MSTRG.17729.4.p1 (mRNA) -

Overview
NameMSTRG.17729.4.p1
Unique NameMSTRG.17729.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000182_pilon:302788..309534+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17729.4.p1 ID=MSTRG.17729.4.p1|Name=MSTRG.17729.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6747bp|location=Sequence derived from alignment at sc0000182_pilon:302788..309534+ (Clytia hemisphaerica_ch_hm2_pilon)
CAGAGATGataatttgttggtttttgagCGAATAAATTGCGAAGAATTAC GTTTTTCATCTGCTATGTGGCGacatttaaaaacttttgagattgatgag atagagcatgttgcattgcatcgACATAGAAAGATGGTATGTCATGATGC aaaaaaaGAGAGCATTTTTTAGGAATTTTGGTTGCTCTTATGCTTTCTAA TGTATCTTGTTTCACCAATAATGTTATCCTCTGCATATATGGCCCCCATA TAAGGAGATCGTAAATTTacttaacaaacaaaaattaattacaCATTTTT AGGGGAAAAATGTGGGGTATGATTGGGTCAGTATATTCTGTGTTGATCAA GTTTAACCGAAATCCCATCTCAACGTGACGCCTTTTGGCCAATAATATTG CAGAATAACTTGGGAAGAAATTTCAGTGAGAAGAAATCAATGTAAATTTT TTGGTCATTCGCCTAATTAATTATCGCCAAatcattttaaattaatttta agttcaaatttatccttaaaaacaccgttaggcaaaaataggtactgggt atgtgcggacggcaagattcggttttttcaccttcgATAGTGTCTTTAAG GGTTACGAaaatttttcagtaaaaatcagtccctcTAATAAGTGTctaat ttctcaaaaagatTTCGCCTAATTGTATGTAAATGGACATATTTGACTCA TTCACTAAAATTTCTTCTCactgaaatttcttcttttaaaataaTCGATG TGGGCTGATCTTCCCAGCTGgcccacaacgttgtttcaacatttatctaa tgttcataacgtccatataacgttagatgaacgttgaaacaacgttgtgt gtcagctgggttgtACTATTTTGTAATCATCCTTTAAAAACACGTCATGG ACgaccaaagtttgaaaaataatcCATATGGATCCCACATCGGATTGATC TATATTGAACCCATTTCTCACTAGCACACTAATTCAAGTGTTAAATTTCG ATTACACTATCTCGTACAATTCATTTGTTGAAGCGTTGGCTCCAAAAGCG TGAACTCCAACATTCGTGAAAGAAGTTATTACAAAAATATGACACCCTGC TCAATGATTTTCAAGACTGTTAATCAGATTGTGACATTTTAAAcccaatt tctatttttcaggGGTACTACTAACATGATGTTTGAATCGATTTAGGCTA GTGAGACAGGATCTTAAATCGCTAGTCAAATTCACATGACTTCactcatt ttcttttataagaacaacttataagaacaatgaggctcataATTGCCAGA TACAAGAATAATTTATGAACAATGCTGGGCccgaaattactcaatttcaa gcaatttaggggtcaaagtagtaaaaattgggtaaaaagcctgaatataa ataagaacaggataagaacaatttgattcTCAAAGTGCCAAAACATTAAG AACTTTTActggttctcataaaaaagaaagagtgtATTTGAGGTTTTGTT TCCTTTGGCCCATATAGTCAAATTCACTCTCTGTGAAATGCGGCTTCTTT TGGTAAGTCATTCAGTCGTGATTTTATGTATGTTAGACTTATCACCTTAA TCTTTGAAGTCTGTCCTGTGAAAGTAATATCCTCTGGTGTCGAGTGCTTA GATATCCTTATATGATTAAATATTTGGTCCTTTGAGTTTGTTTAGAAAGA TTTCACCATTTACGGACCTTCCAATTAAAGAATTAACACTTTATTTTAGG GACTTTAAATGTGTCTGATAAACGCCTGTgagtttttgaatttgtttaaa CTTTTGCCAAAACCTTTTCTAACTTTATCTTTAAGCAACCGTTTCTTCGG GATGGTGACTTAGAGATCTTCTCGACATCTTAAATACAATTCATTATCGC CTAGTCGTTTCCCAGGCGTTAAATTTTAGTTCAGTTTTTGTTTGGCTGCT TCAAAATTCAGAATTTTCTACTATTCGTTTATGAAAATATGGACTACAGC ACCATccgttttttgtattttcttaaaaaattttaaattcaaaatcgtTT