MSTRG.17626.1.p1 (mRNA) -

Overview
NameMSTRG.17626.1.p1
Unique NameMSTRG.17626.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000179_pilon:706777..710920+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17626.1.p1 ID=MSTRG.17626.1.p1|Name=MSTRG.17626.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4144bp|location=Sequence derived from alignment at sc0000179_pilon:706777..710920+ (Clytia hemisphaerica_ch_hm2_pilon)
CATTTTGGTTTCAGAGCAAAAATGAATGACATAGTAAAAAATACAGAACT
TTTCATCAGCATTATGGGTATGTCAAGGACATCATCCGTTCAAAAGTGGG
ATCATGAAGCTTTCCAACGTGCTTTCAGATGGGCTCATTACTTTGAACag
gtaaaaaacattttttgtgcaAGCTTGATTCTTTTCTCTGTTATGATAGC
CCCTTTGGATACCACCCACCGAGACACCTGAATCCTGTGTCATTTTTTGG
AGCCTGCAAAGACAGAAACCTAAGAgtacaaaaaagaattttgttaATTT
GTCCTGATTTGTCAAATATCTTCTCCAGCATTTTGAGAAAGGATGTGTTT
TAAATATtgtctaaaaaactttttttataggTTTACAAGAAAACAAGGTC
GAAGCCCAATATCATGGAAAAGATTTCTAAGCAGCTTGATATGCTATGCA
GTGAGGTGGATGTGAAGTGTGGCCTACAACCAATCCGGTATGAGGATCTA
CCACACGTCAGTCAAATCTTGCGCAAAAACCTCTTGGAAAACCCTCACTT
GAATAGCGAATTCTATCTTGAATTAATCAGTCAGTTGAAAGACCCGCTAC
AACAGGAAGTGACTTACAAGAAACAGTTGCAAACATTGTCAAAGTTGAAA
GCTACTCTGCAGATTTTACAATTGATCCAAAAACGTTTTGAATCGAAACa
agagaagaaggatgaagaattgaaagaggaggatgatgaagatgaagatg
aatgtGTTGCTAGTGATTGTCTacatcaccatggcaataagaAATCACAA
ATCACTGCAAACGCATCCCTCCTTAGAAAATGTCTACTCAATGTCATTGG
ATCAGGTATCGCTCAAAATTTCCCCATTTTATGTTAAGCCTTACCACTTT
ATTCATAGTCTTTAAAAGTACGGGTATGGcaaaaaaagataataccaaaa
ttagaaaaaaactcaacgtaaatttcaaataaaaaagaaagaaaaaggtt
ttAACACAGTGATTGTTTTGATAGAATGGGTTGAtttttttATGGTTCAA
CAGAAATGAAATTAAGGAGACTTAAAGCGGACATGTTTAAAGATGTTATT
GTAGTAATATGAAACATGTTTTAACCTGGGCTaattatctgaaaattttt
gaagaagtttCTTACTTAATCCACTTACATTTtataaattaaaacatttt
ttcgcttTTCAGATTATTCAGCatttcaaagaaagaaatatcAACTTCAC
TCAAAACTAGACAGCATGTTGAAACACGAGTGTGGGTTGGATGTATTACT
TTCAGCACTTTTAATTGAAGACAGTGaccaatttgaaaatgttaccAAAT
ACATACTCGAATTTGTTGAAGGTtggtaaatttattttaaagaagaaaat
ttggtTTAAACTTTCATGGAGGGAAGCAGCTTAATTGCTTTTCCCTGTTT
GTTGTGACTTTTAGAACGCacttgatttattttttcagtggggctgaaac
AAATATAACTATTATTGTAGGGAATTTTGAGCGAAGGAGGTTACaatgag
attttagtgtattttaacgtttttcagaatttaaatttcGGGTGTGattt
gctattttagcacttccactttctttcattgaatatttcgagtTTAGAGG
GGTTAGGTGGCTATAatccttattggagcaaatttgagcttttaagtact
gagatcctaaggtcctaagtctaaagtctcatgttaaaactctactttca
aactgtagtttaaggcgcttgaaaatcatttgtggtgtttaaaatttcgc
