MSTRG.17744.1.p1 (mRNA) -

Overview
NameMSTRG.17744.1.p1
Unique NameMSTRG.17744.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000182_pilon:515341..519001-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17744.1.p1 ID=MSTRG.17744.1.p1|Name=MSTRG.17744.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3661bp|location=Sequence derived from alignment at sc0000182_pilon:515341..519001- (Clytia hemisphaerica_ch_hm2_pilon)
TTTCTTTAGGTGAATAAAAAACAATTCAAATTAAATCAAATTGAAAAGAA
AAATCTACAAAACAAAATGGCTGAGGTTGAAAATGAGAAAATGGACAGTT
GTCCCTTTTGCCTCTGTAGGAAAAAGGTAATCAGTAGCGGTCTACTTGAA
TTTCACTAGTGGTGCCCTCTCTTTCTTTTTGTTTTGTTTTACTTCCTCGG
TTATTTGTAATTATTACCATGTTATAGGCTAAGGTGATTTGATATCTTCC
TTTTAATAACCTATTTTTCATGATATCTGATGTACACGTTTTTTCATAAG
AACAAACTATATATGAACATAATGTTTCAATTGGCCAAAATGTTTTAAGA
ACATTTTAAGGATTTTGCAGACTCTAAAACACCCAATTTCATAGGAAAAT
GAACAAAAATGCTCAAAAAATGGTGAAAATAAGAACGTGCTAAGAACAAT
TTTTAGGTATAAAACTCGAAAAGTTAAGAACATCCGAAGGGTTAAAAATT
TTTGGATGTTTTTACAAAAAAAAAAGCGGTCTACTTGAATTTCACTAGAG
GTAACTCCCGTTTTTTGTGTTTTACCACATTGGTTATTGGTATTAATTAC
CGTGGTATAGGCTAGGGTGATTTGAGATCTTCATTTAATGACCTAATTTT
CATGGTATCTGATATACAGCATACCTAGTGTTGCGTGTATTTCTTCTTTT
TTATCATAGGTCGAGCAGTCTAGCCTGTTGTCACATACAAAAAGCTGTAG
GTTGATGCAGAAAGAAGCAGAAGACAATGTCATGACATTACAAGGTCGTA
AAATCAAATGTTCTGAAGCTTATGAGAGGCTCTTGGAAAGTCGTGACTCA
GTTACCAATGCAAATAAATTGATTGGGAAGTACAATCAAGAAATTGAAAA
TTTGACTGGGAAATTGAAAATACTCAAACCGTGTGTAAAATTATTTTTAC
TCTAAGAAACTTTCTGATACATTAAATTTTAGAAGATTCCAACTAGCACA
TAACGTTCTTTCAACGTTCGTCTAACGTTAAATGGACGTTGTGAACACAA
GATAAACGTTGAAAGAACTTTGTGAGATTCATATTATCTCATGATATTAT
GATTTCATCCGTATGTTTGTGATTTAATTTTCAGAACTAACAAAGAAGTG
TCAGACTTTGAAGAAAATGAATTGCAACTTACTCCTATAAAACCGTGAGT
GTTAATAGGCGTTAGGCCATCTTTTTATAAAGAGTCGTTAGAGTGTAATC
CACTCCCACCCGAGTATTAGCAATGGGCTTTTCAAGAAAAAATTGAATAT
GGGGGTGGAAGATGTAATATTTTTGGAAATTTACCACCCGGACATTGTGA
CTTTTGACCCCCCCCCCCGACAGCAGATCTACCCCCCCGTACAAGCATCA
GTTGACCCCCCTGGACATTTGAAATTACCCTAAAACTCTGCAAAAAGTGT
CCCCAAACAGAGCAAGTTTACCCCCCCTGGACAAGGAGAATTTTGTAGAT
TTTTCACTACCCCCCCAGACACTATATCTTCTACCCACACTATATACAGA
CATTTCTTGGAAGAGCCCAATGTGAAATTTGTGAGATCGAAACCCATTCG
AATCGTTTCGCACTTCCCGTAAGTGTATATTCCAACATATATAGGGGGAT
TTTTAAAGAAAGAAAATTCCTTTTTATTATAGAGCACCTGCTGTTTACTT
CGTACATTACGGTCCGAAAACCATATTGTCAAATTTTGTTTGTCAATATA
TTGTGTAGTCTAAGTAGCCCTTTAGGAACCAATTCATTTGTATGACCAGG