ACAGGCTCATACTTACTTCctctttgttttctctgagATAACTGGACTTT ATTACAAGCTCGTGATTCTATTGGATAATCAACAAACAGAATCTGAATCT TTCCAAGCACAAGAGACCTTAGAGAAAGGTTCTGAGTAAACAGTCTTGAA acacaaaatcttttaaaagaaccCGAACtgttaaaatgattttatttatg CATTTCTGGGGATTGGAGAACTAGAATGGAAAGAATAGCAGAACTTTACG AATTTATAGATATAATTGGAGGTGGAAAACAGAGTTCAAAGACTAAACGC AAAGCAAGTTTGTTAATAAAGTCAAGTCCATCCATAACTTGAACGCGCAc gttgggggtccttcaaagttcctcagaGTGCCGTCAAAAACCGGCAAAAA TTGCCAGAAATGACCTCCTCAATTGGGAACACAAACttgtttgaattaag gaaattttgagttatggagtaggCTCACAAggcatttttaagaaaaatta ttcgaGTTATCGAGCCATTCGAATTAACTGGTTAATTAATTGGTTTTGCA ACAAAAGGCGCGTCATAACAGAGGCTCGAAtaatggagactccactgtaa cagaaatctaaaatcttacaaaacttactacattattttttgaattttgt atgTATTTAGGTGACCCAaccctttttgttttttaaacagTTTAGACAGA GGCTTGCTGTTAAAACTGACATAACATGCATAATTAACTGAAGTCTGATA AAAGTTCCTTAAAAAGTAGGCCTAAAACGGCCAAAAGTGACTAAAAACAA TGCTGTAATTTTTTATCGAACTatacgaaaaatctgaacacagatttgaa atcagcaaggttcacagtagaaaaaatcttaattttttaaaaacttctaT CTATTCGGTTATTCTTCTTggtaatatctttccaacggtgtatagcTTTT TTGTACGTATAGAATGAATACCTACtgcaaaattgttaaaaagtaaaatg tccacatacttttgagacaggcttagacgatgctatcgtccgtttaaagg tcagtaaacgcgggaaaaagttcgggcgtcagggcggtttacgggaaaaa agtggcggtagagttttggaacactgtaaacatctccgccactgcttact ccacccaaatttatcacgcctctcctaaactattcccttttttagtgatc gataggatcgtctaagacagactttaattgaatctttcaatcttcatttt cttcagaaATCGTATTCGACAAACACACTGACACGAGCTGATTCTaccga agaagaaaatgaatgcAAAACTTATGAAGGTTGGTTGTTTTCAGaggata tacacgttttttttgaattagaataaattgtataagaacataaggctcga tggtcaaaataattGGAACAAAACAAGATCATTCTAACCCTTCGAGcttc ttcctatttttttactaggggaagcatattgccccccccttaaaatctGA AGAACGACAAGtgctatgaacttgaaattttgaccagtggtaGATATGGA TTATTGGAGCTTTTTTAACCAGGCATCGAGAATAGTTCGCCATTTGgcta ttaaattcaaaatttaatgaatctGCGATCATGtcagatttttataagaa caaactgttaGAAATGAAATGCTCAGAAATGCTCAGAACtagctaagaac attttgaggcttagCGCATTTTTAAACACCCAAGTTCTTTAATAGGCCCA GAAATACTCACAACATGGTGaacataagaacattttaagaacattttaag cttaaagtttaaaagttacgaacattcgaaggctacaaaaattttggacg ttcttatagaaaaaaattatttacaagtTTCAAAAAGGGATCCTAACAAG TCAAGGCAAGTCCTTCGACTTAAATTTTACTAGAGTCAGTCCCACCATTT GTGCGAGTTTAGAAACTGATACAAATTGTCATACCGCGAACACCTTATTT TAGCTCCCTCTGAAATTTAACCTGTGGCGACCTACTATtagaattttatc gcgcatgtctcAATTATATTGCTTTTTAGCCTCGATTTCCAGACCATTAT TCTTATTACGCAAAATAGGGGCAATGTCTGCCATaaaaaaaaCCGCGCGA GAGagtgttttgaatattttttcctcttttgaagAGCCCACTTCTTTTTT GCAGTACGGTGTACCTTTTAGTGTTTGATAATTAGGTGAAGCTGATTATT GACCTGGAATTATAAATTATTAGTCTAGATCTAGACTAATTACTATTCAA AAATTCGAAGGTGGAGAGTATATCCATGTTAAGCTTGAACGacttccggg gggggggtactaggtttgcaatGTCcgagtcaaaatttgaaaatcgaccC ATAGAGAGACAGAATTTTTccacaaaatttcagccaaaatttgtaaattg taGACCAATTTTCAAGAacttatgaccctttgagggagtcgaTTTTTGAT