MSTRG.17600.4.p1 (mRNA) -

Overview
NameMSTRG.17600.4.p1
Unique NameMSTRG.17600.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000179_pilon:333279..339016+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17600.4.p1 ID=MSTRG.17600.4.p1|Name=MSTRG.17600.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5738bp|location=Sequence derived from alignment at sc0000179_pilon:333279..339016+ (Clytia hemisphaerica_ch_hm2_pilon)
GGTTTTGGTCTCCTGTTTGGGAAGTTGTAATGTTTTCAATGGAAAAGTGT
AAGAAACTTTTGTTTATAAGCATGTCATTTACTTTTTCATTGACAGGATA
TTGGCATGATTCGAATGGTTTCCCTCAGTTTCCCTAGCTCTCATAATGTt
tcgaaaattgctaaaaaatagGTATTCAACGCCAGAGAACcaatcaagta
tataatattgcatatctatcaaatcaatcaatccaaattaaatgcaatca
aataCAATTAAATATTACACAGGAATTGACCATTCAATTAGAGAGCtttg
acaaaagattttcttttttttaacagCTTGATGCTGTTAAGAAGGGGAGT
GGTATAGCAGGTCTGTCGATaaaaaaagtcagaaagaaaaagaaattctc
atttagattgaaacatttataaatcAGCTTGAAATTTCCCAATCGACTTC
TTCGAAGTGTCTTGTTCCCAAAAAGCGTGACAAAAATAATCTGTGTATGT
CAGCAGCGGTCactttgaataaattttggGTATTAGAATTGGAGGCCCGG
CTCAAAACAACATGTCCTCTGTGCAAAAGGAATTGCGTCAAATATGGCGA
AGTGAAAGAATATAAAAAGAACATTGTTCTTCATGGTTGGGTCATATCCT
TTAGATGACAtattaaaacttttcaaagtgaaatttgctaaaagattttt
tcaagctgttaatgaaaaataaaatcttttgtcgaAGGCCTCTTATGGTT
GAcaatagcctgggaatccaatcGTCAAACTTTGTTCACATTCCAGATTT
GTGATGTTTTTGTTAATAATATTTGACGCTTGGAAGAAGCAACTCGATTG
CAGGGATTCCAGCACAGCTGGTGTAGGACAGAGTCCTGGTGGGAGAAGTC
CCAAGAAAATTATGCCTTTTTGCGTAATTGAATGCTTATAATATAAATGC
TTATAAtatatttgaaaacatttttcactcaattttcttttttccaaatt
tatgtTACATAAAGATTGAGTTCCAAATCTAAAATCTCAAAGATTCAGAA
AACCCTAAAAATATGCCTCAGGAGTGCTTAATTAACCATTATGGATTTAC
AACGGGTGAATTTTTTGCAAAGATCTTTCCACATCTTCAGAATCATACTG
TATACTGTATTCATAAAGGCCTTTCTACATCTTCCTAAGAAGGCTTTATT
AATTAATACCCactcaagaaaaaatattgcaACTTAAATCTCTCGCAGTT
CAGCGCAGTTCtgttaagttttgaaaaaaaattccaaatttggAAAGATG
GAATTTCCACTTGGTTAAAAAATTCTTACGCATCTCTCCACATTGAATTT
AGAATGGAtgcaaaatgaatttatttctgatttctcCATGATAATCTTCT
AGTCATGGAGACTTACCAGGGTTGGTACTTGGGCAAAAGGGGTATATATA
CAGGAATGTGCCACTGGTTAGGGTATATACCtttttttCACCATAGGGTT
CCCTTGCAAAAACACAGAAATAGAAAGATCAGTCCAATTTTGGGAATAAA
ACTTTGGGAATAAAAAATAGAACATATAACAGTAAGAATTTcggcaacat
tttttcaaaaattgagctGGAACACTCTGGTCATGATTTTACTGAATCAT
GATTGAAAATTCTGGAAAATTTAACTTTTTAGGGTAAAAATACCATTTAT