cgtgatatcccctttgtctcaaataatGTAGTAATCTAATGGTTATGAGG
AAAactcgggataaatttcccgaggtcaattttgaaattttttgaaattt
ggaaatttgaccgaggttaattttatatccagaatttcataaaaatatgc
atgggattcctggttaatctcatggtttggattgaaattctaacaattct
gaaagacgtcaattaaCTTGAACACTTgaaatcaatctgaaattttaaaa
agaggtctcaaaaaagtcataaaatgcgaatcgagttttaattgaatagt
attcaaaattacaaaagctaggaggaaatacaaattaacgtaagcaaaaa
cgtcaatcgaatttcaatcaaccatgagatggGAGGGAAGGGAgcgcatc
gaatagtagagcgtcgtttgtGAGAGTTTCTTGTCGATTGGGACTTCGAG
TATTAATGGAGTATCGAATAACAGAAAGTCGattaagagagcgtcaactg
taattacaATTCTATCTGTAAAATTATGTGTACTTTTTAACTACTTATTT
AGatttaagaaaatgaaacatGCTTCTACTACAAATTTATAACAATAATA
TCAACTTAGGAATTATACATTTTGAAAGTTAACCATAACCTTACTTTTTT
GTTATCTGTCATTTAGATATTCTTGTACCGAAATGGAAGGTTAACTGGAA
AGATTTCTTACAATTCCCATTATCCAACCTATATGGTCTGTGTAGTGAGA
AACATCCTGCATTTTGTGGTGCATATCTTGATACTTTGATTTTGTGTGGA
GATCGTATTCAAGAATTGCTCGTAAAGAATAACTATGTTCTTCTACTTGG
AAAGTGAGTAGACTAACCCCTTTTCTAAAACTCCTTAAATCAGCAATGTT
TCTTGTAGTCTACATAATATACAGCTTCAGGCTTTTAGTatttactcttg
gtctataggcactgctataggcgacCACTAGTGGCCTCCACCGgaaattt
gctttttaaaagGCTTATTTATCaatagaaatttcaaataaaagaatgtt
taaaacacagctgattggcttaggtttcgaagcTCTCtatgtttcattaa
aacctcagtgcgcatgcgatgtatccggaaaaattcaatattcaaaacaa
gcgcagtgcgcatatcccgaagagtagaaggagttttacgctcgaaacga
aggaagatatgatgTAGCCTAGATTTCTTCTTGTCttttttttGCctcaa
atattaccttattctACTAACGTATtggaaaattaaacaaaattccgtat
tacttcgaataaacgcccccttcttttaaacgcccacctcgaataaacgc
ccctcctaaaaggaaaattatttgataaacgcccccctcaaataaacgcc
cccttcgaataaCGCTCCCTCCgggggaggggcgtttattagaaacttgt
gactttttaatacttcaatatcagtgttgattgggtttgaaaaggaagat
tttagacatttcttgtaaccaaagcagttttcgatgcaatttcaatcgtt
gaaccaaagaaattttgcacttaaatcctgataaagaactaaaaaagggt
atatttgctctaaatattcgactttagactaaaataattcaataaacgcc
cccttcttttaaacgccctccccccctcgaataaacgcccctcctaaaat
tgaaaaaatgaataaacgtcccgggcgtttattcgaagtaatacggtagt
tCTCTGCCCACTAAAAGAGTTTTGTAAACAAGAATGAGTTTTGACCACCC
TCACTTCAGTTAAATCGGAAAACGGGATCTTTTGAACCATGATCTTAAGT
TGGACCAAGACCTTTGACAGTTTTAGAATCCTAGAGTTTGTCTTgataaa
atatgatattttttattttactttgatCTCTTCAGGAGGGATAAGGATGC
GAACGAACAATTGtgcaaatacttttttttcttgatgcaAAGTCACTTGT
CAAAGTTTGCTCAAAATGACCCATCCTTAGAAGTCAAATTGTGCTCGCTC
ATCCAAAACAAAATTCGTAACACAGAAGAGATTCCTATTGATTCGAACGT
GTGGAAACGACTTTCAGTGGAACTCTAAAAGTAGAATCGAAAGGAATATA
CCTTGTATACTCCTTGATATTTTACTGCTGTCTCTGCTATAAAGCGaggt
aattttttataaaaatatatcgTGTTTGTCTTTTACATACGCAAAACGAT
