MSTRG.18479.1.p1 (mRNA) -

Overview
NameMSTRG.18479.1.p1
Unique NameMSTRG.18479.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000199_pilon:327312..333847+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.18479.1.p1 ID=MSTRG.18479.1.p1|Name=MSTRG.18479.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6536bp|location=Sequence derived from alignment at sc0000199_pilon:327312..333847+ (Clytia hemisphaerica_ch_hm2_pilon)
aaattttttttcaacattgaTGGAGAGACAGAGGTGGATTTGGTAGTTGG
TAAGAAAAATCTGACTTTTAAGGAAAGCACTTTTGCCTATAGCTTGATGG
ATGCCTTTCGACTTAAGGGCTGGCTTTTAATAGACTTTTTCTCAACTTCT
TATGAGCTAGAATTTGAGGATGGGTGTGTGTGTCTGAGTTTTTTCAGTCA
AAGCTAATTTTGGCTATAAAGCTTTGGGGTAGCCCCTGGGGAGGGACTTA
GGCAAAATAAGGTGGGGGGACGTGCCGCTGTTCAGGATTCTTTTTCAGGC
CCTGAAAATCTCTGATGGGGTCACAAAATTACCGTGGCTGATTCAGCCAA
TTGTGTTTGTGTTTGAGTTGCAAACTCTCGGCCGAACTTTCAGATTCTCG
GCCGAGAGTTTAAATTTCCGGCCAAGAGCTTAAAAAATCTCGGCCGACTA
TCGTTACGATAGGCCGAAAATGCATAGTCAGGGCCGACAGGGTCCAAATT
TCGCCCAAATTTTGTCTATTAGGGTAtggattttgtcaaaaattagtATC
TGActgggtccatttttcaaacggGGGTAGCctctcaagtgagttacggc
atgtccaaagtaaaagtgaagcagtttcactcactttcaaaatgtcaaac
atagctggaaagaagcgcctTATGATGTAGATCAACGCGATAGctgtatg
aaaaatttaacttaaggctataagaagttatatCCCAAAAACCTGtaata
tgacgtcataaacattatgtaacattacgtcattaaactaaaaatttgaa
tatctcgtgAACTAAAAGTCatatcatagtcattataaaaaaacactggt
ctggcaatgtattgttttagctttattgtcgaattttcttttgttataaa
taaaaggcaagttgcgatttgcatactttttgatcacgttaccaaattct
cgttttgggattggtctaaatttcaatcacatgatcaaaaagtatgcaaa
ataaAGTCGATTTGCGAACACAAGCTTTATCtgttaacaatagaaagaaa
caaaagccttccagaccggggttttttataatgactatggtcaTATACac
gtcaaattttgaccataaaTAGATATTGAtgtaagaaaaattttgaattg
aaaattttttgaaaaaaatgatgacgtcattttttagagccaaaaatcga
aaatagcttaaaaacgcTGACGTTATCATTTTCAAgagatttggaatttt
ttaaatctagagAATTACGATATATTTGTTCTGTCAAAGTTTCATATTGA
TATCATAAACAGTTTTTgagttattcaaatttttagtttaatgacgtaat
gttacgtaatgtttatgacgtcataatagaggtttttgggctataacttc
ttatagctttaagttaaatttttcatacagCTATCGCGTTAATCTACATC
ATAaggcgcttctttccagctataattgacattttgaaagtgagtggaac
tgcTTCACTTTTACTTCGGACATGTCGTAACTCACTTGAGCTGGAGACCT
CAAAAATGGTTggtggatttggctgaaattttccaCACTTGGTCTCTGGG
TACATACATGGGGGTGTACtttccattttttgtaaattttgatttttggg
gcctgtggacaagtttttttcagccttaaagcTAATTTTAGCTTAAAAGC
Ttttgggcagcctggagacttaaaaaatggttggatttggctaaaatttt
gcacaattgtTCCTCAGGTGcaggtgtttttttcattttttgaaaatttt
gatttttggggcctggggacgggtttttCACAAACGCTAAAATTGGGCCT
CCAAATAGTTGGAAAAAtgctgaagttgagcccagtgcgttgcgcacgct
