MSTRG.18343.1.p1 (mRNA) -

Overview
NameMSTRG.18343.1.p1
Unique NameMSTRG.18343.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000196_pilon:139761..147938+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.18343.1.p1 ID=MSTRG.18343.1.p1|Name=MSTRG.18343.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8178bp|location=Sequence derived from alignment at sc0000196_pilon:139761..147938+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGAAAGAGCACCCGAAATTTTCCCGATTAGATATCGGGTTTTCAAGGCT
TTTAGTGTCATTTTACATGAATCTAGCCAACAACAATTtctaaaacgaaa
gtgaaagtgatttGAAATAGATGAGGGTAAAGGGGGTAAATGGTAAAGGC
TGCTGGCATTGGCCTTTCTAATTATATATCGTTTAACAAAAGCAGCTAAA
GCTCAAGTGAGGTAGATAGAAAAGAGAGGGGTCACCCACCAACAACCAAC
TGACCGAGCATAgtaagttttgatttttgtaatattttgaactcttttct
tttgtctttgctttgggttgatttttgagttaaatgaaaaaataaaataa
agaaaggaaaGCAGACAGCCAGACCAGATCAGTATTTTGTATTTCCTTTC
TTCCTTTTTCTGCAAGTTTAATAAAAGGTTCTACCACAATAGGGCATGCG
CCTTTTCTGTATTTCACAAGCAGTTACCTGCACGCAcatatttatttata
tgttgCTCTTCTTCACTTCTTCACCGTTTGGTCTCAGGGTCTGGTCTGGC
ATCTGGTAAGGTAAacaacccgtttttgcctgcgtttccttAATAGGAAA
AGTTGGTTTTTctagcttttcttaagttcgaACAGAATCCTCTCAAATTT
TAACATACTCTTGCTATTTATGCTATGGGGGGCCCCCTTTATGATATGAT
ACTACCCTGAAAAACTTTTCACCTGGCTGGTCactaaaatacaactacgc
agctctgctcgcagctctactctaccattttttaactttgtattttaatg
acaagCCAGGtcttttatttgagggctatgcatgttagcctctactgatg
caagttacccaatctcacggtatattaCCGTAAGTGGTCCTTAAATCCGA
CAGCCCCTACCTAAATCTGACCTCACAAATAACTGgctatatgaaaaaaa
ttctatgtttacaaacattccctctccaagtagaacaataaactatattg
caaaaactctcgaaacaaaacatctaacaagatgactaaaatgtcaagat
gtcaattaaaatgtgataaaaaagtgtgagttgtaaaaataagtccctct
attattctgaatctgttgctcgtgtttaaaacgttaacaattttgtaata
aaaaaacatgttttgtataagaagcaattattatGGGCTTATGATATATT
GCGCAAAGTAACGGAATTccgttaaaaatcaaaatctcttTTAAACTGAT
GAATAACTTGAAAATGTATTCCCAAAAGGCTGATAGGAGTGTTAAATTGC
TTTAAAAcacaaatttcaatcaaaaaatctaCTAGaatcatggaaaaagt
ttatCCTTTAAAAACACGTTTTTACATACTAAACTGTCTTTTTATTCAAC
ACGGGGGTCagaacattgaaaaaaaaagagctTCGTTACTTCTCTTTCTC
AACAAGAAAGAgggaaaaatttaaacaaataaaTTGATACATCTTAGACT
TGTAAACTGAATAGCTTTCTGTATGGTTTTTGCTCTTACATTTTAGAATT
CACTTTTGTAAgcatattattttcaaattagaTTCTTTTAAAGTATCAAA