TTCTAAATAAAACATTGAAGTTGAAGGACTTGGCAGTTCTATTTCTTTGT
TATTATTTGTTTTGGCACGTCCAGGATCTAGCTCAGGGTCAATCTCTTTT
AATTTGGTAGTGTGAGGACAGCCAGTTCTAcaccttcttttcttttgctt
CTACATCTTTTTTGTGTTTATTGTAATAAAATGCTCTGTTTTCAGAAGAG
TCAGGCCATTCACTACTCAAAGGGATGAACTTTATTCTCTACATTAAAAT
TTTGGCTCAAAAGCAACAACATCAAAAGTTAAAGCAGAATAAGCAtttgg
ttggtctttctcattttattttaatgtttttactgcctcttgttttgttt
ttctatgtttgtAAAACCAAGATTGGATAATTAGttcaaatcaagaaaat
ataCACATTAAGTCTAGGCTAATCATGTCGATATTCAGCTACAATTATCT
TTGATACCACCGTATAATTATTAATTACctttttttttgtattgtttCAG
CAATCTGGACTCAGGTCAAAGAGTGTTTGAAACCTGTCCTCAAGAAAAAG
TCAAGCGGCAAGagtaaatgtttgaaaaaattcaaagagaAGTTCAAGGT
TAGTATATTCATCGTCAGATAAATTGAATCAGCTATTTATCCCTTGTTTA
TTTCTTTATGAATTTCTGCATATTGCagtaaattaactgaaaacaTTCCA
TTATTTCAATAGaaagagatttcaaaaatgattgcaTATGAAAGTATTGA
GAACACCCTGGAAAAAGTTGGAAATGATTGGTCATCTAAGTACAAAGTAA
GTGATATTGTCATCTAAGTACAAAGTAAGTGATATTGCCTTGAGGGtcat
ttgttttggttaaaagtGAGATCAATGATGAGttattaattgtttttttc
attcttgatattttctacatttttctAGGTAACCTTAAAGCTTACTTTga
atgaaagtttcaaaaaattagcTGATCTTACAGCTACTGCCGAGGTAAGC
TTGGTCTTTTACAGAGTTTCAGTTCCCTCCATCTGAGTTCTTTAAATCCC
CAATCCCCCCTCGCACTAACAGTTTCCTTTGGGATTCCctccccaggctt
ggccccctaaaATAAGTGAAATGtttattgaaaatgctcttGTACTGTAT
TGTCAAATTGTTTACTCGTTAAAAACAATGATGAATCTATGCATTTCATC
CATTCTTTTTTGTAGGACAATACATCGACAAATGATGACACAACTGGTAC
ACCAGAAGAGAAAGATGATGAAGTTGAAGATGAAGTAATTTCTTAGTTTC
TAGTTCtttttttAAAGGTCTTTCCAATTTTCAACAGTTACAAGTAGTTT
TCGTTACGCTctgttcaaaaaaaaaagggaaagatttttactttacaaaa
ttAGAGGAAATAAGTTCTAAAATCCTAAAGATGGTGAAATAGTATGATGA
GGTTCtatttagtgaaattttttttgggttttatgAAATCCTGATAAAAC
GATTCTGTATGACGAAGCAGTAATTGTCAATCAAAACAGCTGTAAGGGAT
TAGACAGTGTCAGAAGATTGCATTGTAAAGAACGGAAGCAATTTTTACAA
AGCTGCATCTTCTAAAGACTGCCATTGTtggaaatttaaattaaaacttC
AATCTTTGCTTATTTGTATAGGTATTACACCAGCCCCGCAAAAAGTTCAA
GTGGACAATACAGGATGATAGTGGGCGAAAGCTCTCAAATgcgaaaaatc
aaattaaatggTTAGAACATGTCAATAAACAGAAAGATCAAGAAatcaac
attttgaaagaaaagaatgCATCTTTGTATTTGCGAAATGCACAGTTTAC
TAAGCTCAAAATTATTGATCAAATTGGACAAACCAGATCAACTCTCATGG
TTGATGCATCGCTTTTTACAAATGCATTTCACGCTGGTGATTTTTTAATG
CAACAGCAACAGTCAACTCTACTTGATCCAGCAAACTTTGCAGACATTCA
GACAACTTTCCTTTGCAAAGgatctttttttaaaacagatttgataactt
tttcaaaCAGTGGTGACAGGGTGGTTTTAAAACATGactttgatggattt
tttggtGTTCAGGCGTTAGCTATTGTGAGCCATGAGCACCGTCTCCTAAA
