MSTRG.17727.1.p1 (mRNA) -

Overview
NameMSTRG.17727.1.p1
Unique NameMSTRG.17727.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000182_pilon:258697..260928+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17727.1.p1 ID=MSTRG.17727.1.p1|Name=MSTRG.17727.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2232bp|location=Sequence derived from alignment at sc0000182_pilon:258697..260928+ (Clytia hemisphaerica_ch_hm2_pilon)
CGTGTAATGCTTTATTTATGTTACAACTTGTAGTCCTGGTAGTCTATCCT
ACTTGATGGTGCTACAGATCTTTACGTTTGTTAAACTATACATACCAATG
CCAACAAAGACTGACCAAAATCGGACTTCAGAAACAAAATGAATCAACGA
TTGAACGGAATCACATACTTAATAATcacttttatttattctttcCTAAC
TTTCATCGTCCTGTTACCTGAAGTCAGGAATAAACTCTACTCCAAATGTG
TATGGAGGCTAGATTTCGTATCATGTAACAAACTGTTGGGAGTCGAGGCT
GCATACCGATTAACGTTAACCATGTTTGTTTTTTACGTCACGCTGTCAAT
GGTAACAATAAATTGCCGTGGAAACCAACTTATCGCGTATTGCCAAGATT
CTTGTTTCACGAAACTTATTGTACTCATTTTATCCAACCTTGCTGGCTTC
TTATTTCCTTTCACACGACAAACGATGGAGAGCctatttcacatttttct
gGTCTCCTCTGCATTGTTTTTATTCGTCATGTTTTTCACGTATTTAGACT
GTGCTCATGCGTTTCGCATTATATGGCTTCGCAAGGCTAGACGTTCAGCT
GATGAGCCGACCTGTTATTTATGTACATGGCTATTTCTCATCCATCTCAC
GACTGCATTCTTGTAtgccatttcactggatttGATTCTagcgtttttct
ttttcaacaaattggAACAGTGCTTATCGACGATCGTGTTCTTGGGAATC
AACATTTGTTTATGTCTAATATGTTGCACTATATCTTATTTCCCAAATCT
ACGGCAACGAGAATCGTCAAGCCAAATCGTATTCGCAACGCTTTTTTGTT
CTGTTAGTTACGTCACGTGGATAGCTCTTTCAGACCCTGAAAATGAGCAT
TGTAATATGTATGGAACAATTTTCACTGGATCCATTTTAGAGAGTTCAAC
AAGTTTTCGTTCCTTGGCTTCACTTACTATGTTAATACCAGTCGTTTTGT
ATCAGTGCTTAAAGAAAACAGACACAAGCTCTTATACTCTATCGCTACTT
ATTGAAAACGCTGGTATCAATTTAATCcaatgttttgataattttattgt
TCACATATCAATGGCAACTGCGTCAGCCTTTGTTTTAATGTCTGTTACTA
ACTCATACGAGCCTGTGCTCTCCATAGTCGAAACACTAGGCTCAGCTCCT
AAAAGTTCGGTCGTCTATTTCGAAGGCTATAATCGAATtcgttttttatt
attttgtgcGGTGAGCTCTCTCCTCCCTATATGTTATTTACTCGTGCTAC
TGTACCGTGTTGTTGTGACGCTTGTTCAGAATTGTAAGCAATATAGAGAA
GAACAACGGCGGATGAGAGAGAATGGTGAAACAGCATCAACGGTGGAGAA
CGGAGAGTTTGTTTACATTAGAATCTCCTTCGCGGAGGCTGTTCGTCAAC
TACAGCTCAGTCGAAGAGAATTAGAAGCTCTACCTTACAATCAGAATGAA
ACGACCCTTCAATACCTCTTATTGCAATGTTTTTATATTACGGGTCATGA
TCTAGCTTATTGGCATTTCCCAAGACATATATCGCAGACTTATTTCAAAG
GTCGAAACGGGAGTAACGCTTGTACCGTGATTTCTATGATTGTCGGGCGG
TTTTTTGCCCGTTCTGATCTCGCCTTTCAGAATGATGGTTATTTGAATAC
TGATTGGTTAAATTtgatttacaccgctattgaggaTGGCAATCGTTATT
ATGACACCCTTATCAAGGAGGTTGGTGTTTTAGATTTGAGTATAGAAGAG
GTTTATGAGCGCCTTGGTCCCGCCCTAAATGTGGCGTTGGTTCATCCTTC
ACTACCAATCTCATTTGAAGCAGAAGTCGAGACTGCAACTATCATCTATC
AACTGAAACAACTTTTATTGAAGCGTCAAAAAatggtttgtttgtttatt
cATAAGAAGCGAACTTCATCCTTTCTTATCTATGAAACGGGACAGATGGT
TTACGTGGACTCGCACGCCTTTGGTGAAAATGGCGCACTAATGGTTTCAT
CATCAAGTGAAGATACTCTGCAAAACCTTTTAATATTTCTGAGAGATATT
TTATGTGGCTCAGACAACCAGTTGGCTACACTGACTATCGTAGattatga
aaaacgaaaaactaaagaaaatatGTTTTATAAATAGTGTAAATGTATGA
CCTTATCATTAGAAAATTCTGAtataaaattt

