MSTRG.17619.2.p1 (mRNA) -

Overview
NameMSTRG.17619.2.p1
Unique NameMSTRG.17619.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000179_pilon:610503..612543-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17619.2.p1 ID=MSTRG.17619.2.p1|Name=MSTRG.17619.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2041bp|location=Sequence derived from alignment at sc0000179_pilon:610503..612543- (Clytia hemisphaerica_ch_hm2_pilon)
AGACGCGACTTTTTTGTTTCAAATCACTCCATACGTTTTTCTTCTTTTTT
CAGTCATTTTACAGCTCGTGACGACAAGTGTTTATACATGTTATTCGAAT
ACGTGGCCGGTGGTGAATTGTTCACTTATCTCCGTAATAAAGGACGTTTC
ACACCTGAAGATACCAAGTTTTACATTAGTGAGATAATAAGCGTACTTGG
TTACTTGCACGAAATGAGTATTGCTTACCGAGATCTGAAACCTGAGAATC
TACTCCTTGACCATGAAGGACATTTGAAATTCACAGATTTTGGTTTTGCT
AAAGTTGTTGAAGATATGTAAGTGTACTATATTTCACAGATCTGATTAAA
GTTGTGATATCGTTATCTATCTCGTTCTATTAAAAACAAGCTCTATTGTG
TTTTGTGATGCAGAAAATATGAGGGTCTTACATATTCTTCATTGAACAAC
CTGCTGATCAATGATTATTGTATCGAGTTCTATGTGAAGTGCCTTGTAAG
CTCTTTTACACTGCTCCGATTTTAACGCACTGGTTCAGCAAGAACCGAGC
CACCAAGATAGTATCTATACACCCTCTTCTCACAGACTCGATGAGATTTT
ATCAGCCAGTAAAAATAACGGTCTCAAACTCGATGGGGATTGATAGTCCC
ATGTTTCTAATGGCTGGGGATTTGAATTCAATTGTTTTCTAGCCAAAAAA
TGAGTGAAAAGATAGTACAATACTTTGCTGTGGGGATTTGCTCATCTGAT
TTATTTTCAGTGGGTACAAAAATTAGAGTATAATTTTCCACTGGAGACAA
TATTTTCGACAATTTTTCCAGTGGGTCTTTAAGAAGGGGATGTACCTATC
GTCTCTTTATCTTATCATGAGGTAACTTGCCTGAGATAAGGACCTAAATC
TTGATTAAGCTATTTTCTACAAGTAGAAATGAAAGTTCTTCTTCTTCTTT
ATTAGCACGTGGACGTTATGCGGTACACCAGAATATCTGTCACCAGAAGC
AGTGCTTGGGAAAGGGTACGATGTGTCTTGTGATTGGTGGGCCCTTGGTG
TTCTTACATTCGAAATGTTGGCTGGGTAAGTAAACTGGGTACATTTTTAT
AAGAACAAACTATATAAGAACACAAGGCTCCTTAAAACAAGTTGAGAACA
TTTTAGATTTTAGGGCCTTCTGGACTCTAAAAGACCCATTTTTTATTTCT
TGGACAAAAAAACTCAAAAATTGGTGAAAATAAGAACATGTTAAGAACAT
TTTTACGCTTAAAACCCGAAAAGTTAAGAACATCTGAAAGCTTCAAAAAT
TATGGATATTCTAATAAAAAGGCGTGTAACAATAACTGCTGTTTGGATTC
AAAGATCTTATTATATCACCTTCCACTAGTGTAGATCTGAGATCTCCTTT
CGAATTCAATTTTTTAGAATAGGACTGATTCCTATTGAAAGGAAAGTTTG
CTGAACATAACATAATCATATTTTTTTTGCAGGGAGGCACCCTTTGTTGA
TTCCAATTCATTCGTGTTGTTTCAAAAGATCTTATCAGGAGTCATCAACT
GGCCTTTGTTTCTCAAGAACACCACTGAACAGTATAAATATATATATTCT
TTAAATTTAACAGAAAATCTTGATTTAAAATACCCAACCCAGTTTGTTCG
TAAATAGGAATTAAAAAGCGAAAAATACTCCTTGAAAGTTATTAGTGCGT
ACAGCGTCCTTTGCGTTAACTTCCCTTACATATAGATACTTGCAATATCA
AAAAACGCAATAACTTTCATGGTTTATTAACCGTTCAAATGTACTGTGAG
ATTTAAACCCTTATAAATTCAAGCTAAAAGAAAATTTGACGTATGCGACG
CGGAGTGATATAGGCCTGAAAATTTTATCAAATTATGGACCTGACAAGCC
TCAAAATGAACAAGCAGTAGTATTTGTTAGATTTGGAAGTTGTTATGAAC
ACAAAACACTTTGAATTTGTTTAGAGACTTCATCAAGCAACTAGTGGTGG
AAAGAAGTGAGCGACTTGGTCAACGTAAAGGATTGGTATGT

Coding sequence (CDS) from alignment at sc0000179_pilon:610503..612543-

>MSTRG.17619.2.p1 ID=MSTRG.17619.2.p1|Name=MSTRG.17619.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=882bp|location=Sequence derived from alignment at sc0000179_pilon:610503..612543- (Clytia hemisphaerica_ch_hm2_pilon)
CACGTGGACGTTATGCGGTACACCAGAATATCTGTCACCAGAAGCAGTGC
TTGGGAAAGGGTACGATGTGTCTTGTGATTGGTGGGCCCTTGGTGTTCTT
ACATTCGAAATGTTGGCTGGGTAAAGACGCGACTTTTTTGTTTCAAATCA
CTCCATACGTTTTTCTTCTTTTTTCAGTCATTTTACAGCTCGTGACGACA
AGTGTTTATACATGTTATTCGAATACGTGGCCGGTGGTGAATTGTTCACT
TATCTCCGTAATAAAGGACGTTTCACACCTGAAGATACCAAGTTTTACAT
TAGTGAGATAATAAGCGTACTTGGTTACTTGCACGAAATGAGTATTGCTT
ACCGAGATCTGAAACCTGAGAATCTACTCCTTGACCATGAAGGACATTTG
AAATTCACAGATTTTGGTTTTGCTAAAGTTGTTGAAGATATCACGTGGAC
GTTATGCGGTACACCAGAATATCTGTCACCAGAAGCAGTGCTTGGGAAAG
GGTACGATGTGTCTTGTGATTGGTGGGCCCTTGGTGTTCTTACATTCGAA
ATGTTGGCTGGGTAAAGACGCGACTTTTTTGTTTCAAATCACTCCATACG
TTTTTCTTCTTTTTTCAGTCATTTTACAGCTCGTGACGACAAGTGTTTAT
ACATGTTATTCGAATACGTGGCCGGTGGTGAATTGTTCACTTATCTCCGT
AATAAAGGACGTTTCACACCTGAAGATACCAAGTTTTACATTAGTGAGAT
AATAAGCGTACTTGGTTACTTGCACGAAATGAGTATTGCTTACCGAGATC
TGAAACCTGAGAATCTACTCCTTGACCATGAAGGACATTTGAAATTCACA
GATTTTGGTTTTGCTAAAGTTGTTGAAGATAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17619MSTRG.17619Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17619.2.p1MSTRG.17619.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17619.2.p1.exon4MSTRG.17619.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17619.2.p1.exon3MSTRG.17619.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17619.2.p1.exon2MSTRG.17619.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17619.2.p1.exon1MSTRG.17619.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000179_pilongenomesc0000179_pilon:610503..612543 -