MSTRG.17443.1.p1 (mRNA) -

Overview
NameMSTRG.17443.1.p1
Unique NameMSTRG.17443.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000175_pilon:376616..378888-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17443.1.p1 ID=MSTRG.17443.1.p1|Name=MSTRG.17443.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2273bp|location=Sequence derived from alignment at sc0000175_pilon:376616..378888- (Clytia hemisphaerica_ch_hm2_pilon)
ACCGAACTATCTTGGTGGAACTCCTAAAGCCGTCAAAAGATCTGCATCAA
GGTAATTTCTGAATAAATAGTCATTGAGGTACTCCAGAAGCATGAGGATT
TATGATTCATATTTTGTCTTTTTTAACTCTTTTGAGAAGCAATGTTTTAG
CACTTAAAGGTCATAACTTTTGATGTAGTTAACCAAATTTGATAAATTAC
CCCTCAAAATATATTCCAATAGATCAATTTATTATTTGGTTCTTCAGCTA
TTCCTTCAATAGTATTCGTTTTATTTATTAGAAGACAAGAAGAAGAGGAG
AGCTTGGAACTTATTGATGCGGCGAAGATTATGGGTCAGTTTATGTTAGT
TTTGTGTACTCCTAGCGAAGTCCTGATATACAGTTTTCTTTGTAAAGCTT
ATGTGATATTATAGGAGTCAGAAATTTTGATTTTAGTAATAAACTAAATT
TTAAGACATCTCTGTCAGGAAATTAAGCATTAAAAACGTTTGTCAGGGAC
CGATGGTTTAGTCTTTAAGATGCTCTTTCTGTAAACAGTTTTTATGAAAT
GTGTTGACTTTTATAAGAACATTCACTAGCCTTAAATTTGGCAAAGAAAC
TAAGAACAAGCTCAGCCTCGGAATTTTCTGAGGACATTTAAAAGCAACCT
TTTTTGGCACTGTTAATACAGAAAGGCATGTTTTCCAGAATATTTTACTC
TTTTTCAGCAAAAAGCTTGTTTAGAAGATTTTCAAGGTTTTTTTGAAGAT
AGAAGTTTTGCTTTGGAAGTACTGTCAAAAAGAACATTTTAAGAACAGCT
GAATAACATGAAGCCTTAAAATTCCCAAAACTTAAGAACAATTGAGCCTT
AGTCAAAATTTACTGGTTCTTTTAAAAAGTGATTGTAGTTCATCAGTTTA
GGCCTTTGAATTTTATCAATGCATTGCTTAAAAAGCTAACCGCTGTCTTT
TCTATCTTCAGAACAATTTAAAATGTTGTACGATCGGCAAAACAAGATCA
TGACAGAAATTGTAAAATTAAGAGCACACATCGACAACAAGATGGCATCT
CTTCCCATCGAAGACGATCAATTCCAGCTTCCAGAAGTAGACAGCCAACA
AGAAATGGATACCTTGGAAGAAAATCTAAATGATCCTGATTTCTTAACAA
AGTTTGTAAGTATGATTAATTCAGTTAATTTCAATTTAGCTGTCAGAAAA
AACGAAATTCGAATCCCCAGCCATAAAAAATATGGGAATATCGATCCCCA
TTGAGTTTTGGTCCGTAAATTTTACCTTCACTAGCTAATAAAATCCCACC
GGGTCTGTGAGAAGGGGGTGTCTGATTGACACCAAAAAACAGCGAACAAA
CAAACATCCTGTTTCATCATAGTAAATTACAGTATCTGAAGACTTTGTGT
CTTATCTTTGCACTGAGTAGATGCTTTTGAACGTTTTTTCACAGTGATTA
TGCTCTGAAATTGAAGAATTACCTCTTTGAAAATGGTGATATTATCTCAG
TAAATTTTTCTTTTTTCTTATCTACATCTTCATTTTGAAAGATTTTTTCA
ACTTTCTTTTTGATAATATCCACTTCCGAGTTAATTTTTCGACCGGCACC
TGCATCTCTATCAAATTGAAGGTGAAATTAAATTCGATCTCTTTTTATAG
AAATCTCGTATCGCACGAATTGGCGGGGTTGAATATGGTGATGCTACAAT
TCTAGTGATGGAAAAGTAAGTAGTGATAAAAGAGATCCTTCGGTCTTCTA
GATATTTAAATGTCTAATAACAAAGATCTTTCAATACGGAAAACGATAGT
GCTTCAAATCTTGAGATGGTGATTTTCAGCTTATAGTTCTGAATGTTTTC
TGACTACTGGTTTTGTACGTCCGATGTTTATTATGCATGGTTCTTCAACG
AGGCAAAGGAAAACAATGCCCCATTTAATTGCAACATTTTTTAAATAAAA
AGACTTGTCCTTATTTGTTTTTTTCGAACGTGCATAGCAATTCCTTTAAA
TTAAAGTTAACTAAACAAAGACCAAGTTTTTTCCCAAATGGGGTAGATCC
AAGTGGGTCACAGAGGCAGGGGTGTTGTGTTACATCGTTCTCTTTAAGAA
ATCACAATTCAAAATACATAGATCATTTTCAAAACTTTTTTTCTTTAGAT
TTTTTACAAGAGCTTTCTTAAGCACCTGTAACATGGAAGGAAACAACGGG
AAGTTTGCCTTCAAGAAATCCAAGGCTTATTCTGCAATTAGTGGTAATTT
GTTTCTACTTTTTAAAATTTAGT

