MSTRG.17613.1.p1 (mRNA) -

Overview
NameMSTRG.17613.1.p1
Unique NameMSTRG.17613.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000179_pilon:525566..531204-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17613.1.p1 ID=MSTRG.17613.1.p1|Name=MSTRG.17613.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5639bp|location=Sequence derived from alignment at sc0000179_pilon:525566..531204- (Clytia hemisphaerica_ch_hm2_pilon)
TAGATGTTGTGTTCATGTATAAGGTGAAGAGTGCTTTGAAAAAACTCGAA
AGTGATAGTAGTTACTACACGTAAGCGAGTAAAGTAGTGTTTTTCAATTA
ATAATGGCAATCTCTAAGAAAGTGGGTAAGTTTGTTGGAGTATATAAACT
TTTATATAAAAGGGCGTGGCCTCGATGCTAATTAGGGAAATTCCCTTTTT
TAGGATTCAAAACACAAAAATTGCAAAGTTTGGCAAAGTTTGGCTAGTTC
TCAGATCCCTCGTTGAATTTGGATCAATTTCTAAACACCTCATCTTATGA
CCGGGGAATTTCCCTAATTAGCATCGAGGCCACGCCCTTTTTGTCAATGA
ATTTTGTCCACAATTATAATCATTGACATGTCCGGTCATAAGATCAGGTG
TTTAGAAATTGATCCAAATTCAACGAGAGGACTGAGAACTAGCCAAACTT
TGCAATTTTCGTGTTTTGAATCCTAAAAAAGGGAATTTCCCTAATTAGCA
TCGAGGCCACGCCCTTTTTGTCAATAAATTTTGTCCACGATTAATCATTG
ACATATCCGGTCATAAGATCAGGTGTTTAGAAATTGATTCAAATTCAACG
AGGGGACTGAGAACTAGCCAGACTTTGCCAAACTTTGCAATTTTTGTGTT
TTGAATCCTAAATAAGGGAATTTCCCTAATTAGCATCGAGGCCACGCCCT
TTTTGTCAATAAATTTTGTCCACAATTAATCATTGACATGTCCGGTCATA
AGATCAGGTGTTTAGAAATTGATCCAAATTCAACGAGGGATCTGAGAACT
AGCCAAACTTTGCCAAACTTTTCAATTTTCGTGTTTTGAGTCCTAAATAA
GGGAATTTCCCTAATTAGCATCGAGGCCACGCCCTTTTTGTCAATAAATT
TTGTCCACGATTAATCATTGACATGTCCGGTCATGGTAAGATCAGGTGTT
TAGGAATTGATTTAACCTCAACGAGGGGACTGAGAACTAGCCAAAGTATG
CAATGGGCTGGAAATTTGAATCCTAAAAAGAGGAATTTCCCTAATTAGCG
TCAAGGCCACGCCCATTTTTATATCAATTTTTGTCAAGAACTGCTCTATG
TTATGTAATCTTTCAAGATCTTTTGGTTTGAAGTCAATATCTTTTTTCAA
TTTTTTTTTACAAAGCTTTTTAGGGGCTTTTTACGAATCCTGAATCCGAA
TCCGAATCCTTGAATCCCAATCCTACAATCCAGCGAATCTACCCTTCTTT
TCTTGAGGAAATATGTTCTAAAGATGGTCAATTCTTTCAAACAGAAGATG
AGATTGAATTCTCAATGAATCATTTTCTAAGGTCTAAGATTTATAACAGT
TGACACAGGGACAATTAATGTTTCCTTTTTTTTTGGAATCAGCAAAGTTC
AAAGTATACTCGTGTTACATACATTATGTCCCTAAATGCAATAAATTCGG
CGCAAAAAAAAACTGAGGGACTGCATGACGTCATAAAACTTAAAACCTTA
AAGGTTTTGTTTTGAAGTACAATTCAACATTTTTTTAAAAGATCCAGTAG
ATTTTTTATGAGGCTCACATTTGTTCTTATCCTGTTCTGAGGTATTCAAG
GATTTATACCTAATTTTTACAAATTTGACCCCTAAATTGCTTGAAATTGA
GTAATTTCAGGCTCAGCATCGTTCTTAAACAGTTCTTATTTTTGAGCAAT
TTTTAGCCTCATTGTTCTTATAAAAGGAAAAAGTGTGTAAATATGAAATT
TGGTCCTTTGACAGGTATTCGGGATCCCTAATTTTCGAAAAAAAATGACG
AAGACAGCAGAAATCGAACATTTTGCTAAAATTTCTTGAAAGAATGCAAG