CGACTAtttttttATCAGGCAGGGTTAAAAAACAGGGCGGCATGGGTCGC
TGCACTCCTAGGTCCAGACCTACCGGTTCAGGACCGAAAAAACGGCTTAT
CTCATATGATGCCAGTGACACTTAATGGGTTAAATAGAAATGAGATTGAA
AATGAGATTCCATTTAGAATGTCTATTGAGAGGCATTGTTATGAAAAATG
tttgacaaaacaaaaattttagaaaagcaaccattaaatcaaaattattc
tGTGTTACATTTCTAGTAAAAtagtgaaaaacaaagaaagaatgtCTGTA
TGGTAAGCGATCGTAATCGAGTGGGCACAGATACCTAAAAAGATAAAACG
AATGGAGAGTATTGTACAGCACTTTTAAAGGGAAACATTTTTTGcgagaa
cttaattttgcggagttctcaattcaaagaaaatcaaagtcGTTTTGTTA
ATTACTCGACGTTTGTTTTTCACCTTAGTAAAATCAGCCTAAtaataact
ttgaaaaattgatacCTTGTGTAGCTTTGTATCTACGGCAATCACATCTA
ACAGTTTTATCAGTGACCCTCACTTCGTGCAGAGAATCAGCTTCGCTCCT
TGATTGCAATCAAATGGGACCTTTCAACAGTtgtcaaaaaattattcaaa
tagtGGTCAGCACCATCCCAATCAGTCGACAAGTGGCCAGGGAGCCCCGT
AATTGAGAAGTCAGGAAAGGGTGGTGGTAAGAGGCTGGAGTTTAAGGctt
cttgttgttgttcttgttgttttcgcttttgtttttgtcgtctttttcgt
tgttcttcttgtGCGTTATCCTCGTCAGATGAAAATTCTTGCCACTTTTC
CCATCCGGAAGTTGATTGTTGTTGATCATCTAAAATTAAATCAATAGTAT
AACTCCTAAGATTAAGGAAAGATTTCCAGATATCATCCCGGTTTGGGAGA
AGTTTACTAACTTCTGGGTCCGGGTTAGCCTCTCAGACttgtttgaccat
ttttggACTTTACTACTCTatcttttgtttcattttatccTTTGACCCAT
CTCATCATTTCAGGCTAAACTTCCAGCGCGGCTTCGCGTTTATTTTCCTA
TTAAAAGGGGCGTGACCACAGTTTTCTAAAAGCCTGGAAAACAAAGCCTC
AAGGGTCCAACAGCAGTAGATCGCTTACCTTAATAAGGCACACATCAGGC
CGacaagccaatttttttttgcggcaTAGTTAGTAAATCAGGAccaattt
tggccaaaatgtaGGACAAATTAGAacaaaaataggctaaaatttAGGAA
AATTACTACATCAGTTAAGTTTTTGGACCAATTTTCATTATAGAATTTCT
CTTTCAGTTTTTCCATGCCATACTTGTTTTGTAATTTCCATTGATAGTTT
ATATTGAAAACCAAAGCAGAAAATTGATGAAACagagaaaatcatcattt
cattttaaagctactttttttctaaatttggaGGAAAGCACTTTTGCCTA
TAGCTTGATGGATGCCTTTCGACTTAAGGGCTGGCTTTTAATAGACTTTT
TCTCAACTTCTTATGAGCTAGAATTTGAGGATGGGTGTGTGTGTCTGAGT
TTTTTCAGTCAAAGCTAATTTTGGCTATAAAGCTTTGGGGTAGCCCCTGG
GGAGGGACTTAGGCAAAATAAGGTGGGGGGACGTGCCGCTGTTCAGGATT
CTTTTTCAGGCCCTGAAAATCTCTGATGGGGTCCCAAAATTACAGTGGCT
GATTCAGCCAATTGTGTTTGTGTTTGAGTTGCAAACTCTCGGCCGAACTT
TCAGATTCTCGGCCGAGAGTTTAAATTTCCGGCCAAGAGCTTAAAAAATC
TCGGCCGACTATCGTTACGATAGGCCGAAAATGCATAGTCAGGGCCGACA
GGGTCCAAATTTCGCCCAAATTTTGTCTATTAGGGTAtggattttgtcaa
aaattagtATCTGActgggtccatttttcaaacggGGGTAGCctctcaag
tgagttacggcatgtccaaagtaaaagtgaagcagttccactcactttca
aaatgtcaaacatagctggaaagaagcgcctTATGATGTAGATCAACGCG
ATAGctgtatgaaaaatttaacttaaggctataagaagttatatCCCAAA
ACCTgtatatgacgtcataaacattatgtaacattacgtcattaaactaa
aaatttgaatatctcgtgAACTAAAAGTCatatcatagtcattataaaaa
aacactggtctggcaatgtattgttttagctttattgtcgaattttcttt
tgttataaataaaaggcaagttgcgatttgcatactttttgatcacgtta