TTAAAATACCaattgcttgtttttctttaccaaaatttattttgtcccat
tttaaggataaatcttCACGTTGTTCTTCTTTACAGAATTCAGC

Coding sequence (CDS) from alignment at sc0000179_pilon:706777..710920+

>MSTRG.17626.1.p1 ID=MSTRG.17626.1.p1|Name=MSTRG.17626.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5715bp|location=Sequence derived from alignment at sc0000179_pilon:706777..710920+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATGACATAGTAAAAAATACAGAACTTTTCATCAGCATTATGGGTAT
GTCAAGGACATCATCCGTTCAAAAGTGGGATCATGAAGCTTTCCAACGTG
CTTTCAGATGGGCTCATTACTTTGAACaggTTTACAAGAAAACAAGGTCG
AAGCCCAATATCATGGAAAAGATTTCTAAGCAGCTTGATATGCTATGCAG
TGAGGTGGATGTGAAGTGTGGCCTACAACCAATCCGGTATGAGGATCTAC
CACACGTCAGTCAAATCTTGCGCAAAAACCTCTTGGAAAACCCTCACTTG
AATAGCGAATTCTATCTTGAATTAATCAGTCAGTTGAAAGACCCGCTACA
ACAGGAAGTGACTTACAAGAAACAGTTGCAAACATTGTCAAAGTTGAAAG
CTACTCTGCAGATTTTACAATTGATCCAAAAACGTTTTGAATCGAAACaa
gagaagaaggatgaagaattgaaagaggaggatgatgaagatgaagatga
atgtGTTGCTAGTGATTGTCTacatcaccatggcaataagaAATCACAAA
TCACTGCAAACGCATCCCTCCTTAGAAAATGTCTACTCAATGTCATTGGA
TCAGATTATTCAGCatttcaaagaaagaaatatcAACTTCACTCAAAACT
AGACAGCATGTTGAAACACGAGTGTGGGTTGGATGTATTACTTTCAGCAC
TTTTAATTGAAGACAGTGaccaatttgaaaatgttaccAAATACATACTC
GAATTTGTTGAAGATATTCTTGTACCGAAATGGAAGGTTAACTGGAAAGA
TTTCTTACAATTCCCATTATCCAACCTATATGGTCTGTGTAGTGAGAAAC
ATCCTGCATTTTGTGGTGCATATCTTGATACTTTGATTTTGTGTGGAGAT
CGTATTCAAGAATTGCTCGTAAAGAATAACTATGTTCTTCTACTTGGAAA
GAGGGATAAGGATGCGAACGAACAATTGtgcaaatacttttttttcttga
tgcaAAGTCACTTGTCAAAGTTTGCTCAAAATGACCCATCCTTAGAAGTC
AAATTGTGCTCGCTCATCCAAAACAAAATTCGTAACACAGAAGAGATTCC
TATTGATTCGAACGTGTGGAAACGACTTTCAGTGGAACTCTAAATGAATG
ACATAGTAAAAAATACAGAACTTTTCATCAGCATTATGGGTATGTCAAGG
ACATCATCCGTTCAAAAGTGGGATCATGAAGCTTTCCAACGTGCTTTCAG
ATGGGCTCATTACTTTGAACaggTTTACAAGAAAACAAGGTCGAAGCCCA
ATATCATGGAAAAGATTTCTAAGCAGCTTGATATGCTATGCAGTGAGGTG
GATGTGAAGTGTGGCCTACAACCAATCCGGTATGAGGATCTACCACACGT
CAGTCAAATCTTGCGCAAAAACCTCTTGGAAAACCCTCACTTGAATAGCG
AATTCTATCTTGAATTAATCAGTCAGTTGAAAGACCCGCTACAACAGGAA
GTGACTTACAAGAAACAGTTGCAAACATTGTCAAAGTTGAAAGCTACTCT
GCAGATTTTACAATTGATCCAAAAACGTTTTGAATCGAAACaagagaaga
aggatgaagaattgaaagaggaggatgatgaagatgaagatgaatgtGTT
GCTAGTGATTGTCTacatcaccatggcaataagaAATCACAAATCACTGC
AAACGCATCCCTCCTTAGAAAATGTCTACTCAATGTCATTGGATCAGATT
ATTCAGCatttcaaagaaagaaatatcAACTTCACTCAAAACTAGACAGC
ATGTTGAAACACGAGTGTGGGTTGGATGTATTACTTTCAGCACTTTTAAT