AAAATAATTAACAGTGATTTTTGAATTTCTACATCCTAATACGCTTTTTT
TGAAATGTAAATGACCAAAGACCCTCAGCTTTCTGCGCCAAACTTATGTT
CTTTTTGGGATATGTGATAAGTAAACCAAAGTAAAAAGTTTTTCATCCTT
TTTTGAGAATTCCCTCTTAAAAATCATAGCGTATGAAATATTTTTACAGC
AGTAGCCAACTTATGAACATTAAATTGTTGAGATACGAAAAAAGTAAGAG
TTAGTACACTTGTGAAATACTTCAATTGCGACCCATACAACTTGTTTTAG
TCAGTTTTTTTTCAACCTTATTCTTCATCACTTTGTTCAGTTTTTCCATT
TAATTGTTCGTCACAACATTCTATATTAACTGTTCTCCTTTTTTCCTTGC
TAGTTTTCATCGGAAATCCAGGCGTTGGAAAAAGCACTTTGCTAAATTGT
TTACTGGGGCGGAGCGCATTCAAGAGTGGCGTTAACATCGCCACTGGAAT
TTCATACCAATTGCAAACAGAAGCTGATGAAGTGAGGGGCGTCACTTTTT
GTGACACGCCCGGTCTAAAAGATGTGGCAATGCGAAACAAAGCAGCTATT
GCAATCACCGAGGCGTTGAAACAAGGTGGAGAGTTTCTCGTTACGTTTAC
CATCACTTTGGAAGCCGGAAGAGTCAAACCAGAAGATATTTCCACCATCG
AAGCGGTTGTCAAGGCAGCCCCTGAAATTAGGGACTTTGGTTTAGTGATC
AATAAACTGTCGAAGAATCTTTACAATCGTCTCTCATCGAACGCTTCTCA
AAAAGAAAGTGTCATCAAAGAGGTCACAAAATCCTTGACATGCAATCAAC
CCTCTGTTCTCCTTCTACAAAACAACGATAATCTTGAAGGTGAAGAAAAC
GCTCACACCAATTTACCATCTTTGTCTGATTTTGTGTTCCGTACCATGAA
ATCTATCGTTATTCACACAAACAATGTGCAAGATGTGAACGCTGGTCAAC
AATACAATGTCGCTTATCAAAGGGAAATGGCAGCTAAAATGAAGGCTGAA
AAACAAGAAACCGAGCGCCTTAGAAAAGAGAGAGAAGAGGAGGCTAGGAG
ACAGGCTAGACAGCGTCAAGAAGCGGAGGATAGAAGGAGACGACAAGAGG
CTGAACGACAACAACGCGAATGGGAATATGAACAACAACGGAGGAGGGAG
CGTGAACGAGAACAAGAAAGATTACAACGTGAAAGAGAGGCTAGGCAAGC
AGCAGAACAAAGAAGGCGTCAAGAGGAGATAGAAAGAGAAAAAGTGAGAC
AACGACAGGAAGAAGAAAGGCGTCAACGCCAACTAACATACCAACGCCAG
CAAGCAGCCGCCCGCGCACGTGATGACGGCTGTATTATATTGTAGTATGA
AATAAGAATAAATCTTTTTTGTTAAAAAGACTTTTTGTCACCCATATACT
TGTATACACCTTATTTACTCAAGGTAAGATGGAACATTTAATGTTCAAGC
CCAAAATTGAATGACTTTTAGCCAAATCCGAGAAAATAGCGAGTTTATGT
ATCTACCCTTTGAGAACGAAGTCTGAACAACTCGCAGTTGTGTCCCACAC
GATCGAGGATGGTAAAAGCACTGATTCTTCTCCTGAACAGGATTTTGAAA
AAACGTTTCCGCTGCAGAAACCAGTGTATATAAACTGGCTAATTTCATTC
AAGGTGAAGACAAACAGTAGAATTGTAAGAAAATAATAATATAAGTGTTT
TGTACAGTTCTTAATGAATTTCATTTCATTTTCATAGAAAACAAAAAATA
AAAGTGACAAAGAAAAAAAAGATCGAATAAACAATAAAATGGAGAAGAAT
GGAAACAATCACAGCGAAACAAGAAGAAATCCATCAGGTATATAAATCAA
TTGTTTATTCATTTTCCTTTATAAACTAGAAAATAAGCCCTAAGACTAAG
AATATGAATTCGTTCTTCGTACATCATACTCCCGAGCTTATTCGGTATTT
GTAGCGGCCGTAGCATGAAGGTAAGCTACGGTGGGCAAGGTTGTGGGTTC
AATCCTCAACCGGTCATATCAAGACCTTAAAATGCTACTTGGTGCCTCTC
TACTTGATACTCAGAAATTAAAAAAAAGGGTCAAGGGTGAGAGGAGAAAT
CTAGGGAAAGGAGAGGCGACAACAAGAGACAAGGGAGCCTACGGGTCACC
CTCCACTGCAAAACTTACTTACTAGTAGCTAACAGCTGCAATTCAGTATA
AATTCTGTTTTTATAATGAACACGTTTGAAAGAACAAAATTCAGTGCTTC