ATTTGTTGGTGAACACGCAAATATTGTCAGTACAATTGGATTGGTGCATT
CTTCAAACAGCTTTGGCCATGTTTTACATTTTGAGCCTGGGCTCAGTCtt
tcaaaatcattgaaatattcaatgactTCCTTGGTTGAATTTAAATGTCT
AATACGAGGAATAATGGAAGGATTGAATTTTCTGTTCGACAGAGGTGTTA
TCCACAACCATTTGGTTGCAGATAACATTATATTAAATGGAAACTGTCCT
AAGATCATTGGCTTTGCATTCGCGTGTCGCGCTGAGAGCGCTAAGCTTAA
CGTCGTTGACGTAATCACCAAGTTTGAGTGTCAATCTCATTTTGCACCCG
AGCTGTTCAAATCATCCAAGGTCAGCTACTCTTCAGATGTTTATTCGTTT
GGTACATtgttgaaaattgttcttaaacgAAAGATCACTTTCGATTTGGA
TGATGCATTGGAGACAAGATTACATACTATTTCagacttttgtttgaaaa
aaaagcctGGGGAAAGGCCTGCtcataaatttcttttaaatcgaATTAAT
TCTATTCTCGACGCATCGTAAACCTTTCAATAACTTTAAAAGTTGTTCTC
TTCCATGTTTATTTTTGGGACTATCTATTTGTTAGATTTATTATTAAAGT
GTTCATATTCATGATagtattcatagaattatattttgcaggtctattga
cctctacgATATAATGCTGAGATTTATATGTTGTAGTTTTACAATTGAAA
AATAAGCTAATTCTTTTTCGACAAATTATCGTCGCTGCTGTTAAAGCTAG
ATGTTTTCGACAGGATTTGGATGCCAAAATATTTACTCGGTTTTATCAGG
CTAAGGCTCTTGCTTCTAGGATTTCCTCTTAGACGCCAGATGAAGGAGTG
CTTCAAGATTTTGTATAATTCGTTTTGGACCTACAGTAAGATTTAAAGTA
TTATTTATTATCGTAGTTTTATCTCACGCATATATTTTACTTTGTTACTG
AGTCTGGGGGTACCTAAGGAAATGGAGAGAACGTCCCCCTTGTAAGGTTG
TCTTTTTGGACACTGAAGATCTCGCTAGGTTCcttaaaaatcatgaaatc
taattcttctcccttaaaaattattaaaaactaaaaaccctgataaaGCT
CCCAATTTTTCGAGCAGTATCTAGCCGTCATCTCTGCCTGTAAATCGAGT
GAGTATTCCTCTAGGATTATTTGTCATCGGCTGTCATCACTGTCTTAATG
TGtctttaataatatttttcattttgttctttGTTAGTGGCTAGTTAGAT
TGTGGAATAAGTTTTGACctttttccaatgttttgacTCATGTCTTCTTG
AAGAAAGAACGTGAAACCATCACAGAATGATatgaaaaagctaaagagaa
aACGAAGAATGAGAAGGGTTAATGGTGCGTATGTAAAAAGACTGTGATcg
ataaattgtaaatttaaatgAAATTGTTTCATACAGGTCAATAGACCTGT
GGAATATACTTCtataatatattataaattTTGGGCCCAAAAAgaggttt
tttttcaaattttcaataataacGAATTTTGTACATTACCAAGTTTTAGT
TTTATACATTCTCTTCTGAGTAATACTAAGTACTAGTTTATTGTATAAAT
TAAATGGCAATAAAGGGGGATCCTTCAAAATGGGTCGGGATCAACATGAA
GCTTTCGTTTCAGAGCAGATTTAATACTTTTTTCAAAGGGGAATTTATAC
AATAACAGTGTGCTGTTTGAGTGCTAGGTGATCAAATGGCTCGATTTTTT
CTAGGGTTGAAAACTGCCAAACTTTGGAGACCCAAGGGTGGAGGAGGGTG
CCAAAGAAGGGGATTTTACCCCAGCTTCTCAATATGAA

Coding sequence (CDS) from alignment at sc0000179_pilon:333279..339016+

>MSTRG.17600.4.p1 ID=MSTRG.17600.4.p1|Name=MSTRG.17600.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3564bp|location=Sequence derived from alignment at sc0000179_pilon:333279..339016+ (Clytia hemisphaerica_ch_hm2_pilon)
