MSTRG.17600.5.p1 (mRNA) -

Overview
NameMSTRG.17600.5.p1
Unique NameMSTRG.17600.5.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000179_pilon:334746..339016+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17600.5.p1 ID=MSTRG.17600.5.p1|Name=MSTRG.17600.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4271bp|location=Sequence derived from alignment at sc0000179_pilon:334746..339016+ (Clytia hemisphaerica_ch_hm2_pilon)
TTAGGGTATATACCtttttttCACCATAGGGTTCCCTTGCAAAAACACAG
AAATAGAAAGATCAGTCCAATTTTGGGAATAAAACTTTGGGAATAAAAAA
TAGAACATATAACAGTAAGAATTTcggcaacattttttcaaaaattgagc
tGGAACACTCTGGTCATGATTTTACTGAATCATGATTGAAAATTCTGGAA
AATTTAACTTTTTAGGGTAAAAATACCATTTATTTCTAAATAAAACATTG
AAGTTGAAGGACTTGGCAGTTCTATTTCTTTGTTATTATTTGTTTTGGCA
CGTCCAGGATCTAGCTCAGGGTCAATCTCTTTTAATTTGGTAGTGTGAGG
ACAGCCAGTTCTAcaccttcttttcttttgcttCTACATCTTTTTTGTGT
TTATTGTAATAAAATGCTCTGTTTTCAGAAGAGTCAGGCCATTCACTACT
CAAAGGGATGAACTTTATTCTCTACATTAAAATTTTGGCTCAAAAGCAAC
AACATCAAAAGTTAAAGCAGAATAAGCAtttggttggtctttctcatttt
attttaatgtttttactgcctcttgttttgtttttctatgtttgtAAAAC
CAAGATTGGATAATTAGttcaaatcaagaaaatataCACATTAAGTCTAG
GCTAATCATGTCGATATTCAGCTACAATTATCTTTGATACCACCGTATAA
TTATTAATTACctttttttttgtattgtttCAGCAATCTGGACTCAGGTC
AAAGAGTGTTTGAAACCTGTCCTCAAGAAAAAGTCAAGCGGCAAGagtaa
atgtttgaaaaaattcaaagagaAGTTCAAGGTTAGTATATTCATCGTCA
GATAAATTGAATCAGCTATTTATCCCTTGTTTATTTCTTTATGAATTTCT
GCATATTGCagtaaattaactgaaaacaTTCCATTATTTCAATAGaaaga
gatttcaaaaatgattgcaTATGAAAGTATTGAGAACACCCTGGAAAAAG
TTGGAAATGATTGGTCATCTAAGTACAAAGTAAGTGATATTGTCATCTAA
GTACAAAGTAAGTGATATTGCCTTGAGGGtcatttgttttggttaaaagt
GAGATCAATGATGAGttattaattgtttttttcattcttgatattttcta
catttttctAGGTAACCTTAAAGCTTACTTTgaatgaaagtttcaaaaaa
ttagcTGATCTTACAGCTACTGCCGAGGTAAGCTTGGTCTTTTACAGAGT
TTCAGTTCCCTCCATCTGAGTTCTTTAAATCCCCAATCCCCCCTCGCACT
AACAGTTTCCTTTGGGATTCCctccccaggcttggccccctaaaATAAGT
GAAATGtttattgaaaatgctcttGTACTGTATTGTCAAATTGTTTACTC
GTTAAAAACAATGATGAATCTATGCATTTCATCCATTCTTTTTTGTAGGA
CAATACATCGACAAATGATGACACAACTGGTACACCAGAAGAGAAAGATG
ATGAAGTTGAAGATGAAGTAATTTCTTAGTTTCTAGTTCtttttttAAAG
GTCTTTCCAATTTTCAACAGTTACAAGTAGTTTTCGTTACGCTctgttca
aaaaaaaaagggaaagatttttactttacaaaattAGAGGAAATAAGTTC
TAAAATCCTAAAGATGGTGAAATAGTATGATGAGGTTCtatttagtgaaa
