MSTRG.17592.1.p1 (mRNA) -

Overview
NameMSTRG.17592.1.p1
Unique NameMSTRG.17592.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000179_pilon:121190..125497-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17592.1.p1 ID=MSTRG.17592.1.p1|Name=MSTRG.17592.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4308bp|location=Sequence derived from alignment at sc0000179_pilon:121190..125497- (Clytia hemisphaerica_ch_hm2_pilon)
AAAATCTCTGAATAAAAAAGAATACTTATTTGGGTCAGGAAAATAGACTA
TCATCGCGCCGCTTTTCAAAACAAAAACAAATTTGAGATCTAAAAAACAG
AATCAGAAATAGAGAATATTGAGAAAATGGAGCCTAAAGCGAAGTGGAGA
AGAACTGACATAAGAAAGTGCAATTGCCCAGCTTTGACAAAAGAACATGT
TCATTGTCCTTGTATTGGATGCCAACATACTGCAGTAAGTAGAAGAACGG
AATTAAGGCATTGGCAACAACATGAGAAAATATTTCAAGATGATCATGAC
CAAGACGCGCAGATTGTTGAAACCGACAATGATGTTGATGATAGTGACAG
TGACAATTTATTAAATAAGACTGCATCTGCCAACTCCTCTCCCAGCAGTG
TTATTAGCAGCAGTGTCTCAACAGCATCAGCCGAGAGTTTCAGTATAAAC
CACCAGCTGCAAGGCGATGATGAGCCCCATCATAAAACCTCCAGTAGTAG
TATTATTAGTGATGGTGATGTTGATAATAATGGACCTAATAATGATGAAA
ATGACCACAGTAATCAAGACTTTGACCCAGAAACGGAAATAGATGCAAAT
GATGGTGATAACGATAACATGTATGTATAAAGAGGCGGTGGGCCATATAT
TTAAAAATTGTTCTGTTTTTTAATAAAAATACTTGTGCACATTTTAATAA
TGTTCTCTAAGATTTCATTGAAGAAGTTGATTTTCTTCTTATTCATTGGT
ACTTCATCTTCATTTTCCAATATTTTTTGAGTTTTTTTTTTTATGATGAT
ATTGGGCCATTCCAGAAAATTTTTGTTGCCCCCCCCCTGCGTCGGACAAC
ATGCATTTTTAATTCTTTTATAGCCTCAAAAATAATTTTTCTTTTCCAGT
GGTGGTCGGAAATTCCCATAAAAATCCATGTACTTTTGCAAAATGCATCG
GAAATACCACTCTTTTTTTGCCTTTTTTAATTCGATTGCCTTGGAAATTC
ATACATTTTCTTCTCTCGCCTTGGAAATTTCGAATTTTGGTGAAAACTTT
TGCCCTCGGAAATCCTGTGTTGTCCGCCCCCCCCCCCTATTACAGACAAA
TTCTGGAATGGTCCATTCCACTCTTGTTTATTTTTTCAACAAGCACAAAA
CTGCTATCTAATTCGAATTATATGTCAAAAGTTTTTTAATTAATGTTAAC
GTCATATAATTGATCCGTCTTTTACAAAGGTACAAGATAATTTATCTCGT
TTGTACAGACTGTACTTCACCACTTTCTCCCAAACGAATTTTTTTGATTT
CATTTTTTAGAAATGGAATGATTTTGAAATATTTGATCTTGATCATGGAC
TTAGCAATGAAGATGAATGCCTCTAATGCTCAGACAGAAGACCTGCTTGC
TTTTGTTAACCAAATGTTTGGAGATTTCAGCCCAGATTTACAGTCAAAAT
AGCCACTCTCATATTATAAAGCTATACATGCAATGAAATCCTCTAGTTTA
TATTCTGATCCAGTTGAACACGCTATATGTTTCAATGAAAAGGAGCACCA
GATACATTGGTACCAGATGAATCCAGATGAATCCTGTCCAGATTGTGATG
AAACTCCACCTATTAAACGTTACTATCTCCCATTAAAAGAAAAATTAATG
CGCTGGTTTCAATCTGAAGAAATGTGCACAGCCATGCTTGGTCATTGGAA
