MSTRG.17427.2.p4 (mRNA) -

Overview
NameMSTRG.17427.2.p4
Unique NameMSTRG.17427.2.p4
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000175_pilon:164513..171200+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17427.2.p4 ID=MSTRG.17427.2.p4|Name=MSTRG.17427.2.p4|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6688bp|location=Sequence derived from alignment at sc0000175_pilon:164513..171200+ (Clytia hemisphaerica_ch_hm2_pilon)
cagtGAATAGTTGGTTAGAAACGCTTCTTAActttgtcaaaacaaaaaag aagaagaagtcaTGGTTCGAAAGATCAAGATCCTGCCAAGAATATTGGGA TTTGCTGAGGAAGAATATTTGGAGGACAATGCAGGCTAGGGAAGTTTTGG ATGAACATTTGTAATGTGTGTTGTGATCGACTTGGTGATCTTTATTGCAT GGATTGTCACAAATCATTTTGTCATGTATGTGACGATGTCTTCCACTTGG CAAATCCATTACATGATAGATTGTCCTCTGGCAGGTACCTAGATGTTCTG GAGTGTTTGGATGAGAAGAAAGAAATAATACCAACAAGTATTTTTCAAAT AGTCAGTTATAATTAGAAAATGTATAATGCAATACATCTAACAGCTTAAT ATACACACTTTAATCATAGTGCATAGAGCCttctcaaaatcacaaaaagg gAGGGAACAtctgttaatttttttcattaacttTTAGTTCGCTATCCACC ACTTAAATGTGTTTGTTCAGTTTGTGGCAGTAAGGAGGTCACCAAGATCG CTACAGATGAGTATTGCATTGTCGTTACATTGAAAGGTAAGCAATttgat ttagaaatttcaaagtcaacaATTATAGGAATCTCCTCTTAAAATTGTAA TTGTTACCAAATTTATTCACTTACAAGTGCCTTAACTCAATTTCTGATGA TTTTTGTAGCGTACGTTTTTATTGGTTTTACAAAACACTTTTGGTCccat tgtttttattattctaTTGCCCAATatatcataattttttaatCTTATAA ATGTAAATGGGGCTGCTCGAATAGTTGCTAGCCTTATCAaaggtttttct tgtttttattgattatcTGACTATAATACCAAGGCGCAATTGTTAGTTAT TTGGAATATCGTTGTAAATTGTTTTAATTCCAAACTACTAGTACCAAACT ATACAGAAGCAGATCTAGCTAACATTTTGCAATCGTTTTTTAGAAAGCTA CCATCAATCCGACTAATTTTGCGATGGCGTTCCGAGAATGGTGTTTGTGG TTGGATCAAAAAGACCTTATTCAATTCAAAGATTGGATGGAATGTCCAGC ATATCATCTTCGCCCCCATAGTTCACATGTGGATGGAAACGTAAAGCTTT ATCGTTACAAAAGGGGAATGTAAGTGAATAAAGAAGGATGGAAAATTGTT AGCAATAATCTTAGGTTAACAAGGATGGAGGTTAAACATATGCACTTGAA AACTATAAATactaaatgttcttattaagAATTTCGAAAAGTTCTTCCAC ACCCTTTTACTCAGAACACTTAGTATTAACTGCATTttccatttgaaaaa tggacatCCACGATAGACATTATTaagtactaactgcttgaccccctgAA AAAGATGCAACtcaatttcatttatatttttttagaagGCAGCGACAATC ATTCTATGACAGAAGATATTCATTATTCCTAATGAATCAGTTTCTAAATT TATTGATCGTTTGTACAAAAATCAAGGTATTATAATTTTAAGAATGTTGG tctatttattaattttttatctaatcAATACCATTatcataaataataag aagctcaaaatagcaaaaaattaagaaacattgaggaaACGTAGTCAGGC TAAAATTCTAAATCTCtccattttcataatttttttgctttttaaactAT