ttttttttgggttttatgAAATCCTGATAAAACGATTCTGTATGACGAAG
CAGTAATTGTCAATCAAAACAGCTGTAAGGGATTAGACAGTGTCAGAAGA
TTGCATTGTAAAGAACGGAAGCAATTTTTACAAAGCTGCATCTTCTAAAG
ACTGCCATTGTtggaaatttaaattaaaacttCAATCTTTGCTTATTTGT
ATAGGTATTACACCAGCCCCGCAAAAAGTTCAAGTGGACAATACAGGATG
ATAGTGGGCGAAAGCTCTCAAATgcgaaaaatcaaattaaatggTTAGAA
CATGTCAATAAACAGAAAGATCAAGAAatcaacattttgaaagaaaagaa
tgCATCTTTGTATTTGCGAAATGCACAGTTTACTAAGCTCAAAATTATTG
ATCAAATTGGACAAACCAGATCAACTCTCATGGTTGATGCATCGCTTTTT
ACAAATGCATTTCACGCTGGTGATTTTTTAATGCAACAGCAACAGTCAAC
TCTACTTGATCCAGCAAACTTTGCAGACATTCAGACAACTTTCCTTTGCA
AAGgatctttttttaaaacagatttgataactttttcaaaCAGTGGTGAC
AGGGTGGTTTTAAAACATGactttgatggattttttggtGTTCAGGCGTT
AGCTATTGTGAGCCATGAGCACCGTCTCCTAAAATTTGTTGGTGAACACG
CAAATATTGTCAGTACAATTGGATTGGTGCATTCTTCAAACAGCTTTGGC
CATGTTTTACATTTTGAGCCTGGGCTCAGTCtttcaaaatcattgaaata
ttcaatgactTCCTTGGTTGAATTTAAATGTCTAATACGAGGAATAATGG
AAGGATTGAATTTTCTGTTCGACAGAGGTGTTATCCACAACCATTTGGTT
GCAGATAACATTATATTAAATGGAAACTGTCCTAAGATCATTGGCTTTGC
ATTCGCGTGTCGCGCTGAGAGCGCTAAGCTTAACGTCGTTGACGTAATCA
CCAAGTTTGAGTGTCAATCTCATTTTGCACCCGAGCTGTTCAAATCATCC
AAGGTCAGCTACTCTTCAGATGTTTATTCGTTTGGTACATtgttgaaaat
tgttcttaaacgAAAGATCACTTTCGATTTGGATGATGCATTGGAGACAA
GATTACATACTATTTCagacttttgtttgaaaaaaaagcctGGGGAAAGG
CCTGCtcataaatttcttttaaatcgaATTAATTCTATTCTCGACGCATC
GTAAACCTTTCAATAACTTTAAAAGTTGTTCTCTTCCATGTTTATTTTTG
GGACTATCTATTTGTTAGATTTATTATTAAAGTGTTCATATTCATGATag
tattcatagaattatattttgcaggtctattgacctctacgATATAATGC
TGAGATTTATATGTTGTAGTTTTACAATTGAAAAATAAGCTAATTCTTTT
TCGACAAATTATCGTCGCTGCTGTTAAAGCTAGATGTTTTCGACAGGATT
TGGATGCCAAAATATTTACTCGGTTTTATCAGGCTAAGGCTCTTGCTTCT
AGGATTTCCTCTTAGACGCCAGATGAAGGAGTGCTTCAAGATTTTGTATA
ATTCGTTTTGGACCTACAGTAAGATTTAAAGTATTATTTATTATCGTAGT
TTTATCTCACGCATATATTTTACTTTGTTACTGAGTCTGGGGGTACCTAA
GGAAATGGAGAGAACGTCCCCCTTGTAAGGTTGTCTTTTTGGACACTGAA
GATCTCGCTAGGTTCcttaaaaatcatgaaatctaattcttctcccttaa
aaattattaaaaactaaaaaccctgataaaGCTCCCAATTTTTCGAGCAG
TATCTAGCCGTCATCTCTGCCTGTAAATCGAGTGAGTATTCCTCTAGGAT
TATTTGTCATCGGCTGTCATCACTGTCTTAATGTGtctttaataatattt
ttcattttgttctttGTTAGTGGCTAGTTAGATTGTGGAATAAGTTTTGA
CctttttccaatgttttgacTCATGTCTTCTTGAAGAAAGAACGTGAAAC
CATCACAGAATGATatgaaaaagctaaagagaaaACGAAGAATGAGAAGG
GTTAATGGTGCGTATGTAAAAAGACTGTGATcgataaattgtaaatttaa