GGACTATTTCCCCAAAACCTTCTTCAACACAAAGGTAATAAATCTGGAGC
CATTAGACCTGCAAACACTCTTAAGCAATGCCTTTTCTTTAGGGAATGGT
GCCACAAACAGAGAATATGTCTTATTTGCTGGTAACCCGGGGAGTGGCAA
AAGCACAATCTTGAACTGCTTGATGGCATCAAGAAGTCCAGACCCTCTTC
ATGAAAGCCAGAGATTCAAGTCCGGTGTAGCTATTGCATCAGGGATGACG
TACCAACTGGACAAGAAAGAAGTTTGTGGAGTTACTTACATGGATACTCC
AGGTCTGGATGACGTCAATAAACGAAAACAAGCTGCTGAAGCCATCACCA
AGGCTTTGAGAGAGAATGGAAAATATCAAGTCATTTTTGTGGTCACTTTG
GAAGCTGGTCGAGTGAAACCGGCAGATGTGGCAACCATTCAATTGATCCT
TGAAAGTGCAAAAGAGATAACTCATTATGGTGTCATTTTCAACAAGCTGA
GCAAGCCAGTAATGAAAAAGCTGACGGCCAAAGACGGCAAGATGGCGCTG
ATCACTCAAGTATCTATTCAACCAGAAAAGGGAAAACCGAAGCCGCTACC
ATTTCCTTTGTTTTTGAAGAAAGATGGTGAACTTGAAGATGAGGATGATG
CAGTTGCTGAATTCCCTGAACTGGATACTTTCTTCGGTGGGTTGCCTTAC
ATTGACATCAAGAAAGAGAACGTCCATGACATCCCAACTGAAAGTTTTGA
AGCTATGAAAAACAAGCTTGAAGATGCGCTTGACCACATGAAGAAAGATC
GAGAGTCCATGAAACGACAAATGGACGAAGATCGAAAAAACTTCAGACGA
ACACTTGAAGAAATGAATAGAAAAGAGCAAATGGAGAGAGAGAGATTCGA
AAAGGAGCGGGAAAGATCGGAGAAGAATCATGACAGTCAAATGGATATGA
TGAAAACACAAATTAAAGAAACAAAAGAACAAGCAGCCAAGAGTGAGGTA
GCATCGCAGAAAAGCCATGAAGCTCAGATGAAGAAAGATCAACTTGATCA
TGCGTTGGCAATGAAACAATTGGACCAGGCACATCAAAGAAGAATGAAAC
AAATCGATAACAACAAAAGAAGAGGATTCTTCAGCTTTCTATTTGGCTGA
TATTTCTTTCACATTCCTGTGGACTAACAAGAAAAACTATTTTACAGTTT
ATATTTACTTCATACGAATACCATTTTCTTACAATAAAATGTCAAAAGTA
TACTCACCATTGATTTCTAAAGCCCTAAGGGCTAGATGGCGTGCTTCGGC
TAAAAAGTGTGCCGTGGTTAGGTAGAAAATCCTACCTAGGTCACGTGACA
TTACATGAGAATTTCAGCGCTTGACCAATCAGAAGCTTCGCAGGTTTTCG
AAAACAATAGTAACAATATTTTTTCCGATAATCATTTTTTTTAGCCTGCG
ATGGCTTAAAGCACGGCAACTAGCTCTTCGGGGCTTCGG

Coding sequence (CDS) from alignment at sc0000179_pilon:525566..531204-

>MSTRG.17613.1.p1 ID=MSTRG.17613.1.p1|Name=MSTRG.17613.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2214bp|location=Sequence derived from alignment at sc0000179_pilon:525566..531204- (Clytia hemisphaerica_ch_hm2_pilon)
GGAATGGTGCCACAAACAGAGAATATGTCTTATTTGCTGGTAACCCGGGG
AGTGGCAAAAGCACAATCTTGAACTGCTTGATGGCATCAAGAAGTCCAGA
CCCTCTTCATGAAAGCCAGAGATTCAAGTCCGGTGTAGCTATTGCATCAG
GGATGACGTACCAACTGGACAAGAAAGAAGTTTGTGGAGTTACTTACATG
GATACTCCAGGTCTGGATGACGTCAATAAACGAAAACAAGCTGCTGAAGC
CATCACCAAGGCTTTGAGAGAGAATGGAAAATATCAAGTCATTTTTGTGG
TCACTTTGGAAGCTGGTCGAGTGAAACCGGCAGATGTGGCAACCATTCAA
TTGATCCTTGAAAGTGCAAAAGAGATAACTCATTATGGTGTCATTTTCAA
CAAGCTGAGCAAGCCAGTAATGAAAAAGCTGACGGCCAAAGACGGCAAGA
TGGCGCTGATCACTCAAGTATCTATTCAACCAGAAAAGGGAAAACCGAAG