GCTCAAAAGATTGATTACGGATACATTTGTTAAGATGAGGTTAgccgttt
tataaaaaaatgtaatggTTATCACAAGCCATTTGAATTCCATAGAGACA
GGggcgggggggtactagggttgcgagctgacgggggggtgccgcccgac
tttcgaatcttggacccttaccgggactaaaaaggagaaaacaaaggaaa
attttgggaatttcacgacccttagcgggacaaatttgaccaattttgac
caaatttcgatctttcagggggtaaaaagttgaaatttttctatttttcc
gacccttggtgggactgaaattagatttcctgatttttccaacccttagc
gggactttggaagtccaaaaaggtacccttaagggcggcacataccgtac
cctccatttgcctaagtacccccccccccccccggggacagGGGAAACTT
AGGGACTCTTTCATTTAGATTTTGTTGATACTTTGCAAAATTCCGTGttg
tatcaaaataaattctaagGGCTATAATGTACAATGTCCTAAATAGAAAC
AGGGATGTTACGAATCAGGTGAATCAGGAACCTTCATTtagaacttgata
tttagcAAAATTCCGTGTTATATTAATAAATTTCATAGTCATATTACAAT
ATCCTAAATAGAGACAGGGATGTTGTAAGCCAGGAACCTTCGTTtagaac
ttgatatttagcAAAATTCCGTGTTatatcaatcaattttttttttttta
tctataatatataggtaacacgaacaaataaaTTCCGTGTTatatcaatc
aatttttttttttttatctataatataggtaacacgaacaaataatacaa
aactaaaggttcctagcctcccgcaaaaggaccaccagatcatacgcCAG
GAGGTaggaacccaaactaagcttttctctggatgttcctctgaaACATC
CAGTTATTGCAAGacaagcatcatattgaactgattctagtttttcagaa
aaagtggAATTACCTGGACGATCATACACGACATCTCCATAATCTAGATG
TGGTCTAATATGGGTTTTAAATATCGTGACTAGTGAATCCCTAGGTAGGA
ATGCACGAAGCCgacgaataagaccaataccttgattagcttttttaatt
ttttcatcaagatgaCGGTCAAAAGCCAGCTCTCGATCaagtatgagacc
aagatgtttttgataatCTTGTCGAGCAATGGCTGCGTtgttaaaataaa
tttctggAAGATCAGGTAGGTCGTTAATATATATCAGAAAGAAGAGCGGT
CCTAGAATAGAGCCTTGAGGTACACCGGCCAAGACCTCCGTCCAATTGGA
AGCTTGGCCATCAAGAACCACCCGCTGCAACCTAcctgagagaaaatttt
gaagtaaTGAGAGAAGGGGCCCGGACACACcatatgacttaagtttgaaa
attagcCCATCAtgccaaactctgtcaaaagctttggaaatatcaagaaa
tactCCACGAGTATCTAGAGGTGGATTTGAATCGAAACCTACCAGGGTGT
CGTGCGTTATGGACAAAAGCTGGGACACACAAGAGTCACCCTTGCGGAAA
CCAGACTGGGAAATAGtaaaaagattgttgttttcaaaatagGTGTAAAC
AGagtcaaagatgcatttttcaaagattttaccaaaaataggtAGAAGAG
ATACTGGCCTGTAGTTTTTTAACACACTCTTGTCccctttgtttttttat
aaacaggGACAACATTTGCTTTTTTCCGATTCGATGGAAAAACACAAGAA
TCTagggaaaattgataaattttcataAGAGGTTTAACCAAGGATTCATC
ACAGATCTTAATCATCTGTATGGAGATGTCATCCCAACCATGCACTTTGT
TAGATGTAAGTGCGCGTATAAGGGctaaaatttttgcttcatcAAGAGCG
ATATTGTTTATTTCAAGATTTGTAGCAAAGCTTTGTTGTGGCAAAACACT
ATCAGTGTCTATGAGAGAGCACTGATTAGCAAAAAATTTGTTAAacatat
ttgtttttgttggaacATCAGCAATGAGATTATTGCTGGAGTCTCGAACA