Coding sequence (CDS) from alignment at sc0000182_pilon:258697..260928+

>MSTRG.17727.1.p1 ID=MSTRG.17727.1.p1|Name=MSTRG.17727.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2049bp|location=Sequence derived from alignment at sc0000182_pilon:258697..260928+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATCAACGATTGAACGGAATCACATACTTAATAATcacttttattta
ttctttcCTAACTTTCATCGTCCTGTTACCTGAAGTCAGGAATAAACTCT
ACTCCAAATGTGTATGGAGGCTAGATTTCGTATCATGTAACAAACTGTTG
GGAGTCGAGGCTGCATACCGATTAACGTTAACCATGTTTGTTTTTTACGT
CACGCTGTCAATGGTAACAATAAATTGCCGTGGAAACCAACTTATCGCGT
ATTGCCAAGATTCTTGTTTCACGAAACTTATTGTACTCATTTTATCCAAC
CTTGCTGGCTTCTTATTTCCTTTCACACGACAAACGATGGAGAGCctatt
tcacatttttctgGTCTCCTCTGCATTGTTTTTATTCGTCATGTTTTTCA
CGTATTTAGACTGTGCTCATGCGTTTCGCATTATATGGCTTCGCAAGGCT
AGACGTTCAGCTGATGAGCCGACCTGTTATTTATGTACATGGCTATTTCT
CATCCATCTCACGACTGCATTCTTGTAtgccatttcactggatttGATTC
TagcgtttttctttttcaacaaattggAACAGTGCTTATCGACGATCGTG
TTCTTGGGAATCAACATTTGTTTATGTCTAATATGTTGCACTATATCTTA
TTTCCCAAATCTACGGCAACGAGAATCGTCAAGCCAAATCGTATTCGCAA
CGCTTTTTTGTTCTGTTAGTTACGTCACGTGGATAGCTCTTTCAGACCCT
GAAAATGAGCATTGTAATATGTATGGAACAATTTTCACTGGATCCATTTT
AGAGAGTTCAACAAGTTTTCGTTCCTTGGCTTCACTTACTATGTTAATAC
CAGTCGTTTTGTATCAGTGCTTAAAGAAAACAGACACAAGCTCTTATACT
CTATCGCTACTTATTGAAAACGCTGGTATCAATTTAATCcaatgttttga
taattttattgtTCACATATCAATGGCAACTGCGTCAGCCTTTGTTTTAA
TGTCTGTTACTAACTCATACGAGCCTGTGCTCTCCATAGTCGAAACACTA
GGCTCAGCTCCTAAAAGTTCGGTCGTCTATTTCGAAGGCTATAATCGAAT
tcgttttttattattttgtgcGGTGAGCTCTCTCCTCCCTATATGTTATT
TACTCGTGCTACTGTACCGTGTTGTTGTGACGCTTGTTCAGAATTGTAAG
CAATATAGAGAAGAACAACGGCGGATGAGAGAGAATGGTGAAACAGCATC
AACGGTGGAGAACGGAGAGTTTGTTTACATTAGAATCTCCTTCGCGGAGG
CTGTTCGTCAACTACAGCTCAGTCGAAGAGAATTAGAAGCTCTACCTTAC
AATCAGAATGAAACGACCCTTCAATACCTCTTATTGCAATGTTTTTATAT
TACGGGTCATGATCTAGCTTATTGGCATTTCCCAAGACATATATCGCAGA
CTTATTTCAAAGGTCGAAACGGGAGTAACGCTTGTACCGTGATTTCTATG
ATTGTCGGGCGGTTTTTTGCCCGTTCTGATCTCGCCTTTCAGAATGATGG
TTATTTGAATACTGATTGGTTAAATTtgatttacaccgctattgaggaTG
GCAATCGTTATTATGACACCCTTATCAAGGAGGTTGGTGTTTTAGATTTG
AGTATAGAAGAGGTTTATGAGCGCCTTGGTCCCGCCCTAAATGTGGCGTT
GGTTCATCCTTCACTACCAATCTCATTTGAAGCAGAAGTCGAGACTGCAA
CTATCATCTATCAACTGAAACAACTTTTATTGAAGCGTCAAAAAatggtt
tgtttgtttattcATAAGAAGCGAACTTCATCCTTTCTTATCTATGAAAC
GGGACAGATGGTTTACGTGGACTCGCACGCCTTTGGTGAAAATGGCGCAC
TAATGGTTTCATCATCAAGTGAAGATACTCTGCAAAACCTTTTAATATTT
CTGAGAGATATTTTATGTGGCTCAGACAACCAGTTGGCTACACTGACTAT
CGTAGattatgaaaaacgaaaaactaaagaaaatatGTTTTATAAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17727MSTRG.17727Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17727.1.p1.exon1MSTRG.17727.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17727.1.p1MSTRG.17727.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000182_pilongenomesc0000182_pilon:258697..260928 +