MSTRG.17438.1.p1 (mRNA) -

Overview
NameMSTRG.17438.1.p1
Unique NameMSTRG.17438.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000175_pilon:317390..319747+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17438.1.p1 ID=MSTRG.17438.1.p1|Name=MSTRG.17438.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2358bp|location=Sequence derived from alignment at sc0000175_pilon:317390..319747+ (Clytia hemisphaerica_ch_hm2_pilon)
TTCATGGGATACTTGTCATCATCACAAGTAAgaatttatgtgtttaaaaa
atattgactttaatttcatattttcgTTAGCAGCCACCGACCAAATAATC
ATTCCCCATCTGTCAAAAATGCTAAACTCTTCAAACATGGCTGGATTTTT
CACGAAGAGCATTTCTCAAATCATTGGAAGTAGCTATTATAACAAAGCAC
CGGAAGCCGGCTCTCAATACATTTTGGGAACGTCTCCTCCAGATGGTTCA
ATGGAGTTGTACATTTTGGACAACAAGCTACAAGTTTGTTCATGTCCTAG
GGAAAAGATACCACTGCTCTGTCACTCAATCATTCAGATGGCCTTATTGC
CAGACTCAAGGTGAGTAGGTGTTCTTTACatttgaatttagaaaataatt
tcctttttttattattttttatcttttgatactGAATGTCAAAGTCTCAG
TATTGGGATATTCCAGATATAGTCTgtataccccctatgttgagagGGTG
TGAAGTCCAGgatggtctggaaaataaaaaatccaggtgCGGTTTTTTGA
GTGTACAACTCCAGAGtagtcagtaaaatgaggtggaAAGTCTAGGGTGG
TCAGCAAAACGGGGTTTCAAATCCAGGGTGGCCACCTTTCCAAAGAAAGA
CCTTAAAACATAGAGGTTACAACTTTTTTCTGAGTAGCCCATCATATGAA
TATTGTACCTGGATAATTTTTTAACATTCCTTGTGCTAATAATGTaaaca
ttattattttttgttttctttcagcCCAAGCTTTTTCAGTGTCACAGAAG
CAGAGAATATGACTCTGATTTTGACTGAAGAGGATTTCAAACGTAAGAAA
ATGTCTTTTTAATCGAATTCTAAATTGTAGCCAAAAATTGGAACTCTATA
ACGTTATTTAGAGAAATCTGTTTTTCAGACATTTTATGGTTGGGTCATTT
AAATGTAAAGTTTCACTTTGGTTTTGATAATCTTTTTTGTCTAGACTTGT
TCATTCTGATTACATTAACAACTGTtgtttggaaaaactttttaaatttg
attaacGGTAGACTTTTATGAGGCAACAATGATAATGTGATTAAGTAACA
GGTTGTCACATTTGACAACATCTGATAACactttcatttgttttgattca
aaGAAACAGcttttttttaagttatttcATAAAGAAAGCTTTCCTGCCCT
ATCAAGTcatatttttatatgaaattttatatacatcatcaaaaaaatga
tttttttaaggaAGTGTTCCTTTCATGTCTGTATATAGCCTAGAAGCTAG
TACTAAAATTATATCCCAACAAAATTATCAACTAAGTAAAATAGCTTTCA
TATTTACGactgttttgataaaataaaggTGTTTTATTTCAGCTCTTTCA
GTTCTTACTTTACCTAACCTAGTTCATATCATTCATCACCATCAAAGAAC
AAAATGAAACCCAATAAaacttagctctagtttagacggccgactttctg
ccctgcctgtTCCAATTATTAGAGTAggcaaaaaaatggacaaaaagttg
gtagttaaaatctttgctttaaaaaagttgaaagaagacattgcattgaa
gtcaaaagagggctatgcattGACTTTATATAGCCAACTTTCTGtcaact
ttaattcacaattagaatagtcAGGGCAAagagtgggccgtctaaactaa
atctttttgatttaatCTTTTCCCTCTGTAGAATTACCGGAAAATGTTGA