CCGCTACCATTTCCTTTGTTTTTGAAGAAAGATGGTGAACTTGAAGATGA
GGATGATGCAGTTGCTGAATTCCCTGAACTGGATACTTTCTTCGGTGGGT
TGCCTTACATTGACATCAAGAAAGAGAACGTCCATGACATCCCAACTGAA
AGTTTTGAAGCTATGAAAAACAAGCTTGAAGATGCGCTTGACCACATGAA
GAAAGATCGAGAGTCCATGAAACGACAAATGGACGAAGATCGAAAAAACT
TCAGACGAACACTTGAAGAAATGAATAGAAAAGAGCAAATGGAGAGAGAG
AGATTCGAAAAGGAGCGGGAAAGATCGGAGAAGAATCATGACAGTCAAAT
GGATATGATGAAAACACAAATTAAAGAAACAAAAGAACAAGCAGCCAAGA
GTGAGGTAGCATCGCAGAAAAGCCATGAAGCTCAGATGAAGAAAGATCAA
CTTGATCATGCGTTGGCAATGAAACAATTGGACCAGGCACATCAAAGAAG
AATGAAACAAATCGATAACAACAAAAGAAGAGGATTCTTCAGCTTTCTAT
TTGGCTGAATGGAGAAGAATGGAAACAATCACAGCGAAACAAGAAGAAAT
CCATCAGGGAATGGTGCCACAAACAGAGAATATGTCTTATTTGCTGGTAA
CCCGGGGAGTGGCAAAAGCACAATCTTGAACTGCTTGATGGCATCAAGAA
GTCCAGACCCTCTTCATGAAAGCCAGAGATTCAAGTCCGGTGTAGCTATT
GCATCAGGGATGACGTACCAACTGGACAAGAAAGAAGTTTGTGGAGTTAC
TTACATGGATACTCCAGGTCTGGATGACGTCAATAAACGAAAACAAGCTG
CTGAAGCCATCACCAAGGCTTTGAGAGAGAATGGAAAATATCAAGTCATT
TTTGTGGTCACTTTGGAAGCTGGTCGAGTGAAACCGGCAGATGTGGCAAC
CATTCAATTGATCCTTGAAAGTGCAAAAGAGATAACTCATTATGGTGTCA
TTTTCAACAAGCTGAGCAAGCCAGTAATGAAAAAGCTGACGGCCAAAGAC
GGCAAGATGGCGCTGATCACTCAAGTATCTATTCAACCAGAAAAGGGAAA
ACCGAAGCCGCTACCATTTCCTTTGTTTTTGAAGAAAGATGGTGAACTTG
AAGATGAGGATGATGCAGTTGCTGAATTCCCTGAACTGGATACTTTCTTC
GGTGGGTTGCCTTACATTGACATCAAGAAAGAGAACGTCCATGACATCCC
AACTGAAAGTTTTGAAGCTATGAAAAACAAGCTTGAAGATGCGCTTGACC
ACATGAAGAAAGATCGAGAGTCCATGAAACGACAAATGGACGAAGATCGA
AAAAACTTCAGACGAACACTTGAAGAAATGAATAGAAAAGAGCAAATGGA
GAGAGAGAGATTCGAAAAGGAGCGGGAAAGATCGGAGAAGAATCATGACA
GTCAAATGGATATGATGAAAACACAAATTAAAGAAACAAAAGAACAAGCA
GCCAAGAGTGAGGTAGCATCGCAGAAAAGCCATGAAGCTCAGATGAAGAA
AGATCAACTTGATCATGCGTTGGCAATGAAACAATTGGACCAGGCACATC
AAAGAAGAATGAAACAAATCGATAACAACAAAAGAAGAGGATTCTTCAGC
TTTCTATTTGGCTGAATGGAGAAGAATGGAAACAATCACAGCGAAACAAG
AAGAAATCCATCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17613MSTRG.17613Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17613.1.p1MSTRG.17613.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17613.1.p1.exon4MSTRG.17613.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17613.1.p1.exon3MSTRG.17613.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17613.1.p1.exon2MSTRG.17613.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17613.1.p1.exon1MSTRG.17613.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000179_pilongenomesc0000179_pilon:525566..531204 -