GAATCGAGACAGGTGGCTTGGAAAGGAAGGGCCAACTTTTCCCCTAAAAG
AGATATGGGACGGAACAAGGTTCAAAGAGATCCAGTGTTTTTTTGATCCA
CTGTCAAAGTGGCCTTTGCCTCACACTTGTAAAAAATGTGAGCATAAAAC
TATTCTCCAGAATGTCGTGGATGAGGATGAGGTTGAAGTAACGTGTCCTA
ACTGTGGATTGTTTGCTGTCATTCAACCAGAATTTTGTCATGGAGATCCT
CGTAACATTGTTTTTATTGGACACTGGGATGGCTGGCAACCAAAGGTTGG
AAGAAGAAGGGCCAAAAGCTCTGGTGAGAATTGATATTTTAACTTATGCT
TAGCATATGCTTTTAAATGTTTCTCATATCCAAGCCTAGATATGATTTTA
GGTGCAATGTTTATAAAGAAAAAAGCACTTAATTTGCAGATTTTTGTTGT
ATTTGTCTAATTCATTTGATCCAGAATTTATCTCTCCTTAACCCTATTTT
TATCAGGGGGGGGGGTGTTTTCCACCAGGCTTGCACTCTTTTGCTAATAG
CTCACTGAAAAAAAAATTTAACACTCTGAAAAATTTTAACTTTTAATATA
ATTCTATTAGCACCATGTATACCAAGTTTTACAATTATACACCGACCAGA
TCAGGTTTTATGTCTTTTTTGTGCACGCATATCATAAAATCCAGCTAAAA
CCCTGTAAAATCCCAAAATCTTAAATTTAGCATAACTTTTGATCTAGGCA
TCCAACTGACTTCAAATTTTGACAGGTTTTAGGTATCAATAATATATTTT
AAAAAATATTTAAAATTTTTTCAAAAACTGCTGACGTCATCACAAATGAC
GTCATTGTTTTTTGAAAAGATTTACTCATTTTCTGCATAGATTTTAAACC
TCAATTTTATTAGTATGTTAAAAACCGGCAAACATGTTAAAGATATTCGT
TTTGGCTTTTAGAAATTCAAAACAGAATGAAAAAATCTTCATTCGTTCAA
CTTTAATTGCTATTTTATTGAATAGTTCTTTTTCATTGGTCAGCGATAAT
TGTGAAACTTTGTGATGACGTCATCACCTTTATGATGACGTCATCACCTT
TATAATGACGTCATCACCTTTATAATGACGTCATCAACCTAAATTTTTTT
CTATGAACTCCTTTTATGGTAGAGAACATCTCTGCCAAATTTCAAGTCCA
TATCTTTTCTAGATCAAAAGTTATGCAATGCTGGTGGAAAACACCCCCCC
CCCCTTGAGAATACAAAATCCGAAAAAGCCTGATAATAATAGGGTTAAAT
GATGAATATTAATATTGATGAATTTTCAAAAATCTAATAATTCAAATACT
TTCTTCCTATTAAATTTCTACAAAAGGGTTAAGTTAAACACTTCTTCTGA
TTTGGTCTCCCTAATCCTCTGATTAGTATTGAATAAAAAAGTCGTTCTTT
TTTCGTTTCTTTTTAAGGAACTATTGATTTGACAATCGCAAACATTGAAA
AAGAAGAGAGATGTAAAACAAAACACATGTATGTGTCACCTTTTGTGCCT
GAGCACAAACTACCCAAGAAACAGCCACTTGTCCTGGATCCTTTTCTACA
GCCAATATTGGATGAACTTGAAGACTTGTTCATAAATGGTTAGTTTAAAA
TTCTGAATATTCGCCATAAAACTGTAATTTTTACCCTGACTATTATTTTT
TTTGACAGTGTCCTTTACAATAAACTTACTGTTACTGTAAACACTTTAAT
TTTTCTTGAATAATACAAACCAGAAGAAAAGGTTCAAAATTAGAGAAATT
TAAAACATAAGTATTTTTAATGAATGATTGCAGGTTAGGTTACAATTCGA
AACCCTTTTTTATTTAGGTATTGAGATTATGTATCCTTTTGAAGTATATG
ATAATGTTGTGCCACCAGGAAGGTGTGTCATTAGATGCATGCTGTTATGT
TGGACTGGAGATTATCCAGCCCAGTGTCAGGTTGGAAAATTCTCCAAGAT
GGGAATTTCTGGTTGCACAGTTGATCATTGTAAAGGTAAAAGATTTTTAT
AATTTTTTTTTCATGCCTCGTCAAGATTATGAAACTATATTGGAACTGGA
GAGCTCTGTAATTTTAGGTTACTAAAATAATAGTTTTTAATTATTATTTT
