC
GGTGGTTTCGGTCTATCTTACAATTTTCATTTAGTGAAAATCTTTCGTTT
TATTAAAGTTATGGCCGGAAAATACCGACGCACCATGATGGCAAGGATTA
TGAAGGAAAAGAGAAACTCAAAGTAGAGGAGAAAAGAAGATGTTCAACCC
AGCAAAATCGATCACAATCAAACTAGAACGAGAAAACTGACATCCGATTA
ATCCCATTCCACTCAAATAACAACAATAATCAATCGATGCTTTTAGCTAG
TATAGTTAATTTCATTTAGATTTTTGTAATTAATTCAGTGATATACATCA
TAGACTTTAGACTTTTTTAGAACGAAAAGATTTGTATTTTTTCCAAGTTA
ATAATAATATAACCACTCGAAATGAACATATAATAATAGCTATTCGTGAA
GTTATCAATTAGTGTGGAATTagcag

Coding sequence (CDS) from alignment at sc0000199_pilon:547385..551310+

>MSTRG.18492.2.p1 ID=MSTRG.18492.2.p1|Name=MSTRG.18492.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1896bp|location=Sequence derived from alignment at sc0000199_pilon:547385..551310+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATACAATCTGTGTTACACTAAGCTTAATCTGTATAGTAGCTGCTAT
ATCAGCTGAAAGTCCCTCCAAAAGAGAAAACACGAAACGTTCATGCGACT
GCGATAATGTCACTCCTGATTGCGAAGACTATTGTCTTATGGAACAATTC
TGTGATTCCGCATGTAAACAAGGCTTAGCTGGCCCAGAATGCAACTGTCC
AGATCATCCAATTGGCAAAAGAGAAGCACACGCCAAAAGAAATAATGTCA
AACGAGAGTGCGACTGTCACGATTTCGATTGGGATTTGATTACCCCCGAT
TGTGAGGATTACTGCGTGTTTCAAGAATTTTGTTCAGAAGCATGCATTGA
GGGTATCGGTGGACCCGAATGCGGTTGTCCCGGCCACCCAATCGGCAAAA
GAGGAGTTATGGCCGGAAAATACCGACGCACCATGATGGCAAGGATTATG
AAGGAAAAGAGAAACTCAAAGTAGATGAATACAATCTGTGTTACACTAAG
CTTAATCTGTATAGTAGCTGCTATATCAGCTGAAAGTCCCTCCAAAAGAG
AAAACACGAAACGTTCATGCGACTGCGATAATGTCACTCCTGATTGCGAA
GACTATTGTCTTATGGAACAATTCTGTGATTCCGCATGTAAACAAGGCTT
AGCTGGCCCAGAATGCAACTGTCCAGATCATCCAATTGGCAAAAGAGAAG
CACACGCCAAAAGAAATAATGTCAAACGAGAGTGCGACTGTCACGATTTC
GATTGGGATTTGATTACCCCCGATTGTGAGGATTACTGCGTGTTTCAAGA
ATTTTGTTCAGAAGCATGCATTGAGGGTATCGGTGGACCCGAATGCGGTT
GTCCCGGCCACCCAATCGGCAAAAGAGGAGTTATGGCCGGAAAATACCGA
CGCACCATGATGGCAAGGATTATGAAGGAAAAGAGAAACTCAAAGTAGAT
GAATACAATCTGTGTTACACTAAGCTTAATCTGTATAGTAGCTGCTATAT
CAGCTGAAAGTCCCTCCAAAAGAGAAAACACGAAACGTTCATGCGACTGC
GATAATGTCACTCCTGATTGCGAAGACTATTGTCTTATGGAACAATTCTG
TGATTCCGCATGTAAACAAGGCTTAGCTGGCCCAGAATGCAACTGTCCAG
ATCATCCAATTGGCAAAAGAGAAGCACACGCCAAAAGAAATAATGTCAAA
CGAGAGTGCGACTGTCACGATTTCGATTGGGATTTGATTACCCCCGATTG
TGAGGATTACTGCGTGTTTCAAGAATTTTGTTCAGAAGCATGCATTGAGG
GTATCGGTGGACCCGAATGCGGTTGTCCCGGCCACCCAATCGGCAAAAGA
GGAGTTATGGCCGGAAAATACCGACGCACCATGATGGCAAGGATTATGAA
GGAAAAGAGAAACTCAAAGTAGATGAATACAATCTGTGTTACACTAAGCT
TAATCTGTATAGTAGCTGCTATATCAGCTGAAAGTCCCTCCAAAAGAGAA
AACACGAAACGTTCATGCGACTGCGATAATGTCACTCCTGATTGCGAAGA
CTATTGTCTTATGGAACAATTCTGTGATTCCGCATGTAAACAAGGCTTAG
CTGGCCCAGAATGCAACTGTCCAGATCATCCAATTGGCAAAAGAGAAGCA
CACGCCAAAAGAAATAATGTCAAACGAGAGTGCGACTGTCACGATTTCGA
TTGGGATTTGATTACCCCCGATTGTGAGGATTACTGCGTGTTTCAAGAAT
TTTGTTCAGAAGCATGCATTGAGGGTATCGGTGGACCCGAATGCGGTTGT
CCCGGCCACCCAATCGGCAAAAGAGGAGTTATGGCCGGAAAATACCGACG
CACCATGATGGCAAGGATTATGAAGGAAAAGAGAAACTCAAAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.18492MSTRG.18492Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18492.2.p1MSTRG.18492.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18492.2.p1.exon1MSTRG.18492.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18492.2.p1.exon2MSTRG.18492.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18492.2.p1.exon3MSTRG.18492.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18492.2.p1.exon4MSTRG.18492.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000199_pilongenomesc0000199_pilon:547385..551310 +