ccaaattctcgttttgggattggtctaaatttcatcacatgatcaaaaag
tatgcaaaataaAGTCGATTTGCGAACACAAGCTTTATCtgttaacaata
gaaagaaacaaaagccttccagaccggggttttttataatgactatggtc
aTATACacgtcaaattttgaccataaaTAGATATTGAtgtaagaaaaatt
ttgaattgaaaattttttgaaaaaaatgatgacgtcattttttagagcca
aaaatcgaaaatagcttaaaaacgcTGACGTTATCATTTTCAAgagattt
ggaattttttaaatctagagAATTACGATATATTTGTTCTGTCAAAGTTT
CATATTGATATCATAAACAGTTTTTgagttattcaaatttttagtttaat
gacgtaatgttacgtaatgtttatgacgtcataatagaggtttttgggct
ataacttcttatagctttaagttaaatttttcatacagCTATCGCGTTAA
TCTACATCATAaggcgcttctttccagctataattgacattttgaaagtg
agtggaactgcTTCACTTTTACTTCGGACATGTCGTAACTCACTTGAGCT
GGAGACCTCAAAAATGGTTggtggatttggctgaaattttccaCACTTGG
TCTCTGGATACATACGGGGGTGTACTTTCCATTTTTTGTAAATTTTGATT
TTTGGGGCCTGTGGACAAGTTTTTTTCAGCCTTAAAGCTAATTTTGGCTT
AAAAGCTTTTGGGCAGCCTGGAGACTTCAAAAATGGTTGGATTTGGCTAA
AATTTTGCACAATTGTTCCTCAGGTGCAGGTGTTTTTTTCATTTTTTGAA
AATTTGGATTTTTGGGGCCTGGGGACGGGTTTTTCACAAATGCTAAAATT
GGGCCTCCAAATAGTTGGAAAAAtgctgaagttgagcccagtgcgttgcg
gaCGCTCGACTAtttttttATCAGGCAGGGTTAAAAAACAGGGCGGCATG
GGTCGCTGCACTCCTAGGTCCAGACCTACCGGTTCAGGACCGAAAAAACG
GCTTATCTCATATGATGCCAGTGACACTTAATGGGTTAAATAGAAATGAG
ATTGAAAATGAGATTCCATTTAGAATGTCTATTGAGAGGCATTGTTATGA
AAAATGtttgacaaaacaaaaattttagaaaagcaaccattaaatcaaaa
ttattctGTGTTACATTTCTAGTAAAAtagtgaaaaacaaagaaatgagt
GATCCTTCTAACCCAATTGTTTTGTCATCTGGGGAAGAAGATTTTTACAT
AGAACAAACAACCAATCCAGTCAAAAGCGAAGACTGCAAAAGAGAAAACA
CTTACGTACTATCTGATAATGATGATGCTGTATCTTCAAATAATGACACT
GTATCTTCAAGTAATGAAAACAATGTGAATGAATCTTTTGAGGATGCCGA
AATTGATGCTGGCTACATGAGCCCGCCTGATGAAGATGTGAAATATTACa
agaacaacaaaaacattCCAATATTCAAGATCACTTCGGATATTGAATAT
TCTCCTCAAACCCTCATCGACTTACTTGTCTCTCGGAAAAGTGCAAGGGT
GGCCACAAAAAAGCCTGTCAAAGTTCAGGATAATTTTACATTTATTATTG
ATACCAAGAAATTGAAGAGCCCAAATGACTGGGCAGCAGATGATAATGGA
TGTTGGGAGAACAGGGGAAATTACGGTACTATTGTTTCACTCGACGAAAA
TATGAAGATAGTGCATTCCTCTCGCATGAACAACAAAAAGCGCACTGCAC
TGAAATCAGGAGAACTCCTAATATACAAAGTCTACTACAGAAACAAAGCA
TACCACGACTACAAAAGAAACTCTTATGTTATCAAAACACAGGATGATAA
AACACTCGATTTAGTGTTGGTTGAATACAGGTatcaattcttttattttt
ggagCTTAGCTTAGTCATAGCCTTAATATCATTTGAATCAGgcaatttct
gaaaataaaggAAGTGGTATCACTTCCTGGCCCATGACCCTACCTAATTC
TTACAGCCTATGGCTCTTAAATTAACCCTTTGTAGAGTCATAGACTACTT
TCTACTGTCAATGAGACAAATTATGAAATCTACTTCAATTTAATTCTTAT
TatattgaaagtattttttatcTCTGCTTACAGATATATCGGTGAAGTAC
GTCCAATTATTCCAAAACCACATGGACTggctaagaaaaataaaaaacct
ttcACTCCAACAGCTGAATCGCACCAAACACAGGAC