TCGGGACTTGACCGACAACCTTGCCCACCGGGACCGAATGTAGTTCTTCC
AATACTGTGTTTAAAAGCTAAGGAAAAACATATGTTTTATTCTATTTATT
CGTCCATCAGGTGGTCAAAATATGATCGTAATGACAATCAACAAAATAGC
GGTTTGTTTTAAATATAATTTCATTCATTGATTATTTATCATATGTATTG
GTTCTTTGAAACTTACCTTAAATGAATTAATTTACACGAGAATTATATTT
TGCGAGTTTCCCAAAATTCGTGAAATTCGCGAAATTTGATTCTCGTAAAA
TCTTTCAAACCTGAATTCTTCCCAAAAACCAATTTTTTGCCAAAACCCCT
AAGAAAATTATAGATATTAGTTGAAAAAGAGGCCGATTCGCGAAAATAAA
TCCCACAGAAAATTTTTTTTGAAAAAAAATTATCTCGCAAATATTGAGGT
AATTAATATTTTTTAGTACGCCCATTCTTTATTTCGAGTACCCTCATAGG
AGCCCTCCCCCCCCCGCTTTAAAACAATATCATTGTAGTGGACAAATACC
TCTTTCCATTCCCATCGCAAAATTCATCCCGACTGAGACTGGTAATTGGC
AACCTTATTACTTGGGAGAAAATGCTCTGAAAATGGCATTCTCAGCTTCA
GCAGCCAAACTCCATGATGGTGATATTCTTAGCATATTCTTAATTTTTTG
TCCAATTTCATCATGAACATTCTTATAAAGTAGGTTCTTACAAAGAAAAG
CGTGAATTGTCATCTTTTAGTAATATTCAACTCTTTCTTATTAGATTCTA
TCACAACGTTGCTTCTCGATCACATCAAGGGAAACAATCAGCAAGCTCTA
ACCTATCTTCTTATTAAATACAGCAAGGAAGTAAACAAAACTGATCTCAT
AATTTTGTTTACCAAAGCTCTTAGATTGTGCACACATAATGAAATACACG
TTGCTATTCCTATACTACTACATTACCATCCTGAACTACTGGATATTGAG
TTACCAGAGTTTCAAAACACTAAACCAGTATGTGCTGCTCTATCTAAAGG
GAATATAATCTTGTTCAAATACTTGTTAGACCATAGTAATCAAATTGATT
TGGGAAATGTTAATGTTGACATGTTTCAAGGACTGAAAGGCGACGAGAAG
AAAATGGTTAAGAAATTGCTGAAAAAGAAAAGGTGAGAAATTTCCTCTTT
TGGTTAAACACGTAGGAAAATTACAGAGACTAGTTCACAGGGGATGCATT
TTAGGTACCTTTGAGTAGGTGATTTAAACATTGAATTTCAAATGGGGATG
AAGTTAAAGTCAATTACTCAGTGGGGCTGAAATTGGAGGGTATTATTCCC
ACTGAAAACGAAATTTTGGCCAAATTTTCCAGTGGGGCTGGGTCCCAGCG
GGTCTGTGACACATGGGTGTGAAAAGCAATTTGCAGCAGCCTACAGCCTC
ATCCCCAGCCTATTTATCTTCACTCTACTTCACTCTATGTTAGCTGATGA
TGCCAGATACTACCCTGGCACTGTCTAACTTCCAACAACAATAATGTAAC
AAAACCTAGGAAGTTGAGCTAAGTCAGCCTATTCGGAATTTGAAATATTG
TTTATCATTTTTTAGGAAACTATGTGGCGATACTAAAAGTTAGCCTAACA
GGAGAGATCAATTATATACACAAATTATTGGCTACTTGAAGAACGCATAT
TTTTCAAATAATTTATCATAACGCATTTACAGATATTTAAAGTTAGCTTT
TCTTCAGTACTAGGAATAATAAAACTATGTTATTCTTTTCTCTTGTCATG
CATTTTTATTTCATTACCCTTAGCACCATAGGTATAAAACGTGAGCCTTC
CAAATTTAACC

Coding sequence (CDS) from alignment at sc0000182_pilon:515341..519001-

>MSTRG.17744.1.p1 ID=MSTRG.17744.1.p1|Name=MSTRG.17744.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3870bp|location=Sequence derived from alignment at sc0000182_pilon:515341..519001- (Clytia hemisphaerica_ch_hm2_pilon)
ATTCTATCACAACGTTGCTTCTCGATCACATCAAGGGAAACAATCAGCAA