atgAAATTGTTTCATACAGGTCAATAGACCTGTGGAATATACTTCtataa
tatattataaattTTGGGCCCAAAAAgaggttttttttcaaattttcaat
aataacGAATTTTGTACATTACCAAGTTTTAGTTTTATACATTCTCTTCT
GAGTAATACTAAGTACTAGTTTATTGTATAAATTAAATGGCAATAAAGGG
GGATCCTTCAAAATGGGTCGGGATCAACATGAAGCTTTCGTTTCAGAGCA
GATTTAATACTTTTTTCAAAGGGGAATTTATACAATAACAGTGTGCTGTT
TGAGTGCTAGGTGATCAAATGGCTCGATTTTTTCTAGGGTTGAAAACTGC
CAAACTTTGGAGACCCAAGGGTGGAGGAGGGTGCCAAAGAAGGGGATTTT
ACCCCAGCTTCTCAATATGAA

Coding sequence (CDS) from alignment at sc0000179_pilon:334746..339016+

>MSTRG.17600.5.p1 ID=MSTRG.17600.5.p1|Name=MSTRG.17600.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5016bp|location=Sequence derived from alignment at sc0000179_pilon:334746..339016+ (Clytia hemisphaerica_ch_hm2_pilon)
atgattgcaTATGAAAGTATTGAGAACACCCTGGAAAAAGTTGGAAATGA
TTGGTCATCTAAGTACAAAGTAACCTTAAAGCTTACTTTgaatgaaagtt
tcaaaaaattagcTGATCTTACAGCTACTGCCGAGGACAATACATCGACA
AATGATGACACAACTGGTACACCAGAAGAGAAAGATGATGAAGTTGAAGA
TGAAGTATTACACCAGCCCCGCAAAAAGTTCAAGTGGACAATACAGGATG
ATAGTGGGCGAAAGCTCTCAAATgcgaaaaatcaaattaaatggTTAGAA
CATGTCAATAAACAGAAAGATCAAGAAatcaacattttgaaagaaaagaa
tgCATCTTTGTATTTGCGAAATGCACAGTTTACTAAGCTCAAAATTATTG
ATCAAATTGGACAAACCAGATCAACTCTCATGGTTGATGCATCGCTTTTT
ACAAATGCATTTCACGCTGGTGATTTTTTAATGCAACAGCAACAGTCAAC
TCTACTTGATCCAGCAAACTTTGCAGACATTCAGACAACTTTCCTTTGCA
AAGgatctttttttaaaacagatttgataactttttcaaaCAGTGGTGAC
AGGGTGGTTTTAAAACATGactttgatggattttttggtGTTCAGGCGTT
AGCTATTGTGAGCCATGAGCACCGTCTCCTAAAATTTGTTGGTGAACACG
CAAATATTGTCAGTACAATTGGATTGGTGCATTCTTCAAACAGCTTTGGC
CATGTTTTACATTTTGAGCCTGGGCTCAGTCtttcaaaatcattgaaata
ttcaatgactTCCTTGGTTGAATTTAAATGTCTAATACGAGGAATAATGG
AAGGATTGAATTTTCTGTTCGACAGAGGTGTTATCCACAACCATTTGGTT
GCAGATAACATTATATTAAATGGAAACTGTCCTAAGATCATTGGCTTTGC
ATTCGCGTGTCGCGCTGAGAGCGCTAAGCTTAACGTCGTTGACGTAATCA
CCAAGTTTGAGTGTCAATCTCATTTTGCACCCGAGCTGTTCAAATCATCC
AAGGTCAGCTACTCTTCAGATGTTTATTCGTTTGGTACATtgttgaaaat
tgttcttaaacgAAAGATCACTTTCGATTTGGATGATGCATTGGAGACAA
GATTACATACTATTTCagacttttgtttgaaaaaaaagcctGGGGAAAGG
CCTGCtcataaatttcttttaaatcgaATTAATTCTATTCTCGACGCATC
GTAAatgattgcaTATGAAAGTATTGAGAACACCCTGGAAAAAGTTGGAA
ATGATTGGTCATCTAAGTACAAAGTAACCTTAAAGCTTACTTTgaatgaa
agtttcaaaaaattagcTGATCTTACAGCTACTGCCGAGGACAATACATC
GACAAATGATGACACAACTGGTACACCAGAAGAGAAAGATGATGAAGTTG