Coding sequence (CDS) from alignment at sc0000199_pilon:327312..333847+

>MSTRG.18479.1.p1 ID=MSTRG.18479.1.p1|Name=MSTRG.18479.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1578bp|location=Sequence derived from alignment at sc0000199_pilon:327312..333847+ (Clytia hemisphaerica_ch_hm2_pilon)
atgagtGATCCTTCTAACCCAATTGTTTTGTCATCTGGGGAAGAAGATTT
TTACATAGAACAAACAACCAATCCAGTCAAAAGCGAAGACTGCAAAAGAG
AAAACACTTACGTACTATCTGATAATGATGATGCTGTATCTTCAAATAAT
GACACTGTATCTTCAAGTAATGAAAACAATGTGAATGAATCTTTTGAGGA
TGCCGAAATTGATGCTGGCTACATGAGCCCGCCTGATGAAGATGTGAAAT
ATTACaagaacaacaaaaacattCCAATATTCAAGATCACTTCGGATATT
GAATATTCTCCTCAAACCCTCATCGACTTACTTGTCTCTCGGAAAAGTGC
AAGGGTGGCCACAAAAAAGCCTGTCAAAGTTCAGGATAATTTTACATTTA
TTATTGATACCAAGAAATTGAAGAGCCCAAATGACTGGGCAGCAGATGAT
AATGGATGTTGGGAGAACAGGGGAAATTACGGTACTATTGTTTCACTCGA
CGAAAATATGAAGATAGTGCATTCCTCTCGCATGAACAACAAAAAGCGCA
CTGCACTGAAATCAGGAGAACTCCTAATATACAAAGTCTACTACAGAAAC
AAAGCATACCACGACTACAAAAGAAACTCTTATGTTATCAAAACACAGGA
TGATAAAACACTCGATTTAGTGTTGGTTGAATACAGATATATCGGTGAAG
TACGTCCAATTATTCCAAAACCACATGGACTggctaagaaaaataaaaaa
cctttcACTCCAACAGCTGAATCGCACCAAACACAGGACatgagtGATCC
TTCTAACCCAATTGTTTTGTCATCTGGGGAAGAAGATTTTTACATAGAAC
AAACAACCAATCCAGTCAAAAGCGAAGACTGCAAAAGAGAAAACACTTAC
GTACTATCTGATAATGATGATGCTGTATCTTCAAATAATGACACTGTATC
TTCAAGTAATGAAAACAATGTGAATGAATCTTTTGAGGATGCCGAAATTG
ATGCTGGCTACATGAGCCCGCCTGATGAAGATGTGAAATATTACaagaac
aacaaaaacattCCAATATTCAAGATCACTTCGGATATTGAATATTCTCC
TCAAACCCTCATCGACTTACTTGTCTCTCGGAAAAGTGCAAGGGTGGCCA
CAAAAAAGCCTGTCAAAGTTCAGGATAATTTTACATTTATTATTGATACC
AAGAAATTGAAGAGCCCAAATGACTGGGCAGCAGATGATAATGGATGTTG
GGAGAACAGGGGAAATTACGGTACTATTGTTTCACTCGACGAAAATATGA
AGATAGTGCATTCCTCTCGCATGAACAACAAAAAGCGCACTGCACTGAAA
TCAGGAGAACTCCTAATATACAAAGTCTACTACAGAAACAAAGCATACCA
CGACTACAAAAGAAACTCTTATGTTATCAAAACACAGGATGATAAAACAC
TCGATTTAGTGTTGGTTGAATACAGATATATCGGTGAAGTACGTCCAATT
ATTCCAAAACCACATGGACTggctaagaaaaataaaaaacctttcACTCC
AACAGCTGAATCGCACCAAACACAGGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.18479MSTRG.18479Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18479.1.p1MSTRG.18479.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18479.1.p1.exon1MSTRG.18479.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18479.1.p1.exon2MSTRG.18479.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18479.1.p1.exon3MSTRG.18479.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000199_pilongenomesc0000199_pilon:327312..333847 +