GCTCTAACCTATCTTCTTATTAAATACAGCAAGGAAGTAAACAAAACTGA
TCTCATAATTTTGTTTACCAAAGCTCTTAGATTGTGCACACATAATGAAA
TACACGTTGCTATTCCTATACTACTACATTACCATCCTGAACTACTGGAT
ATTGAGTTACCAGAGTTTCAAAACACTAAACCAGTATGTGCTGCTCTATC
TAAAGGGAATATAATCTTGTTCAAATACTTGTTAGACCATAGTAATCAAA
TTGATTTGGGAAATGTTAATGTTGACATGTTTCAAGGACTGAAAGGCGAC
GAGAAGAAAATGGTTAAGAAATTGCTGAAAAAGAAAAGGTGAGTGGTCAA
AATATGATCGTAATGACAATCAACAAAATAGCGAACTAACAAAGAAGTGT
CAGACTTTGAAGAAAATGAATTGCAACTTACTCCTATAAAACCGTCGAGC
AGTCTAGCCTGTTGTCACATACAAAAAGCTGTAGGTTGATGCAGAAAGAA
GCAGAAGACAATGTCATGACATTACAAGGTCGTAAAATCAAATGTTCTGA
AGCTTATGAGAGGCTCTTGGAAAGTCGTGACTCAGTTACCAATGCAAATA
AATTGATTGGGAAGTACAATCAAGAAATTGAAAATTTGACTGGGAAATTG
AAAATACTCAAACCATGGCTGAGGTTGAAAATGAGAAAATGGACAGTTGT
CCCTTTTGCCTCTGTAGGAAAAAGATTCTATCACAACGTTGCTTCTCGAT
CACATCAAGGGAAACAATCAGCAAGCTCTAACCTATCTTCTTATTAAATA
CAGCAAGGAAGTAAACAAAACTGATCTCATAATTTTGTTTACCAAAGCTC
TTAGATTGTGCACACATAATGAAATACACGTTGCTATTCCTATACTACTA
CATTACCATCCTGAACTACTGGATATTGAGTTACCAGAGTTTCAAAACAC
TAAACCAGTATGTGCTGCTCTATCTAAAGGGAATATAATCTTGTTCAAAT
ACTTGTTAGACCATAGTAATCAAATTGATTTGGGAAATGTTAATGTTGAC
ATGTTTCAAGGACTGAAAGGCGACGAGAAGAAAATGGTTAAGAAATTGCT
GAAAAAGAAAAGGTGAGTGGTCAAAATATGATCGTAATGACAATCAACAA
AATAGCGAACTAACAAAGAAGTGTCAGACTTTGAAGAAAATGAATTGCAA
CTTACTCCTATAAAACCGTCGAGCAGTCTAGCCTGTTGTCACATACAAAA
AGCTGTAGGTTGATGCAGAAAGAAGCAGAAGACAATGTCATGACATTACA
AGGTCGTAAAATCAAATGTTCTGAAGCTTATGAGAGGCTCTTGGAAAGTC
GTGACTCAGTTACCAATGCAAATAAATTGATTGGGAAGTACAATCAAGAA
ATTGAAAATTTGACTGGGAAATTGAAAATACTCAAACCATGGCTGAGGTT
GAAAATGAGAAAATGGACAGTTGTCCCTTTTGCCTCTGTAGGAAAAAGAT
TCTATCACAACGTTGCTTCTCGATCACATCAAGGGAAACAATCAGCAAGC
TCTAACCTATCTTCTTATTAAATACAGCAAGGAAGTAAACAAAACTGATC
TCATAATTTTGTTTACCAAAGCTCTTAGATTGTGCACACATAATGAAATA
CACGTTGCTATTCCTATACTACTACATTACCATCCTGAACTACTGGATAT
TGAGTTACCAGAGTTTCAAAACACTAAACCAGTATGTGCTGCTCTATCTA
AAGGGAATATAATCTTGTTCAAATACTTGTTAGACCATAGTAATCAAATT
GATTTGGGAAATGTTAATGTTGACATGTTTCAAGGACTGAAAGGCGACGA
GAAGAAAATGGTTAAGAAATTGCTGAAAAAGAAAAGGTGAGTGGTCAAAA
TATGATCGTAATGACAATCAACAAAATAGCGAACTAACAAAGAAGTGTCA
GACTTTGAAGAAAATGAATTGCAACTTACTCCTATAAAACCGTCGAGCAG
TCTAGCCTGTTGTCACATACAAAAAGCTGTAGGTTGATGCAGAAAGAAGC
AGAAGACAATGTCATGACATTACAAGGTCGTAAAATCAAATGTTCTGAAG
CTTATGAGAGGCTCTTGGAAAGTCGTGACTCAGTTACCAATGCAAATAAA
TTGATTGGGAAGTACAATCAAGAAATTGAAAATTTGACTGGGAAATTGAA
AATACTCAAACCATGGCTGAGGTTGAAAATGAGAAAATGGACAGTTGTCC