GGGGGATCCTTGGCGTCTTCCTCTTATgaagaaatttatttaaaatggaT
CAGTATTTTTACGTTCCCAGATTTGGATCACTAAAATTAGTTGCTAAacg
agaaaaataagaattttttgcatcTCTGACTGCCCTTCTACACCTAGACT
GATGTTCATGGAGGGTTTCAAGATCTTCTACCCTCCTCCCATTTTTGACA
TACCGCTTATAAATCTTAGATTTTTCGAGCAGGGCTCTCTTTATCCCAGC
CGTCATCCATACTGCATCCTTATTCCTGACGGTTATGACCTTATTTGGCA
CGAAATTTGACATGATATTGATTATAGTTTCAGTCATAAGAGAAACCTTC
CCGTCGACATCAAGACCCTCAAAACATGCATCCCAGTCTACCATGTCTAA
TGCCCTCCGAATAGGAATGGGGTTTGCTTTGGAAAAGTCCCAGATTTTAC
GTTCATAAGATGGAGCTAaagggattttaaaatttaatttgcaAAAGGTT
ATCTGGTGATGGCATTTAGGGTGCAAAGAGGGAAGGATACCAGAATCCAA
GACCAAATGATCTGCTGATGAGAAAATTAGATCGATGCAAGAAGAAGAAT
TTTGAGAGAGGTGAGTAGGTCCATCAATTAATTGACGCAGACCATGCTGG
GTAGCTAGATTTTGAATATCTCTACCACCAGGATCAGTGACGTCACCGCC
CCACCAGTCAGAATTCTTGACATTAAAATCCCCAAGAAAAATTGTAGCAG
TCGGAGAAGAATTATTAATGTTTATAATTGTCTCCTCCCATTTACGAGAG
AAAACCTCAAACTCATCAGAAGTCTGACTGGGGGAGCGATaacaaagaga
aagaaaaaaccgGTTCCCACCGGTTTTCATTCCGTGTTATATCAATAAAT
TTCATAGTCATATTACAATGTCCTGAATAGAGACAGGGATGTTATATGCC
AGGAACTTTCGTTtagaacttgatatttagcAAAATTCCGTGTTATATCA
ATAAATTTTATAGCCATATTACAATGTCCTTAATAGAGACAGGGATGTTA
TATGCCAGGAAATTTCGTTTTGAACTTGATATTTAGCATAATTCCGTGTT
ATATCAATAAATTCTAAAGCTATATTACAATGTCCTGAATAGCGACAGGG
ATGTTATGAGCCAGGAACTTTCGTTtagaacttgatatttagcAAAATTC
CGTGTTATATCAATAAATTTTATAGCCATATTACAATGTCCTAAATAGAG
ACAGGGATGTTATATGCCAGGAACTTTCGTTTTGAACTTGATATTATACA
GCAATAAATTTTAAAGCTATATCACAATGTCCTAAATAGGACGTTTCTAT
TCAGGACATCGTAATCTAGctttaaaatttattgatacaagacggaattt
cgctaaatatcaagttttAAGCGAGGTTCATtagtcttacatccctgtct
cgtgCGATTAAATAGTAAAATGACttcaagtttattgatataagacGGAA
TTTCGCTTATTATCAAGTTTTAAACGAATGTTCCTTGTCTCACATCCCTG
TTTCAttctatgaaaaagtaaaatgactTCAAGTTTATTAATACATGACG
GAATTTCGCTAAGTATCAAGCTGTAAATGAAAATTCATTAGTCTTGCATC
CCTATCTCATGCGATATTAAATAGTAAAATTATTGATATaagacggaatt
tcgctaaatatcaagCTGCAAATGAAGGTTCATTAGTCTTACATCCCTGC
CTCATGCGATTAAATAGTAAAATGGTTTTAAAGTTTATTGATATTAGACG
GAATTTCGCTAATATCAAGCTGTAAATGAAAGTTCATTAGTCtcacatcc
ctgtctcgtgcgattaaatagtaaaattattgatataagacggaatttcg
ctaaatatcaagCTGTAAATGAAGGTTCATtagtcttacatccctgtctc
atgcgATTAAATAGTAAAATGGTTTTAAAGTTTAATGATACAtgacggaa
tttcgctaaatatcaagCTGTAAATGAAAGTTCATTAGTATTGCATCCCT