GCTGGAGACTTCTGGTCAGGTGTGGAGAGTTCTCACTGTTTCTGTTGGTG
CTCTTGGCTCCTTCAATGAAATCATGGGTGTCAGTAAGATTGCAAAATCC
GCCATCGGACCATTAGCTGACCATAATGTTTCTGTACTATGTCTGTCAAC
CTATCAATCTGACTATATCTTGgtaataatccaatttttcatactgtTAG
TTTTCGGtacctgaaaattttttttagttatTAGGGTTGACAATTTTTTG
CTACTCAAATTGTATAACCTTAAATATCAGGGCTTTCATAGAGTTAATTT
CCAACTGCATTGTTTTTACGTTCCATGACtagaacctctataactcgaat
gaaCTGAAATCTGATATCTTCCTAGTTATAAATACTGACCCTACTGGATC
TTAATTTGAAGCTATCATTGGTCATTTTAATATTGATTTAATCCTTTATA
ATTACTAGGTGCAAGAATCTCAACTGAACGAAGCCATTCAATGTTTGAGC
TCAtacttcaaaatattcaatgaagATCATCAACGTGTTAGCGAATCAAA
AGCGACCACACCCCTCTCCCCAACACCCAGTAAGGTTTTAGTAGagttta
tgaaatct

Coding sequence (CDS) from alignment at sc0000175_pilon:317390..319747+

>MSTRG.17438.1.p1 ID=MSTRG.17438.1.p1|Name=MSTRG.17438.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2928bp|location=Sequence derived from alignment at sc0000175_pilon:317390..319747+ (Clytia hemisphaerica_ch_hm2_pilon)
atgtgtttaaaaaatattgactttaatttcatattttcgTTAGCAGCCAC
CGACCAAATAATCATTCCCCATCTGTCAAAAATGCTAAACTCTTCAAACA
TGGCTGGATTTTTCACGAAGAGCATTTCTCAAATCATTGGAAGTAGCTAT
TATAACAAAGCACCGGAAGCCGGCTCTCAATACATTTTGGGAACGTCTCC
TCCAGATGGTTCAATGGAGTTGTACATTTTGGACAACAAGCTACAAGTTT
GTTCATGTCCTAGGGAAAAGATACCACTGCTCTGTCACTCAATCATTCAG
ATGGCCTTATTGCCAGACTCAAGcCCAAGCTTTTTCAGTGTCACAGAAGC
AGAGAATATGACTCTGATTTTGACTGAAGAGGATTTCAAACAATTACCGG
AAAATGTTGAGCTGGAGACTTCTGGTCAGGTGTGGAGAGTTCTCACTGTT
TCTGTTGGTGCTCTTGGCTCCTTCAATGAAATCATGGGTGTCAGTAAGAT
TGCAAAATCCGCCATCGGACCATTAGCTGACCATAATGTTTCTGTACTAT
GTCTGTCAACCTATCAATCTGACTATATCTTGGTGCAAGAATCTCAACTG
AACGAAGCCATTCAATGTTTGAGCTCAtacttcaaaatattcaatgaagA
TCATCAACGTGTTAGCGAATCAAAAGCGACCACACCCCTCTCCCCAACAC
CCAGTAAGGTTTTAGTAGagtttatgaaatctatgtgtttaaaaaatatt
gactttaatttcatattttcgTTAGCAGCCACCGACCAAATAATCATTCC
CCATCTGTCAAAAATGCTAAACTCTTCAAACATGGCTGGATTTTTCACGA
AGAGCATTTCTCAAATCATTGGAAGTAGCTATTATAACAAAGCACCGGAA
GCCGGCTCTCAATACATTTTGGGAACGTCTCCTCCAGATGGTTCAATGGA
GTTGTACATTTTGGACAACAAGCTACAAGTTTGTTCATGTCCTAGGGAAA
AGATACCACTGCTCTGTCACTCAATCATTCAGATGGCCTTATTGCCAGAC
TCAAGcCCAAGCTTTTTCAGTGTCACAGAAGCAGAGAATATGACTCTGAT
TTTGACTGAAGAGGATTTCAAACAATTACCGGAAAATGTTGAGCTGGAGA
CTTCTGGTCAGGTGTGGAGAGTTCTCACTGTTTCTGTTGGTGCTCTTGGC
TCCTTCAATGAAATCATGGGTGTCAGTAAGATTGCAAAATCCGCCATCGG
ACCATTAGCTGACCATAATGTTTCTGTACTATGTCTGTCAACCTATCAAT