TTTCAATTTTCATTTAACGAGGCGTTGCTATTATTAACCAAATTTGCAAA
TTTTGAACTGTTTAATTTTATTTTTACTTCATTCTATTTTAGGAATTTCT
CTTACTGATGGTGGGACTACCAAGTATTATGTAAACAATCGGGAACATCA
TACAAACCCATGGCCAAAGCGAGAAATAACCACTGAAATCAAAGTAATGG
AAAGAGTTGAATTTCAACCAAGTACCCAAGCAAAATTACGATTAGTTACA
ACCACTGGTTATTCTGGCATGACACTTTTAACACGAATGACAAACTTGTA
TGGCTTTAATCCCTTCACTGACATGGTTCACGACAGCATGCATTTAGTAC
TTCTCAACCTATGTCGAAAGCTGTTTAGTAGAATATTTGGAGATGAGCGT
TTTATCCCAGATACATCAGAATTCAATCAAAAACTTGTTGACTTTCCATT
CACTTCAG

Coding sequence (CDS) from alignment at sc0000179_pilon:121190..125497-

>MSTRG.17592.1.p1 ID=MSTRG.17592.1.p1|Name=MSTRG.17592.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4980bp|location=Sequence derived from alignment at sc0000179_pilon:121190..125497- (Clytia hemisphaerica_ch_hm2_pilon)
GAATTTCTCTTACTGATGGTGGGACTACCAAGTATTATGTAAACAATCGG
GAACATCATACAAACCCATGGCCAAAGCGAGAAATAACCACTGAAATCAA
AGTAATGGAAAGAGTTGAATTTCAACCAAGTACCCAAGCAAAATTACGAT
TAGTTACAACCACTGGTTATTCTGGCATGACACTTTTAACACGAATGACA
AACTTGTATGGCTTTAATCCCTTCACTGACATGGTTCACGACAGCATGCA
TTTAGTACTTCTCAACCTATGTCGAAAGCTGTTTAGTAGAATATTTGGAG
ATGAGCGTTTTATCCCAGATACATCAGAATTCAATCAAAAACTTGTTGAC
TTTCCATTCACTTCAGTATTGAGATTATGTATCCTTTTGAAGTATATGAT
AATGTTGTGCCACCAGGAAGGTGTGTCATTAGATGCATGCTGTTATGTTG
GACTGGAGATTATCCAGCCCAGTGTCAGGTTGGAAAATTCTCCAAGATGG
GAATTTCTGGTTGCACAGTTGATCATTGTAAAGGAACTATTGATTTGACA
ATCGCAAACATTGAAAAAGAAGAGAGATGTAAAACAAAACACATGTATGT
GTCACCTTTTGTGCCTGAGCACAAACTACCCAAGAAACAGCCACTTGTCC
TGGATCCTTTTCTACAGCCAATATTGGATGAACTTGAAGACTTGTTCATA
AATGATGAAATCCTCTAGTTTATATTCTGATCCAGTTGAACACGCTATAT
GTTTCAATGAAAAGGAGCACCAGATACATTGGTACCAGATGAATCCAGAT
GAATCCTGTCCAGATTGTGATGAAACTCCACCTATTAAACGTTACTATCT
CCCATTAAAAGAAAAATTAATGCGCTGGTTTCAATCTGAAGAAATGTGCA
CAGCCATGCTTGGTCATTGGAAGAATCGAGACAGGTGGCTTGGAAAGGAA
GGGCCAACTTTTCCCCTAAAAGAGATATGGGACGGAACAAGGTTCAAAGA
GATCCAGTGTTTTTTTGATCCACTGTCAAAGTGGCCTTTGCCTCACACTT
GTAAAAAATGTGAGCATAAAACTATTCTCCAGAATGTCGTGGATGAGGAT
GAGGTTGAAGTAACGTGTCCTAACTGTGGATTGTTTGCTGTCATTCAACC
AGAATTTTGTCATGGAGATCCTCGTAACATTGTTTTTATTGGACACTGGG
ATGGCTGGCAACCAAAGGTTGGAAGAAGAAGGGCCAAAAGCTCTGGAATT
TCTCTTACTGATGGTGGGACTACCAAGTATTATGTAAACAATCGGGAACA
TCATACAAACCCATGGCCAAAGCGAGAAATAACCACTGAAATCAAAGTAA