atgattgcaTATGAAAGTATTGAGAACACCCTGGAAAAAGTTGGAAATGA
TTGGTCATCTAAGTACAAAGACAATACATCGACAAATGATGACACAACTG
GTACACCAGAAGAGAAAGATGATGAAGTTGAAGATGAAGTATTACACCAG
CCCCGCAAAAAGTTCAAGTGGACAATACAGGATGATAGTGGGCGAAAGCT
CTCAAATgcgaaaaatcaaattaaatggTTAGAACATGTCAATAAACAGA
AAGATCAAGAAatcaacattttgaaagaaaagaatgCATCTTTGTATTTG
CGAAATGCACAGTTTACTAAGCTCAAAATTATTGATCAAATTGGACAAAC
CAGATCAACTCTCATGGTTGATGCATCGCTTTTTACAAATGCATTTCACG
CTGGTGATTTTTTAATGCAACAGCAACAGTCAACTCTACTTGATCCAGCA
AACTTTGCAGACATTCAGACAACTTTCCTTTGCAAAGgatctttttttaa
aacagatttgataactttttcaaaCAGTGGTGACAGGGTGGTTTTAAAAC
ATGactttgatggattttttggtGTTCAGGCGTTAGCTATTGTGAGCCAT
GAGCACCGTCTCCTAAAATTTGTTGGTGAACACGCAAATATTGTCAGTAC
AATTGGATTGGTGCATTCTTCAAACAGCTTTGGCCATGTTTTACATTTTG
AGCCTGGGCTCAGTCtttcaaaatcattgaaatattcaatgactTCCTTG
GTTGAATTTAAATGTCTAATACGAGGAATAATGGAAGGATTGAATTTTCT
GTTCGACAGAGGTGTTATCCACAACCATTTGGTTGCAGATAACATTATAT
TAAATGGAAACTGTCCTAAGATCATTGGCTTTGCATTCGCGTGTCGCGCT
GAGAGCGCTAAGCTTAACGTCGTTGACGTAATCACCAAGTTTGAGTGTCA
ATCTCATTTTGCACCCGAGCTGTTCAAATCATCCAAGGTCAGCTACTCTT
CAGATGTTTATTCGTTTGGTACATtgttgaaaattgttcttaaacgAAAG
ATCACTTTCGATTTGGATGATGCATTGGAGACAAGATTACATACTATTTC
agacttttgtttgaaaaaaaagcctGGGGAAAGGCCTGCtcataaatttc
ttttaaatcgaATTAATTCTATTCTCGACGCATCGTAAatgattgcaTAT
GAAAGTATTGAGAACACCCTGGAAAAAGTTGGAAATGATTGGTCATCTAA
GTACAAAGACAATACATCGACAAATGATGACACAACTGGTACACCAGAAG
AGAAAGATGATGAAGTTGAAGATGAAGTATTACACCAGCCCCGCAAAAAG
TTCAAGTGGACAATACAGGATGATAGTGGGCGAAAGCTCTCAAATgcgaa
aaatcaaattaaatggTTAGAACATGTCAATAAACAGAAAGATCAAGAAa
tcaacattttgaaagaaaagaatgCATCTTTGTATTTGCGAAATGCACAG
TTTACTAAGCTCAAAATTATTGATCAAATTGGACAAACCAGATCAACTCT
CATGGTTGATGCATCGCTTTTTACAAATGCATTTCACGCTGGTGATTTTT
TAATGCAACAGCAACAGTCAACTCTACTTGATCCAGCAAACTTTGCAGAC
ATTCAGACAACTTTCCTTTGCAAAGgatctttttttaaaacagatttgat
aactttttcaaaCAGTGGTGACAGGGTGGTTTTAAAACATGactttgatg
gattttttggtGTTCAGGCGTTAGCTATTGTGAGCCATGAGCACCGTCTC
CTAAAATTTGTTGGTGAACACGCAAATATTGTCAGTACAATTGGATTGGT
GCATTCTTCAAACAGCTTTGGCCATGTTTTACATTTTGAGCCTGGGCTCA
GTCtttcaaaatcattgaaatattcaatgactTCCTTGGTTGAATTTAAA
TGTCTAATACGAGGAATAATGGAAGGATTGAATTTTCTGTTCGACAGAGG
TGTTATCCACAACCATTTGGTTGCAGATAACATTATATTAAATGGAAACT