TGAAGACAGTGaccaatttgaaaatgttaccAAATACATACTCGAATTTG
TTGAAGATATTCTTGTACCGAAATGGAAGGTTAACTGGAAAGATTTCTTA
CAATTCCCATTATCCAACCTATATGGTCTGTGTAGTGAGAAACATCCTGC
ATTTTGTGGTGCATATCTTGATACTTTGATTTTGTGTGGAGATCGTATTC
AAGAATTGCTCGTAAAGAATAACTATGTTCTTCTACTTGGAAAGAGGGAT
AAGGATGCGAACGAACAATTGtgcaaatacttttttttcttgatgcaAAG
TCACTTGTCAAAGTTTGCTCAAAATGACCCATCCTTAGAAGTCAAATTGT
GCTCGCTCATCCAAAACAAAATTCGTAACACAGAAGAGATTCCTATTGAT
TCGAACGTGTGGAAACGACTTTCAGTGGAACTCTAAATGAATGACATAGT
AAAAAATACAGAACTTTTCATCAGCATTATGGGTATGTCAAGGACATCAT
CCGTTCAAAAGTGGGATCATGAAGCTTTCCAACGTGCTTTCAGATGGGCT
CATTACTTTGAACaggTTTACAAGAAAACAAGGTCGAAGCCCAATATCAT
GGAAAAGATTTCTAAGCAGCTTGATATGCTATGCAGTGAGGTGGATGTGA
AGTGTGGCCTACAACCAATCCGGTATGAGGATCTACCACACGTCAGTCAA
ATCTTGCGCAAAAACCTCTTGGAAAACCCTCACTTGAATAGCGAATTCTA
TCTTGAATTAATCAGTCAGTTGAAAGACCCGCTACAACAGGAAGTGACTT
ACAAGAAACAGTTGCAAACATTGTCAAAGTTGAAAGCTACTCTGCAGATT
TTACAATTGATCCAAAAACGTTTTGAATCGAAACaagagaagaaggatga
agaattgaaagaggaggatgatgaagatgaagatgaatgtGTTGCTAGTG
ATTGTCTacatcaccatggcaataagaAATCACAAATCACTGCAAACGCA
TCCCTCCTTAGAAAATGTCTACTCAATGTCATTGGATCAGATTATTCAGC
atttcaaagaaagaaatatcAACTTCACTCAAAACTAGACAGCATGTTGA
AACACGAGTGTGGGTTGGATGTATTACTTTCAGCACTTTTAATTGAAGAC
AGTGaccaatttgaaaatgttaccAAATACATACTCGAATTTGTTGAAGA
TATTCTTGTACCGAAATGGAAGGTTAACTGGAAAGATTTCTTACAATTCC
CATTATCCAACCTATATGGTCTGTGTAGTGAGAAACATCCTGCATTTTGT
GGTGCATATCTTGATACTTTGATTTTGTGTGGAGATCGTATTCAAGAATT
GCTCGTAAAGAATAACTATGTTCTTCTACTTGGAAAGAGGGATAAGGATG
CGAACGAACAATTGtgcaaatacttttttttcttgatgcaAAGTCACTTG
TCAAAGTTTGCTCAAAATGACCCATCCTTAGAAGTCAAATTGTGCTCGCT
CATCCAAAACAAAATTCGTAACACAGAAGAGATTCCTATTGATTCGAACG
TGTGGAAACGACTTTCAGTGGAACTCTAAATGAATGACATAGTAAAAAAT
ACAGAACTTTTCATCAGCATTATGGGTATGTCAAGGACATCATCCGTTCA
AAAGTGGGATCATGAAGCTTTCCAACGTGCTTTCAGATGGGCTCATTACT
TTGAACaggTTTACAAGAAAACAAGGTCGAAGCCCAATATCATGGAAAAG
ATTTCTAAGCAGCTTGATATGCTATGCAGTGAGGTGGATGTGAAGTGTGG
CCTACAACCAATCCGGTATGAGGATCTACCACACGTCAGTCAAATCTTGC
GCAAAAACCTCTTGGAAAACCCTCACTTGAATAGCGAATTCTATCTTGAA
TTAATCAGTCAGTTGAAAGACCCGCTACAACAGGAAGTGACTTACAAGAA
ACAGTTGCAAACATTGTCAAAGTTGAAAGCTACTCTGCAGATTTTACAAT
TGATCCAAAAACGTTTTGAATCGAAACaagagaagaaggatgaagaattg
aaagaggaggatgatgaagatgaagatgaatgtGTTGCTAGTGATTGTCT
acatcaccatggcaataagaAATCACAAATCACTGCAAACGCATCCCTCC
TTAGAAAATGTCTACTCAATGTCATTGGATCAGATTATTCAGCatttcaa
agaaagaaatatcAACTTCACTCAAAACTAGACAGCATGTTGAAACACGA