TGGAAAGAGTTGAATTTCAACCAAGTACCCAAGCAAAATTACGATTAGTT
ACAACCACTGGTTATTCTGGCATGACACTTTTAACACGAATGACAAACTT
GTATGGCTTTAATCCCTTCACTGACATGGTTCACGACAGCATGCATTTAG
TACTTCTCAACCTATGTCGAAAGCTGTTTAGTAGAATATTTGGAGATGAG
CGTTTTATCCCAGATACATCAGAATTCAATCAAAAACTTGTTGACTTTCC
ATTCACTTCAGTATTGAGATTATGTATCCTTTTGAAGTATATGATAATGT
TGTGCCACCAGGAAGGTGTGTCATTAGATGCATGCTGTTATGTTGGACTG
GAGATTATCCAGCCCAGTGTCAGGTTGGAAAATTCTCCAAGATGGGAATT
TCTGGTTGCACAGTTGATCATTGTAAAGGAACTATTGATTTGACAATCGC
AAACATTGAAAAAGAAGAGAGATGTAAAACAAAACACATGTATGTGTCAC
CTTTTGTGCCTGAGCACAAACTACCCAAGAAACAGCCACTTGTCCTGGAT
CCTTTTCTACAGCCAATATTGGATGAACTTGAAGACTTGTTCATAAATGA
TGAAATCCTCTAGTTTATATTCTGATCCAGTTGAACACGCTATATGTTTC
AATGAAAAGGAGCACCAGATACATTGGTACCAGATGAATCCAGATGAATC
CTGTCCAGATTGTGATGAAACTCCACCTATTAAACGTTACTATCTCCCAT
TAAAAGAAAAATTAATGCGCTGGTTTCAATCTGAAGAAATGTGCACAGCC
ATGCTTGGTCATTGGAAGAATCGAGACAGGTGGCTTGGAAAGGAAGGGCC
AACTTTTCCCCTAAAAGAGATATGGGACGGAACAAGGTTCAAAGAGATCC
AGTGTTTTTTTGATCCACTGTCAAAGTGGCCTTTGCCTCACACTTGTAAA
AAATGTGAGCATAAAACTATTCTCCAGAATGTCGTGGATGAGGATGAGGT
TGAAGTAACGTGTCCTAACTGTGGATTGTTTGCTGTCATTCAACCAGAAT
TTTGTCATGGAGATCCTCGTAACATTGTTTTTATTGGACACTGGGATGGC
TGGCAACCAAAGGTTGGAAGAAGAAGGGCCAAAAGCTCTGGAATTTCTCT
TACTGATGGTGGGACTACCAAGTATTATGTAAACAATCGGGAACATCATA
CAAACCCATGGCCAAAGCGAGAAATAACCACTGAAATCAAAGTAATGGAA
AGAGTTGAATTTCAACCAAGTACCCAAGCAAAATTACGATTAGTTACAAC
CACTGGTTATTCTGGCATGACACTTTTAACACGAATGACAAACTTGTATG
GCTTTAATCCCTTCACTGACATGGTTCACGACAGCATGCATTTAGTACTT
CTCAACCTATGTCGAAAGCTGTTTAGTAGAATATTTGGAGATGAGCGTTT
TATCCCAGATACATCAGAATTCAATCAAAAACTTGTTGACTTTCCATTCA
CTTCAGTATTGAGATTATGTATCCTTTTGAAGTATATGATAATGTTGTGC
CACCAGGAAGGTGTGTCATTAGATGCATGCTGTTATGTTGGACTGGAGAT
TATCCAGCCCAGTGTCAGGTTGGAAAATTCTCCAAGATGGGAATTTCTGG
TTGCACAGTTGATCATTGTAAAGGAACTATTGATTTGACAATCGCAAACA
TTGAAAAAGAAGAGAGATGTAAAACAAAACACATGTATGTGTCACCTTTT
GTGCCTGAGCACAAACTACCCAAGAAACAGCCACTTGTCCTGGATCCTTT
TCTACAGCCAATATTGGATGAACTTGAAGACTTGTTCATAAATGATGAAA
TCCTCTAGTTTATATTCTGATCCAGTTGAACACGCTATATGTTTCAATGA
AAAGGAGCACCAGATACATTGGTACCAGATGAATCCAGATGAATCCTGTC
CAGATTGTGATGAAACTCCACCTATTAAACGTTACTATCTCCCATTAAAA
GAAAAATTAATGCGCTGGTTTCAATCTGAAGAAATGTGCACAGCCATGCT
TGGTCATTGGAAGAATCGAGACAGGTGGCTTGGAAAGGAAGGGCCAACTT
TTCCCCTAAAAGAGATATGGGACGGAACAAGGTTCAAAGAGATCCAGTGT