GTCCTAAGATCATTGGCTTTGCATTCGCGTGTCGCGCTGAGAGCGCTAAG
CTTAACGTCGTTGACGTAATCACCAAGTTTGAGTGTCAATCTCATTTTGC
ACCCGAGCTGTTCAAATCATCCAAGGTCAGCTACTCTTCAGATGTTTATT
CGTTTGGTACATtgttgaaaattgttcttaaacgAAAGATCACTTTCGAT
TTGGATGATGCATTGGAGACAAGATTACATACTATTTCagacttttgttt
gaaaaaaaagcctGGGGAAAGGCCTGCtcataaatttcttttaaatcgaA
TTAATTCTATTCTCGACGCATCGTAAatgattgcaTATGAAAGTATTGAG
AACACCCTGGAAAAAGTTGGAAATGATTGGTCATCTAAGTACAAAGACAA
TACATCGACAAATGATGACACAACTGGTACACCAGAAGAGAAAGATGATG
AAGTTGAAGATGAAGTATTACACCAGCCCCGCAAAAAGTTCAAGTGGACA
ATACAGGATGATAGTGGGCGAAAGCTCTCAAATgcgaaaaatcaaattaa
atggTTAGAACATGTCAATAAACAGAAAGATCAAGAAatcaacattttga
aagaaaagaatgCATCTTTGTATTTGCGAAATGCACAGTTTACTAAGCTC
AAAATTATTGATCAAATTGGACAAACCAGATCAACTCTCATGGTTGATGC
ATCGCTTTTTACAAATGCATTTCACGCTGGTGATTTTTTAATGCAACAGC
AACAGTCAACTCTACTTGATCCAGCAAACTTTGCAGACATTCAGACAACT
TTCCTTTGCAAAGgatctttttttaaaacagatttgataactttttcaaa
CAGTGGTGACAGGGTGGTTTTAAAACATGactttgatggattttttggtG
TTCAGGCGTTAGCTATTGTGAGCCATGAGCACCGTCTCCTAAAATTTGTT
GGTGAACACGCAAATATTGTCAGTACAATTGGATTGGTGCATTCTTCAAA
CAGCTTTGGCCATGTTTTACATTTTGAGCCTGGGCTCAGTCtttcaaaat
cattgaaatattcaatgactTCCTTGGTTGAATTTAAATGTCTAATACGA
GGAATAATGGAAGGATTGAATTTTCTGTTCGACAGAGGTGTTATCCACAA
CCATTTGGTTGCAGATAACATTATATTAAATGGAAACTGTCCTAAGATCA
TTGGCTTTGCATTCGCGTGTCGCGCTGAGAGCGCTAAGCTTAACGTCGTT
GACGTAATCACCAAGTTTGAGTGTCAATCTCATTTTGCACCCGAGCTGTT
CAAATCATCCAAGGTCAGCTACTCTTCAGATGTTTATTCGTTTGGTACAT
tgttgaaaattgttcttaaacgAAAGATCACTTTCGATTTGGATGATGCA
TTGGAGACAAGATTACATACTATTTCagacttttgtttgaaaaaaaagcc
tGGGGAAAGGCCTGCtcataaatttcttttaaatcgaATTAATTCTATTC
TCGACGCATCGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17600MSTRG.17600Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17600.4.p1MSTRG.17600.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17600.4.p1.exon1MSTRG.17600.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17600.4.p1.exon2MSTRG.17600.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17600.4.p1.exon3MSTRG.17600.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17600.4.p1.exon4MSTRG.17600.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17600.4.p1.exon5MSTRG.17600.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000179_pilongenomesc0000179_pilon:333279..339016 +