CAGAGACtgaattgctttttaatgattttcgtACCCCTTTGAgtgtgtga aaaagggacccttatttCCCGGAACGACTTAAACAGACTATATGTAATTA CATATTTCCAGTTTTAAAATTCTTCTGGGACTTATATCAGTGAAATGAAA TCTCCTTTCTATCAGCCAAAATTTACGTGACAATGATTACCAATTCATTA TCAAATTATCAATTCCCCGAAGTTACTTTAATATCGATTCCTAATTATGT TTTGAGCTAGTTGTCTTTCATTGAATCTTTTCTACGTTTCTAACTCGTGA TTTGATTGGTAAGGCTTCATTCAAGATTCTGGCTAATTGCCATGACTACT AAGAAcatctttttgagtttttagcctaaaaatgttcttatcgtgttctt attttcaccattttgtaagaatttttgtcccacttcctaagaaattgggt taTTTAGAGTACGTAAAGCCTTGTGGTCAATATTTCGGTCATCgaatcct tatgttcttatatagtttgatcTTATAGATAAAACGTGTAGAATAGAATC CTTATTTGTCGTCACAGTGTAATATTCATACACTGTGACACTCCTCACTA GTAGCCTGGTAGacaaaaaccgcttttttatcgtgatttaaaacaaagaa aaatttggtttgtgggaaggcactGGCTAACTCACTAGTGAATCTACTTT TacgtaaagtttttttacaacCGTCTTTTCCTTGGCAAGATCCCGTAAAA CTTGACCTGCTACAATCATATGTGTGTTCTTGTACAGAAATTCGATATTC TGATGAAAACTCCTTGAAAAAACACTCTAGAAATCAAACAAACTTACCAA TATCAGAATCACAAGAGGTCTAGATCAATAATGTCATTTTTTGGCCGAAG GGCCAACaaaaaaaaGCTCATTACAATTTTCAGACAGAGAGGTTGAACAA GAATTTGTCATAATCATAGTTTTGGAGTTGAAGTTTGTGTTTGGTAATAT CGGATTTccggatttttctttttttcttagaatCGTTTTTTGTGGTTCGA GAATTTTTATACCTCGTGATAATCGTATCACttgccaaaatttcttatta ACCTAGGGTGTATTCACTTGAAGTTTGCTTAAAATACAATCACGTGATCG TGCAAACTTAGACAATAAGAGACAAAGGTGAAGTTTGTGCAATTCTTTGT TCccatattttcaaaacttcaaGCAACAGTGTACACCCCTATTTCAGAAG Gtgttattttcgatttttcgattttctcctgtgttgctgttgtttttgtt gagaaatgaaattatttttttcaaaaaaacgtaAGCGTGTAGCCCATCTT TTTTCAGCCGCAATTTATATGAATAGTTTTAGGCTATTCAGCGTTATACA TTAATCCTATTAATCCTGTTAACCTAAGCCgtcagtggaaaaacacccaT AGGATTCGTGTATCTGttacatgctattttctattcaatttaaagGGGAA ATTGCATGATGTGTGCAGATTTCCCTtcgaaaaaaacattgaaaaaaatt gatttccaTTATTTAAATGACTTTGGGATTCATGAACTCTTCTCTATTGC TAACGTAGAAAAATATCATGTTGAAATAGGCTAATATTGAAAATGGACTT TTTCTCCCCTCATAGGTATCACATTATGCGTGTATCGTCTGGAACCAGAA ATCACGAAAGAACAGTTGAAAGAAGTCTTCTCTAAATTCGGACACGTTTT AAAATGTACCGTAACAGAAGAATGTTCCGGACCTCTACCCTACCGCATCG GAAGCATCGCGTATTATTCCCCACTAGAAGCACAACAAGCTATTCGATAT ATGAACGGTAAAGCTATCATTCAAAACAACATTTATGTTGGTTTACAGAC ACGGAAAAAAGAGAGGCGACGATCATCAAGAACTAGCCCGCCACCTTCGG CATTGCTTCTCCCGCCCCCGAAAGAGGgcgttgaaattgaaaatcggACT GAAAGATCTTTTAGTGAATCAGTAACGACAAGTGGTAGTGGTGGTCAGAG TGTGGGTGAAAAATTGATTCAATTTAAAAGACTTTGTCGCACGAGGTCGT TGAACACCAGTGCTTTGGATACTCACTcttaattcaaatattttttaaac atacaGTGTGTCATGAAAAAGCGgacacatttttatataaagtaaaa

Coding sequence (CDS) from alignment at sc0000182_pilon:302788..309534+

>MSTRG.17729.4.p1 ID=MSTRG.17729.4.p1|Name=MSTRG.17729.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2025bp|location=Sequence derived from alignment at sc0000182_pilon:302788..309534+ (Clytia hemisphaerica_ch_hm2_pilon)