ATCTCATGCGATATTAAATAGTAAAATTATTGATATaagacggaatttcg
ctaaatatcaagttgtaaatgAAGGTTCATTAGTCTTATGTCCCTGTCTC
GTACGATTAAATAGTAAAATGGCTTCAAAGTTTATTGATATAAcacggaa
tttcgctaaatgAAGGTTCGTTAGTctaacatccctgtctcaaatattca
tatttttctttcaataattttttcttttgattctttGATAAACAGAACAG
AAAAGAATCTTACAGGAGAAGTCTTGAATCTTAATCCTTTGATTTTCTTA
TAAGAGAGATGTCTAATAATCTATTTAAAATTGTTTAACACTTTTTGATA
AACAAGATAAATTTTAGTAGatatacattaccccctgatttaagaaaaag
agaaaagagaaaaagacggAACGAAATTCCGTTACTTTGCGCAAAGTATC
ATAAGCCATTATtatgttatttggttcaattggctcagtgtatcaaatct
ctcagtttagttgacactttggtatcttcgtcgcatcacagcgaaaggtt
ttttattttagtttgtatctttgaaagaccttATCGGAtataggcagggc
tgtcggatttaggaccactcacggtattccTTCAATTTGTTACATAAATT
TTCTGAACAAGTTTcgtttattcaattttaaaacagtACCACTATTAATA
GTCAGGTTGCTGTTGCtagaacatttttttagaaatttcagtgtgaagaa
tctaaaacctttttaaaacttGTTATGACATCAAAAGATCCAGAAACTTA
tgaagtttgtttgttttcagttgTTCAAATGCATACACATCCATATTTTC
CTTGGGACTTACACgaatgaaattaattaaaaaaatcccaacaaaaaaaa
tatttaaaagtacAGTAAGTAATAATCGAAAGTTTTTTCGTTTTAAGCTC
AATAAAACAATGGTAATGTTAAAGAATATCCCTCGAGTTTTGTCACCCGA
TTTACTATCAGTTTTGGCAAGAATGGGTCATGGTGATGAAATTGTGTTAG
CTGATGCCAACTTTCCAAGCGCTTCAACCGCTAAAGCTGGTCCTGAACTT
GTAAGATATTCTTCAGAAAGTCTCAATGACAGAATAGAATATTCGATAGT
GACCATTAGTGTCTTTGCATTTTAGCTGCAATATATTTTTCCCAGATTAA
AACTCTCTTTTGTCCTGGACTCGTACAACATTCTATAGTAGCCTTAAGCT
CTAGCTGAGTCTCAATGGAAGATTTAGAATACTAttgtttttgtatttga
attctCATTATAAAAACGACGTTATTCAACTTATAATTGACAAAAGTTAT
TTCTTTTATCTCTAAGATTTATAAAAAGAGATTCTCATCTATTCTCAAGT
AAAATCGTGTTTTTTATGTGTCCAAAATAAGTTAGCTTTATTCAAAATCA
ATTCGCTTTAAGTGTTTTGTTTTGCTTCccatttttcaaccaaatatAAC
AAATTATAAACCTTTGAAAAGATTATTCATAGCACTataattgaagatga
aaaattaagaagaaaaatgaagtccATTTTTGGTACTAAGGTACTTTGAA
GCTTCCTGATTTCAGATATACAACTATTTTTCAAATAGAATTGTTACATA
CGCAATTATAGATCTTAAAGGTTGCCCGTTGGAGTaaaagaaaaactaca
aaaaacGAGGCTTTTCGACTCCAAAGAGCTACTTTTCATAGTCTGTAAGC
CTCAATGCAAGAACTAACtacataataaataaataagtaaataaatttAT
TGTCTTAATTTTCTAACGTTGttagaatattttttctcaataattatagt
gctctgaattatcttttatGATTTGTTATATTTAAGCAGTTGTTGgaaaa
tggcaagcaaaacaaaaagtagtgctcatttaaaacattttagatAAGAG
CTGACGGCCATGGGTGTATGGAAATATTGAAAGgcgttttaaaattatta
ccACTTGATATGTACGTTGAAGCACCTGTCATGTTAATGGACCCCACCGA