AAGATGAAGTATTACACCAGCCCCGCAAAAAGTTCAAGTGGACAATACAG
GATGATAGTGGGCGAAAGCTCTCAAATgcgaaaaatcaaattaaatggTT
AGAACATGTCAATAAACAGAAAGATCAAGAAatcaacattttgaaagaaa
agaatgCATCTTTGTATTTGCGAAATGCACAGTTTACTAAGCTCAAAATT
ATTGATCAAATTGGACAAACCAGATCAACTCTCATGGTTGATGCATCGCT
TTTTACAAATGCATTTCACGCTGGTGATTTTTTAATGCAACAGCAACAGT
CAACTCTACTTGATCCAGCAAACTTTGCAGACATTCAGACAACTTTCCTT
TGCAAAGgatctttttttaaaacagatttgataactttttcaaaCAGTGG
TGACAGGGTGGTTTTAAAACATGactttgatggattttttggtGTTCAGG
CGTTAGCTATTGTGAGCCATGAGCACCGTCTCCTAAAATTTGTTGGTGAA
CACGCAAATATTGTCAGTACAATTGGATTGGTGCATTCTTCAAACAGCTT
TGGCCATGTTTTACATTTTGAGCCTGGGCTCAGTCtttcaaaatcattga
aatattcaatgactTCCTTGGTTGAATTTAAATGTCTAATACGAGGAATA
ATGGAAGGATTGAATTTTCTGTTCGACAGAGGTGTTATCCACAACCATTT
GGTTGCAGATAACATTATATTAAATGGAAACTGTCCTAAGATCATTGGCT
TTGCATTCGCGTGTCGCGCTGAGAGCGCTAAGCTTAACGTCGTTGACGTA
ATCACCAAGTTTGAGTGTCAATCTCATTTTGCACCCGAGCTGTTCAAATC
ATCCAAGGTCAGCTACTCTTCAGATGTTTATTCGTTTGGTACATtgttga
aaattgttcttaaacgAAAGATCACTTTCGATTTGGATGATGCATTGGAG
ACAAGATTACATACTATTTCagacttttgtttgaaaaaaaagcctGGGGA
AAGGCCTGCtcataaatttcttttaaatcgaATTAATTCTATTCTCGACG
CATCGTAAatgattgcaTATGAAAGTATTGAGAACACCCTGGAAAAAGTT
GGAAATGATTGGTCATCTAAGTACAAAGTAACCTTAAAGCTTACTTTgaa
tgaaagtttcaaaaaattagcTGATCTTACAGCTACTGCCGAGGACAATA
CATCGACAAATGATGACACAACTGGTACACCAGAAGAGAAAGATGATGAA
GTTGAAGATGAAGTATTACACCAGCCCCGCAAAAAGTTCAAGTGGACAAT
ACAGGATGATAGTGGGCGAAAGCTCTCAAATgcgaaaaatcaaattaaat
ggTTAGAACATGTCAATAAACAGAAAGATCAAGAAatcaacattttgaaa
gaaaagaatgCATCTTTGTATTTGCGAAATGCACAGTTTACTAAGCTCAA
AATTATTGATCAAATTGGACAAACCAGATCAACTCTCATGGTTGATGCAT
CGCTTTTTACAAATGCATTTCACGCTGGTGATTTTTTAATGCAACAGCAA
CAGTCAACTCTACTTGATCCAGCAAACTTTGCAGACATTCAGACAACTTT
CCTTTGCAAAGgatctttttttaaaacagatttgataactttttcaaaCA
GTGGTGACAGGGTGGTTTTAAAACATGactttgatggattttttggtGTT
CAGGCGTTAGCTATTGTGAGCCATGAGCACCGTCTCCTAAAATTTGTTGG
TGAACACGCAAATATTGTCAGTACAATTGGATTGGTGCATTCTTCAAACA
GCTTTGGCCATGTTTTACATTTTGAGCCTGGGCTCAGTCtttcaaaatca
ttgaaatattcaatgactTCCTTGGTTGAATTTAAATGTCTAATACGAGG
AATAATGGAAGGATTGAATTTTCTGTTCGACAGAGGTGTTATCCACAACC
ATTTGGTTGCAGATAACATTATATTAAATGGAAACTGTCCTAAGATCATT
GGCTTTGCATTCGCGTGTCGCGCTGAGAGCGCTAAGCTTAACGTCGTTGA
CGTAATCACCAAGTTTGAGTGTCAATCTCATTTTGCACCCGAGCTGTTCA
AATCATCCAAGGTCAGCTACTCTTCAGATGTTTATTCGTTTGGTACATtg
