MSTRG.17744.3.p1 (mRNA) -

Overview
NameMSTRG.17744.3.p1
Unique NameMSTRG.17744.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000182_pilon:516060..518292-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17744.3.p1 ID=MSTRG.17744.3.p1|Name=MSTRG.17744.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2233bp|location=Sequence derived from alignment at sc0000182_pilon:516060..518292- (Clytia hemisphaerica_ch_hm2_pilon)
GTCGAGCAGTCTAGCCTGTTGTCACATACAAAAAGCTGTAGGTTGATGCA
GAAAGAAGCAGAAGACAATGTCATGACATTACAAGGTCGTAAAATCAAAT
GTTCTGAAGCTTATGAGAGGCTCTTGGAAAGTCGTGACTCAGTTACCAAT
GCAAATAAATTGATTGGGAAGTACAATCAAGAAATTGAAAATTTGACTGG
GAAATTGAAAATACTCAAACCGTGTGTAAAATTATTTTTACTCTAAGAAA
CTTTCTGATACATTAAATTTTAGAAGATTCCAACTAGCACATAACGTTCT
TTCAACGTTCGTCTAACGTTAAATGGACGTTGTGAACACAAGATAAACGT
TGAAAGAACTTTGTGAGATTCATATTATCTCATGATATTATGATTTCATC
CGTATGTTTGTGATTTAATTTTCAGAACTAACAAAGAAGTGTCAGACTTT
GAAGAAAATGAATTGCAACTTACTCCTATAAAACCGTGAGTGTTAATAGG
CGTTAGGCCATCTTTTTATAAAGAGTCGTTAGAGTGTAATCCACTCCCAC
CCGAGTATTAGCAATGGGCTTTTCAAGAAAAAATTGAATATGGGGGTGGA
AGATGTAATATTTTTGGAAATTTACCACCCGGACATTGTGACTTTTGACC
CCCCCCCCCGACAGCAGATCTACCCCCCCGTACAAGCATCAGTTGACCCC
CCTGGACATTTGAAATTACCCTAAAACTCTGCAAAAAGTGTCCCCAAACA
GAGCAAGTTTACCCCCCCTGGACAAGGAGAATTTTGTAGATTTTTCACTA
CCCCCCCAGACACTATATCTTCTACCCACACTATATACAGACATTTCTTG
GAAGAGCCCAATGTGAAATTTGTGAGATCGAAACCCATTCGAATCGTTTC
GCACTTCCCGTAAGTGTATATTCCAACATATATAGGGGGATTTTTAAAGA
AAGAAAATTCCTTTTTATTATAGAGCACCTGCTGTTTACTTCGTACATTA
CGGTCCGAAAACCATATTGTCAAATTTTGTTTGTCAATATATTGTGTAGT
CTAAGTAGCCCTTTAGGAACCAATTCATTTGTATGACCAGGTCGGGACTT
GACCGACAACCTTGCCCACCGGGACCGAATGTAGTTCTTCCAATACTGTG
TTTAAAAGCTAAGGAAAAACATATGTTTTATTCTATTTATTCGTCCATCA
GGTGGTCAAAATATGATCGTAATGACAATCAACAAAATAGCGGTTTGTTT
TAAATATAATTTCATTCATTGATTATTTATCATATGTATTGGTTCTTTGA
AACTTACCTTAAATGAATTAATTTACACGAGAATTATATTTTGCGAGTTT
CCCAAAATTCGTGAAATTCGCGAAATTTGATTCTCGTAAAATCTTTCAAA
CCTGAATTCTTCCCAAAAACCAATTTTTTGCCAAAACCCCTAAGAAAATT
ATAGATATTAGTTGAAAAAGAGGCCGATTCGCGAAAATAAATCCCACAGA
AAATTTTTTTTGAAAAAAAATTATCTCGCAAATATTGAGGTAATTAATAT
TTTTTAGTACGCCCATTCTTTATTTCGAGTACCCTCATAGGAGCCCTCCC
CCCCCCGCTTTAAAACAATATCATTGTAGTGGACAAATACCTCTTTCCAT
TCCCATCGCAAAATTCATCCCGACTGAGACTGGTAATTGGCAACCTTATT
ACTTGGGAGAAAATGCTCTGAAAATGGCATTCTCAGCTTCAGCAGCCAAA
CTCCATGATGGTGATATTCTTAGCATATTCTTAATTTTTTGTCCAATTTC
ATCATGAACATTCTTATAAAGTAGGTTCTTACAAAGAAAAGCGTGAATTG
TCATCTTTTAGTAATATTCAACTCTTTCTTATTAGATTCTATCACAACGT
TGCTTCTCGATCACATCAAGGGAAACAATCAGCAAGCTCTAACCTATCTT
CTTATTAAATACAGCAAGGAAGTAAACAAAACTGATCTCATAATTTTGTT
TACCAAAGCTCTTAGATTGTGCACACATAATGAAATACACGTTGCTATTC
CTATACTACTACATTACCATCCTGAACTACTGGATATTGAGTTACCAGAG
TTTCAAAACACTAAACCAGTATGTGCTGCTCTATCTAAAGGGAATATAAT
CTTGTTCAAATACTTGTTAGACCATAGTAATCAAATTGATTTGGGAAATG
TTAATGTTGACATGTTTCAAGGACTGAAAGGCG