Coding sequence (CDS) from alignment at sc0000175_pilon:376616..378888-

>MSTRG.17443.1.p1 ID=MSTRG.17443.1.p1|Name=MSTRG.17443.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1116bp|location=Sequence derived from alignment at sc0000175_pilon:376616..378888- (Clytia hemisphaerica_ch_hm2_pilon)
ATTTTTTACAAGAGCTTTCTTAAGCACCTGTAACATGGAAGGAAACAACG
GGAAGTTTGCCTTCAAGAAATCCAAGGCTTATTCTGCAATTAGTGGTAAT
TTGTTTCTACTTTTTAAAATTTAGAAATCTCGTATCGCACGAATTGGCGG
GGTTGAATATGGTGATGCTACAATTCTAGTGATGGAAAAATGTTGTACGA
TCGGCAAAACAAGATCATGACAGAAATTGTAAAATTAAGAGCACACATCG
ACAACAAGATGGCATCTCTTCCCATCGAAGACGATCAATTCCAGCTTCCA
GAAGTAGACAGCCAACAAGAAATGGATACCTTGGAAGAAAATCTAAATGA
TCCTGATTTCTTAACAAAGTTTATTTTTTACAAGAGCTTTCTTAAGCACC
TGTAACATGGAAGGAAACAACGGGAAGTTTGCCTTCAAGAAATCCAAGGC
TTATTCTGCAATTAGTGGTAATTTGTTTCTACTTTTTAAAATTTAGAAAT
CTCGTATCGCACGAATTGGCGGGGTTGAATATGGTGATGCTACAATTCTA
GTGATGGAAAAATGTTGTACGATCGGCAAAACAAGATCATGACAGAAATT
GTAAAATTAAGAGCACACATCGACAACAAGATGGCATCTCTTCCCATCGA
AGACGATCAATTCCAGCTTCCAGAAGTAGACAGCCAACAAGAAATGGATA
CCTTGGAAGAAAATCTAAATGATCCTGATTTCTTAACAAAGTTTATTTTT
TACAAGAGCTTTCTTAAGCACCTGTAACATGGAAGGAAACAACGGGAAGT
TTGCCTTCAAGAAATCCAAGGCTTATTCTGCAATTAGTGGTAATTTGTTT
CTACTTTTTAAAATTTAGAAATCTCGTATCGCACGAATTGGCGGGGTTGA
ATATGGTGATGCTACAATTCTAGTGATGGAAAAATGTTGTACGATCGGCA
AAACAAGATCATGACAGAAATTGTAAAATTAAGAGCACACATCGACAACA
AGATGGCATCTCTTCCCATCGAAGACGATCAATTCCAGCTTCCAGAAGTA
GACAGCCAACAAGAAATGGATACCTTGGAAGAAAATCTAAATGATCCTGA
TTTCTTAACAAAGTTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17443MSTRG.17443Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17443.1.p1MSTRG.17443.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17443.1.p1.exon4MSTRG.17443.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17443.1.p1.exon3MSTRG.17443.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17443.1.p1.exon2MSTRG.17443.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17443.1.p1.exon1MSTRG.17443.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175_pilongenomesc0000175_pilon:376616..378888 -