AAGTGACAAAGTCAAGGGAATCAAAACTCCGATTTGGGAAGAGTACAAAG
CAGCAGTCAATCAATCAGaagggaaaaatatttcagtttcCTTAATTGAA
CGATTCGAATTTTATAAACGCGCAGAAAAAGCATTTGCAGTCGTTGCTAC
AGGAGAAAATGCGCTTTATGGGAATATTATCTTAAAGAAAGGTGTTTTGT
AAGCTATGATTTAACtgtttactcttaggtgccaaataaacggggggctt
cgaataaacggggggacctaatttccggggggtttgaaaatggaccttaa
aaaccctaaaaatggtcaaaatagactaaatttaggccttTTAGAGAAGA
Caaggaactttccttttggtagctggga

Coding sequence (CDS) from alignment at sc0000196_pilon:139761..147938+

>MSTRG.18343.1.p1 ID=MSTRG.18343.1.p1|Name=MSTRG.18343.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=900bp|location=Sequence derived from alignment at sc0000196_pilon:139761..147938+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTAATGTTAAAGAATATCCCTCGAGTTTTGTCACCCGATTTACTATC
AGTTTTGGCAAGAATGGGTCATGGTGATGAAATTGTGTTAGCTGATGCCA
ACTTTCCAAGCGCTTCAACCGCTAAAGCTGGTCCTGAACTTatAAGAGCT
GACGGCCATGGGTGTATGGAAATATTGAAAGgcgttttaaaattattacc
ACTTGATATGTACGTTGAAGCACCTGTCATGTTAATGGACCCCACCGAAA
GTGACAAAGTCAAGGGAATCAAAACTCCGATTTGGGAAGAGTACAAAGCA
GCAGTCAATCAATCAGaagggaaaaatatttcagtttcCTTAATTGAACG
ATTCGAATTTTATAAACGCGCAGAAAAAGCATTTGCAGTCGTTGCTACAG
GAGAAAATGCGCTTTATGGGAATATTATCTTAAAGAAAGGTGTTTTGTAA
ATGGTAATGTTAAAGAATATCCCTCGAGTTTTGTCACCCGATTTACTATC
AGTTTTGGCAAGAATGGGTCATGGTGATGAAATTGTGTTAGCTGATGCCA
ACTTTCCAAGCGCTTCAACCGCTAAAGCTGGTCCTGAACTTatAAGAGCT
GACGGCCATGGGTGTATGGAAATATTGAAAGgcgttttaaaattattacc
ACTTGATATGTACGTTGAAGCACCTGTCATGTTAATGGACCCCACCGAAA
GTGACAAAGTCAAGGGAATCAAAACTCCGATTTGGGAAGAGTACAAAGCA
GCAGTCAATCAATCAGaagggaaaaatatttcagtttcCTTAATTGAACG
ATTCGAATTTTATAAACGCGCAGAAAAAGCATTTGCAGTCGTTGCTACAG
GAGAAAATGCGCTTTATGGGAATATTATCTTAAAGAAAGGTGTTTTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.18343MSTRG.18343Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18343.1.p1MSTRG.18343.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.18343.1.p1.exon1MSTRG.18343.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18343.1.p1.exon2MSTRG.18343.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.18343.1.p1.exon3MSTRG.18343.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000196_pilongenomesc0000196_pilon:139761..147938 +