Coding sequence (CDS) from alignment at sc0000182_pilon:516060..518292-

>MSTRG.17744.3.p1 ID=MSTRG.17744.3.p1|Name=MSTRG.17744.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1536bp|location=Sequence derived from alignment at sc0000182_pilon:516060..518292- (Clytia hemisphaerica_ch_hm2_pilon)
ACCATAGTAATCAAATTGATTTGGGAAATGTTAATGTTGACATGTTTCAA
GGACTGAAAGGCGTGGTCAAAATATGATCGTAATGACAATCAACAAAATA
GCGAACTAACAAAGAAGTGTCAGACTTTGAAGAAAATGAATTGCAACTTA
CTCCTATAAAACCGTCGAGCAGTCTAGCCTGTTGTCACATACAAAAAGCT
GTAGGTTGATGCAGAAAGAAGCAGAAGACAATGTCATGACATTACAAGGT
CGTAAAATCAAATGTTCTGAAGCTTATGAGAGGCTCTTGGAAAGTCGTGA
CTCAGTTACCAATGCAAATAAATTGATTGGGAAGTACAATCAAGAAATTG
AAAATTTGACTGGGAAATTGAAAATACTCAAACCACCATAGTAATCAAAT
TGATTTGGGAAATGTTAATGTTGACATGTTTCAAGGACTGAAAGGCGTGG
TCAAAATATGATCGTAATGACAATCAACAAAATAGCGAACTAACAAAGAA
GTGTCAGACTTTGAAGAAAATGAATTGCAACTTACTCCTATAAAACCGTC
GAGCAGTCTAGCCTGTTGTCACATACAAAAAGCTGTAGGTTGATGCAGAA
AGAAGCAGAAGACAATGTCATGACATTACAAGGTCGTAAAATCAAATGTT
CTGAAGCTTATGAGAGGCTCTTGGAAAGTCGTGACTCAGTTACCAATGCA
AATAAATTGATTGGGAAGTACAATCAAGAAATTGAAAATTTGACTGGGAA
ATTGAAAATACTCAAACCACCATAGTAATCAAATTGATTTGGGAAATGTT
AATGTTGACATGTTTCAAGGACTGAAAGGCGTGGTCAAAATATGATCGTA
ATGACAATCAACAAAATAGCGAACTAACAAAGAAGTGTCAGACTTTGAAG
AAAATGAATTGCAACTTACTCCTATAAAACCGTCGAGCAGTCTAGCCTGT
TGTCACATACAAAAAGCTGTAGGTTGATGCAGAAAGAAGCAGAAGACAAT
GTCATGACATTACAAGGTCGTAAAATCAAATGTTCTGAAGCTTATGAGAG
GCTCTTGGAAAGTCGTGACTCAGTTACCAATGCAAATAAATTGATTGGGA
AGTACAATCAAGAAATTGAAAATTTGACTGGGAAATTGAAAATACTCAAA
CCACCATAGTAATCAAATTGATTTGGGAAATGTTAATGTTGACATGTTTC
AAGGACTGAAAGGCGTGGTCAAAATATGATCGTAATGACAATCAACAAAA
TAGCGAACTAACAAAGAAGTGTCAGACTTTGAAGAAAATGAATTGCAACT
TACTCCTATAAAACCGTCGAGCAGTCTAGCCTGTTGTCACATACAAAAAG
CTGTAGGTTGATGCAGAAAGAAGCAGAAGACAATGTCATGACATTACAAG
GTCGTAAAATCAAATGTTCTGAAGCTTATGAGAGGCTCTTGGAAAGTCGT
GACTCAGTTACCAATGCAAATAAATTGATTGGGAAGTACAATCAAGAAAT
TGAAAATTTGACTGGGAAATTGAAAATACTCAAACC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17744MSTRG.17744Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17744.3.p1.exon4MSTRG.17744.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17744.3.p1.exon3MSTRG.17744.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17744.3.p1.exon2MSTRG.17744.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17744.3.p1.exon1MSTRG.17744.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17744.3.p1MSTRG.17744.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000182_pilongenomesc0000182_pilon:516060..518292 -