GTGTGGGTTGGATGTATTACTTTCAGCACTTTTAATTGAAGACAGTGacc
aatttgaaaatgttaccAAATACATACTCGAATTTGTTGAAGATATTCTT
GTACCGAAATGGAAGGTTAACTGGAAAGATTTCTTACAATTCCCATTATC
CAACCTATATGGTCTGTGTAGTGAGAAACATCCTGCATTTTGTGGTGCAT
ATCTTGATACTTTGATTTTGTGTGGAGATCGTATTCAAGAATTGCTCGTA
AAGAATAACTATGTTCTTCTACTTGGAAAGAGGGATAAGGATGCGAACGA
ACAATTGtgcaaatacttttttttcttgatgcaAAGTCACTTGTCAAAGT
TTGCTCAAAATGACCCATCCTTAGAAGTCAAATTGTGCTCGCTCATCCAA
AACAAAATTCGTAACACAGAAGAGATTCCTATTGATTCGAACGTGTGGAA
ACGACTTTCAGTGGAACTCTAAATGAATGACATAGTAAAAAATACAGAAC
TTTTCATCAGCATTATGGGTATGTCAAGGACATCATCCGTTCAAAAGTGG
GATCATGAAGCTTTCCAACGTGCTTTCAGATGGGCTCATTACTTTGAACa
ggTTTACAAGAAAACAAGGTCGAAGCCCAATATCATGGAAAAGATTTCTA
AGCAGCTTGATATGCTATGCAGTGAGGTGGATGTGAAGTGTGGCCTACAA
CCAATCCGGTATGAGGATCTACCACACGTCAGTCAAATCTTGCGCAAAAA
CCTCTTGGAAAACCCTCACTTGAATAGCGAATTCTATCTTGAATTAATCA
GTCAGTTGAAAGACCCGCTACAACAGGAAGTGACTTACAAGAAACAGTTG
CAAACATTGTCAAAGTTGAAAGCTACTCTGCAGATTTTACAATTGATCCA
AAAACGTTTTGAATCGAAACaagagaagaaggatgaagaattgaaagagg
aggatgatgaagatgaagatgaatgtGTTGCTAGTGATTGTCTacatcac
catggcaataagaAATCACAAATCACTGCAAACGCATCCCTCCTTAGAAA
ATGTCTACTCAATGTCATTGGATCAGATTATTCAGCatttcaaagaaaga
aatatcAACTTCACTCAAAACTAGACAGCATGTTGAAACACGAGTGTGGG
TTGGATGTATTACTTTCAGCACTTTTAATTGAAGACAGTGaccaatttga
aaatgttaccAAATACATACTCGAATTTGTTGAAGATATTCTTGTACCGA
AATGGAAGGTTAACTGGAAAGATTTCTTACAATTCCCATTATCCAACCTA
TATGGTCTGTGTAGTGAGAAACATCCTGCATTTTGTGGTGCATATCTTGA
TACTTTGATTTTGTGTGGAGATCGTATTCAAGAATTGCTCGTAAAGAATA
ACTATGTTCTTCTACTTGGAAAGAGGGATAAGGATGCGAACGAACAATTG
tgcaaatacttttttttcttgatgcaAAGTCACTTGTCAAAGTTTGCTCA
AAATGACCCATCCTTAGAAGTCAAATTGTGCTCGCTCATCCAAAACAAAA
TTCGTAACACAGAAGAGATTCCTATTGATTCGAACGTGTGGAAACGACTT
TCAGTGGAACTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17626MSTRG.17626Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17626.1.p1MSTRG.17626.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17626.1.p1.exon1MSTRG.17626.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17626.1.p1.exon2MSTRG.17626.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17626.1.p1.exon3MSTRG.17626.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17626.1.p1.exon4MSTRG.17626.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17626.1.p1.exon5MSTRG.17626.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000179_pilongenomesc0000179_pilon:706777..710920 +