CTGACTATATCTTGGTGCAAGAATCTCAACTGAACGAAGCCATTCAATGT
TTGAGCTCAtacttcaaaatattcaatgaagATCATCAACGTGTTAGCGA
ATCAAAAGCGACCACACCCCTCTCCCCAACACCCAGTAAGGTTTTAGTAG
agtttatgaaatctatgtgtttaaaaaatattgactttaatttcatattt
tcgTTAGCAGCCACCGACCAAATAATCATTCCCCATCTGTCAAAAATGCT
AAACTCTTCAAACATGGCTGGATTTTTCACGAAGAGCATTTCTCAAATCA
TTGGAAGTAGCTATTATAACAAAGCACCGGAAGCCGGCTCTCAATACATT
TTGGGAACGTCTCCTCCAGATGGTTCAATGGAGTTGTACATTTTGGACAA
CAAGCTACAAGTTTGTTCATGTCCTAGGGAAAAGATACCACTGCTCTGTC
ACTCAATCATTCAGATGGCCTTATTGCCAGACTCAAGcCCAAGCTTTTTC
AGTGTCACAGAAGCAGAGAATATGACTCTGATTTTGACTGAAGAGGATTT
CAAACAATTACCGGAAAATGTTGAGCTGGAGACTTCTGGTCAGGTGTGGA
GAGTTCTCACTGTTTCTGTTGGTGCTCTTGGCTCCTTCAATGAAATCATG
GGTGTCAGTAAGATTGCAAAATCCGCCATCGGACCATTAGCTGACCATAA
TGTTTCTGTACTATGTCTGTCAACCTATCAATCTGACTATATCTTGGTGC
AAGAATCTCAACTGAACGAAGCCATTCAATGTTTGAGCTCAtacttcaaa
atattcaatgaagATCATCAACGTGTTAGCGAATCAAAAGCGACCACACC
CCTCTCCCCAACACCCAGTAAGGTTTTAGTAGagtttatgaaatctatgt
gtttaaaaaatattgactttaatttcatattttcgTTAGCAGCCACCGAC
CAAATAATCATTCCCCATCTGTCAAAAATGCTAAACTCTTCAAACATGGC
TGGATTTTTCACGAAGAGCATTTCTCAAATCATTGGAAGTAGCTATTATA
ACAAAGCACCGGAAGCCGGCTCTCAATACATTTTGGGAACGTCTCCTCCA
GATGGTTCAATGGAGTTGTACATTTTGGACAACAAGCTACAAGTTTGTTC
ATGTCCTAGGGAAAAGATACCACTGCTCTGTCACTCAATCATTCAGATGG
CCTTATTGCCAGACTCAAGcCCAAGCTTTTTCAGTGTCACAGAAGCAGAG
AATATGACTCTGATTTTGACTGAAGAGGATTTCAAACAATTACCGGAAAA
TGTTGAGCTGGAGACTTCTGGTCAGGTGTGGAGAGTTCTCACTGTTTCTG
TTGGTGCTCTTGGCTCCTTCAATGAAATCATGGGTGTCAGTAAGATTGCA
AAATCCGCCATCGGACCATTAGCTGACCATAATGTTTCTGTACTATGTCT
GTCAACCTATCAATCTGACTATATCTTGGTGCAAGAATCTCAACTGAACG
AAGCCATTCAATGTTTGAGCTCAtacttcaaaatattcaatgaagATCAT
CAACGTGTTAGCGAATCAAAAGCGACCACACCCCTCTCCCCAACACCCAG
TAAGGTTTTAGTAGagtttatgaaatct
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17438MSTRG.17438Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17438.1.p1MSTRG.17438.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17438.1.p1.exon1MSTRG.17438.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17438.1.p1.exon2MSTRG.17438.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17438.1.p1.exon3MSTRG.17438.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17438.1.p1.exon4MSTRG.17438.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175_pilongenomesc0000175_pilon:317390..319747 +