ttgaaaattgttcttaaacgAAAGATCACTTTCGATTTGGATGATGCATT
GGAGACAAGATTACATACTATTTCagacttttgtttgaaaaaaaagcctG
GGGAAAGGCCTGCtcataaatttcttttaaatcgaATTAATTCTATTCTC
GACGCATCGTAAatgattgcaTATGAAAGTATTGAGAACACCCTGGAAAA
AGTTGGAAATGATTGGTCATCTAAGTACAAAGTAACCTTAAAGCTTACTT
TgaatgaaagtttcaaaaaattagcTGATCTTACAGCTACTGCCGAGGAC
AATACATCGACAAATGATGACACAACTGGTACACCAGAAGAGAAAGATGA
TGAAGTTGAAGATGAAGTATTACACCAGCCCCGCAAAAAGTTCAAGTGGA
CAATACAGGATGATAGTGGGCGAAAGCTCTCAAATgcgaaaaatcaaatt
aaatggTTAGAACATGTCAATAAACAGAAAGATCAAGAAatcaacatttt
gaaagaaaagaatgCATCTTTGTATTTGCGAAATGCACAGTTTACTAAGC
TCAAAATTATTGATCAAATTGGACAAACCAGATCAACTCTCATGGTTGAT
GCATCGCTTTTTACAAATGCATTTCACGCTGGTGATTTTTTAATGCAACA
GCAACAGTCAACTCTACTTGATCCAGCAAACTTTGCAGACATTCAGACAA
CTTTCCTTTGCAAAGgatctttttttaaaacagatttgataactttttca
aaCAGTGGTGACAGGGTGGTTTTAAAACATGactttgatggattttttgg
tGTTCAGGCGTTAGCTATTGTGAGCCATGAGCACCGTCTCCTAAAATTTG
TTGGTGAACACGCAAATATTGTCAGTACAATTGGATTGGTGCATTCTTCA
AACAGCTTTGGCCATGTTTTACATTTTGAGCCTGGGCTCAGTCtttcaaa
atcattgaaatattcaatgactTCCTTGGTTGAATTTAAATGTCTAATAC
GAGGAATAATGGAAGGATTGAATTTTCTGTTCGACAGAGGTGTTATCCAC
AACCATTTGGTTGCAGATAACATTATATTAAATGGAAACTGTCCTAAGAT
CATTGGCTTTGCATTCGCGTGTCGCGCTGAGAGCGCTAAGCTTAACGTCG
TTGACGTAATCACCAAGTTTGAGTGTCAATCTCATTTTGCACCCGAGCTG
TTCAAATCATCCAAGGTCAGCTACTCTTCAGATGTTTATTCGTTTGGTAC
ATtgttgaaaattgttcttaaacgAAAGATCACTTTCGATTTGGATGATG
CATTGGAGACAAGATTACATACTATTTCagacttttgtttgaaaaaaaag
cctGGGGAAAGGCCTGCtcataaatttcttttaaatcgaATTAATTCTAT
TCTCGACGCATCGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17600MSTRG.17600Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17600.5.p1MSTRG.17600.5.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17600.5.p1.exon1MSTRG.17600.5.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17600.5.p1.exon2MSTRG.17600.5.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17600.5.p1.exon3MSTRG.17600.5.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17600.5.p1.exon4MSTRG.17600.5.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17600.5.p1.exon5MSTRG.17600.5.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17600.5.p1.exon6MSTRG.17600.5.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000179_pilongenomesc0000179_pilon:334746..339016 +