AGAGATGataatttgttggtttttgagCGAATAAATTGCGAAGAATTACG
TTTTTCATCTGCTATGTGGCGacatttaaaaacttttgagattgatgaga
tagagcatgttgcattgcatcgACATAGAAAGATGaaATCGTATTCGACA
AACACACTGACACGAGCTGATTCTaccgaagaagaaaatgaatgcAAAAC
TTATGAAGGTATCACATTATGCGTGTATCGTCTGGAACCAGAAATCACGA
AAGAACAGTTGAAAGAAGTCTTCTCTAAATTCGGACACGTTTTAAAATGT
ACCGTAACAGAAGAATGTTCCGGACCTCTACCCTACCGCATCGGAAGCAT
CGCGTATTATTCCCCACTAGAAGCACAACAAGCTATTCGATATATGAACG
GTAAAGCTATCATTCAAAACAACATTTATGTTGGTTTACAGACACGGAAA
AAAGAGAGGCGACGATCATCAAGAACTAGCCCGCCACCTTCGGCATTGCT
TCTCCCGCCCCCGAAAGAGGgcgttgaaattgaaaatcggACTGAAAGAT
CTTTTAGTGAATCAGTAACGACAAGTGGTAGTGGTGGTCAGAGTGTGGGT
GAAAAATTGATTCAATTTAAAAGACTTTGTCGCACGAGGTCGTTGAACAC
CAGTGCTTTGGATACTCACTcttaaAGAGATGataatttgttggtttttg
agCGAATAAATTGCGAAGAATTACGTTTTTCATCTGCTATGTGGCGacat
ttaaaaacttttgagattgatgagatagagcatgttgcattgcatcgACA
TAGAAAGATGaaATCGTATTCGACAAACACACTGACACGAGCTGATTCTa
ccgaagaagaaaatgaatgcAAAACTTATGAAGGTATCACATTATGCGTG
TATCGTCTGGAACCAGAAATCACGAAAGAACAGTTGAAAGAAGTCTTCTC
TAAATTCGGACACGTTTTAAAATGTACCGTAACAGAAGAATGTTCCGGAC
CTCTACCCTACCGCATCGGAAGCATCGCGTATTATTCCCCACTAGAAGCA
CAACAAGCTATTCGATATATGAACGGTAAAGCTATCATTCAAAACAACAT
TTATGTTGGTTTACAGACACGGAAAAAAGAGAGGCGACGATCATCAAGAA
CTAGCCCGCCACCTTCGGCATTGCTTCTCCCGCCCCCGAAAGAGGgcgtt
gaaattgaaaatcggACTGAAAGATCTTTTAGTGAATCAGTAACGACAAG
TGGTAGTGGTGGTCAGAGTGTGGGTGAAAAATTGATTCAATTTAAAAGAC
TTTGTCGCACGAGGTCGTTGAACACCAGTGCTTTGGATACTCACTcttaa
AGAGATGataatttgttggtttttgagCGAATAAATTGCGAAGAATTACG
TTTTTCATCTGCTATGTGGCGacatttaaaaacttttgagattgatgaga
tagagcatgttgcattgcatcgACATAGAAAGATGaaATCGTATTCGACA
AACACACTGACACGAGCTGATTCTaccgaagaagaaaatgaatgcAAAAC
TTATGAAGGTATCACATTATGCGTGTATCGTCTGGAACCAGAAATCACGA
AAGAACAGTTGAAAGAAGTCTTCTCTAAATTCGGACACGTTTTAAAATGT
ACCGTAACAGAAGAATGTTCCGGACCTCTACCCTACCGCATCGGAAGCAT
CGCGTATTATTCCCCACTAGAAGCACAACAAGCTATTCGATATATGAACG
GTAAAGCTATCATTCAAAACAACATTTATGTTGGTTTACAGACACGGAAA
AAAGAGAGGCGACGATCATCAAGAACTAGCCCGCCACCTTCGGCATTGCT
TCTCCCGCCCCCGAAAGAGGgcgttgaaattgaaaatcggACTGAAAGAT
CTTTTAGTGAATCAGTAACGACAAGTGGTAGTGGTGGTCAGAGTGTGGGT
GAAAAATTGATTCAATTTAAAAGACTTTGTCGCACGAGGTCGTTGAACAC
CAGTGCTTTGGATACTCACTcttaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17729MSTRG.17729Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17729.4.p1.exon1MSTRG.17729.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17729.4.p1.exon2MSTRG.17729.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17729.4.p1.exon3MSTRG.17729.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17729.4.p1MSTRG.17729.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000182_pilongenomesc0000182_pilon:302788..309534 +