CTTTTGCCTCTGTAGGAAAAAGATTCTATCACAACGTTGCTTCTCGATCA
CATCAAGGGAAACAATCAGCAAGCTCTAACCTATCTTCTTATTAAATACA
GCAAGGAAGTAAACAAAACTGATCTCATAATTTTGTTTACCAAAGCTCTT
AGATTGTGCACACATAATGAAATACACGTTGCTATTCCTATACTACTACA
TTACCATCCTGAACTACTGGATATTGAGTTACCAGAGTTTCAAAACACTA
AACCAGTATGTGCTGCTCTATCTAAAGGGAATATAATCTTGTTCAAATAC
TTGTTAGACCATAGTAATCAAATTGATTTGGGAAATGTTAATGTTGACAT
GTTTCAAGGACTGAAAGGCGACGAGAAGAAAATGGTTAAGAAATTGCTGA
AAAAGAAAAGGTGAGTGGTCAAAATATGATCGTAATGACAATCAACAAAA
TAGCGAACTAACAAAGAAGTGTCAGACTTTGAAGAAAATGAATTGCAACT
TACTCCTATAAAACCGTCGAGCAGTCTAGCCTGTTGTCACATACAAAAAG
CTGTAGGTTGATGCAGAAAGAAGCAGAAGACAATGTCATGACATTACAAG
GTCGTAAAATCAAATGTTCTGAAGCTTATGAGAGGCTCTTGGAAAGTCGT
GACTCAGTTACCAATGCAAATAAATTGATTGGGAAGTACAATCAAGAAAT
TGAAAATTTGACTGGGAAATTGAAAATACTCAAACCATGGCTGAGGTTGA
AAATGAGAAAATGGACAGTTGTCCCTTTTGCCTCTGTAGGAAAAAGATTC
TATCACAACGTTGCTTCTCGATCACATCAAGGGAAACAATCAGCAAGCTC
TAACCTATCTTCTTATTAAATACAGCAAGGAAGTAAACAAAACTGATCTC
ATAATTTTGTTTACCAAAGCTCTTAGATTGTGCACACATAATGAAATACA
CGTTGCTATTCCTATACTACTACATTACCATCCTGAACTACTGGATATTG
AGTTACCAGAGTTTCAAAACACTAAACCAGTATGTGCTGCTCTATCTAAA
GGGAATATAATCTTGTTCAAATACTTGTTAGACCATAGTAATCAAATTGA
TTTGGGAAATGTTAATGTTGACATGTTTCAAGGACTGAAAGGCGACGAGA
AGAAAATGGTTAAGAAATTGCTGAAAAAGAAAAGGTGAGTGGTCAAAATA
TGATCGTAATGACAATCAACAAAATAGCGAACTAACAAAGAAGTGTCAGA
CTTTGAAGAAAATGAATTGCAACTTACTCCTATAAAACCGTCGAGCAGTC
TAGCCTGTTGTCACATACAAAAAGCTGTAGGTTGATGCAGAAAGAAGCAG
AAGACAATGTCATGACATTACAAGGTCGTAAAATCAAATGTTCTGAAGCT
TATGAGAGGCTCTTGGAAAGTCGTGACTCAGTTACCAATGCAAATAAATT
GATTGGGAAGTACAATCAAGAAATTGAAAATTTGACTGGGAAATTGAAAA
TACTCAAACCATGGCTGAGGTTGAAAATGAGAAAATGGACAGTTGTCCCT
TTTGCCTCTGTAGGAAAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17744MSTRG.17744Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17744.1.p1MSTRG.17744.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17744.1.p1.exon5MSTRG.17744.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17744.1.p1.exon4MSTRG.17744.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17744.1.p1.exon3MSTRG.17744.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17744.1.p1.exon2MSTRG.17744.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17744.1.p1.exon1MSTRG.17744.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000182_pilongenomesc0000182_pilon:515341..519001 -