TTTTTTGATCCACTGTCAAAGTGGCCTTTGCCTCACACTTGTAAAAAATG
TGAGCATAAAACTATTCTCCAGAATGTCGTGGATGAGGATGAGGTTGAAG
TAACGTGTCCTAACTGTGGATTGTTTGCTGTCATTCAACCAGAATTTTGT
CATGGAGATCCTCGTAACATTGTTTTTATTGGACACTGGGATGGCTGGCA
ACCAAAGGTTGGAAGAAGAAGGGCCAAAAGCTCTGGAATTTCTCTTACTG
ATGGTGGGACTACCAAGTATTATGTAAACAATCGGGAACATCATACAAAC
CCATGGCCAAAGCGAGAAATAACCACTGAAATCAAAGTAATGGAAAGAGT
TGAATTTCAACCAAGTACCCAAGCAAAATTACGATTAGTTACAACCACTG
GTTATTCTGGCATGACACTTTTAACACGAATGACAAACTTGTATGGCTTT
AATCCCTTCACTGACATGGTTCACGACAGCATGCATTTAGTACTTCTCAA
CCTATGTCGAAAGCTGTTTAGTAGAATATTTGGAGATGAGCGTTTTATCC
CAGATACATCAGAATTCAATCAAAAACTTGTTGACTTTCCATTCACTTCA
GTATTGAGATTATGTATCCTTTTGAAGTATATGATAATGTTGTGCCACCA
GGAAGGTGTGTCATTAGATGCATGCTGTTATGTTGGACTGGAGATTATCC
AGCCCAGTGTCAGGTTGGAAAATTCTCCAAGATGGGAATTTCTGGTTGCA
CAGTTGATCATTGTAAAGGAACTATTGATTTGACAATCGCAAACATTGAA
AAAGAAGAGAGATGTAAAACAAAACACATGTATGTGTCACCTTTTGTGCC
TGAGCACAAACTACCCAAGAAACAGCCACTTGTCCTGGATCCTTTTCTAC
AGCCAATATTGGATGAACTTGAAGACTTGTTCATAAATGATGAAATCCTC
TAGTTTATATTCTGATCCAGTTGAACACGCTATATGTTTCAATGAAAAGG
AGCACCAGATACATTGGTACCAGATGAATCCAGATGAATCCTGTCCAGAT
TGTGATGAAACTCCACCTATTAAACGTTACTATCTCCCATTAAAAGAAAA
ATTAATGCGCTGGTTTCAATCTGAAGAAATGTGCACAGCCATGCTTGGTC
ATTGGAAGAATCGAGACAGGTGGCTTGGAAAGGAAGGGCCAACTTTTCCC
CTAAAAGAGATATGGGACGGAACAAGGTTCAAAGAGATCCAGTGTTTTTT
TGATCCACTGTCAAAGTGGCCTTTGCCTCACACTTGTAAAAAATGTGAGC
ATAAAACTATTCTCCAGAATGTCGTGGATGAGGATGAGGTTGAAGTAACG
TGTCCTAACTGTGGATTGTTTGCTGTCATTCAACCAGAATTTTGTCATGG
AGATCCTCGTAACATTGTTTTTATTGGACACTGGGATGGCTGGCAACCAA
AGGTTGGAAGAAGAAGGGCCAAAAGCTCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17592MSTRG.17592Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17592.1.p1MSTRG.17592.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17592.1.p1.exon5MSTRG.17592.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17592.1.p1.exon4MSTRG.17592.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17592.1.p1.exon3MSTRG.17592.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17592.1.p1.exon2MSTRG.17592.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17592.1.p1.exon1MSTRG.17592.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000179_pilongenomesc0000179_pilon:121190..125497 -