TAAAAGCAATTAATAAACTTCGCCTGAGTAACAAGCTTTGGAACCTAAAA ATAGATTAACTGAAAGTCACTGGGTTCCAAAATTAATTTCACAGAAATGA ACAAAATActtttagattttaagaaacatctaagaaacgtTTCAGGAAAA AAGATGAATGCTTAAAAACATCAAGCCTGCTCAGCAAAACGTGTTTCCTT AAAAAAGCGTAATGCAAATTTGTGTTGTATTGCTTTTTAGGATAATAATG ACGCGATTTGTGGTGGGACATGGACGGCAGCACAAAATGTAACAAGAAAG ATGGCAAAGCTCGATGAGACAGGGTTAGAGGTGGCAACTTGTCGTCGTGT AATGGCAAAAAAGCCATTAATATGTTCAGAGGCGAAGTATTTGGCTATCC CTATTTTTTGATCAAAGGAATCTATGATTCCAAATGGCACTAGATTTTGT TTTGCAGATGTTATGTGCAAGCTTTGGCCGTTCATGGTTCGTGATGATGC TTCGATTAAGGAGTCAATCAAGCCAGCGTTATCAATAATGCACGCTAAGG GTCATTCTATAGAATGCCAGGTAATTAATTCGTCAATTTATTTGTGGATG TACTTTGACTTCTCACGCCCCCCTCATTGGACCTTGAATCAACTTAAAGT ACTACAGTGAAGTAATTTTCTGTAACCATCCCCCATCTAGGTGGCTGTAG ATTGGAGCGAAACTGAGCGAAACGATAAGACAAGTATTATGTTGCAAAAT TTGAAATACTGTTTTTTTATATTTATGCCTTAATTCTTAGGTTGTTTGGA GTGGTGAATGGTTGGAAGGCACCGGACGTTCAACAGGAGAGGAAACAGAG CAATTGTTCAGTTATCTTTCTCGGTTTGGAAATAGTACAAAGTATCAATT ACCTGAAAGTAAATATTGTTCATTAAGTCAAATATATTTAATTCAAGTAC GTTTCTCCCTTATGTCACTAATAGTAATACAGTTGTTCTTTTCCTTTATT TATTTCTGATTTAATTTTTCAGGAAGAGAAGAAACACTAACAGAAGCAGT TCTTCACTGGAACAAATCCAAAATCAAAAAACTTGTACCAGATTTGGTCA AGAGATATTACAAGGTAACAAGATACGGTAATTTGCTACGTTGAAAGGTT TTTGCATGACATGATACTTCATGTGAGAGATGATTGAGCGTATTTATTTG TACGTCAATTGCCAGAAGGACTCAGTCTTTTCCTAATCTATAATTTCTTT GGTTTtagaataaagaaaatttaaaaatgattggTGACTTGCCAGACAAA CATCCAACTAAAATCATAATGCAATGGAAGgatgaaattcaaaaagaagc ATTAGGTAACAGTGTTGATATTAGGATTTGGCGCGTTGTCCTCAATTGAA GACCTTTGCTCAATATGTATTATATATCagtataaattataaaaatcgCT ACAAATGTACCGTCCAAGCAGTTAGTCCAAAACACCATGCCCGTTAGTAC ATCTTTTGCAGTTTCTACTGGTTTTTACAGGCTTTCACTGCACTTGGCTT CACTCTGCTTTACTTCTaccttttgttcttttgttgtaACTTTTTCTAGG TTTGAGAAGTAGAGTGGTTCGTCAACCTTCCGACGCTGAAAAGCTTCTTC TTCTGGTGGAAAAGCTTCACCTTCCACCTGACTATCACATAGTTGTAGCA GATTATCATTCCCCAAGACAATGGATTATGGTAAAAGTTATCGGGTTGAT AAGCAGGATCAATTACAAGAACTTGATTGACTTACCAAAGAGATTAAAGT CGAAGATTTACTGGTAcgacttctttatttttgttttattaattGATGCT TAAGGGAGGGTTGAATTAGGGCTGTTAGTCAAATAGGGGGTCAAATTGCT AATTACTGTAGCTTGATTTGAAGAAAACTAAGATTTGAGCTCtttttttG AAGAAGTTAACAACAATTCGGgctaaacatttttaaaaagagattgctat gaaaaAttgaaattgttgtGAATTAAACATTCGCCAGCTTTTCCTAACAA ACAAATTTTTACTGAatttcaaaagtccaaaaatagACATTTCCAATATG TAACATCCCTAGCGCTCTTCTAAGTCAGCTAAATGAAAAGATCTTCTTAG TTTCTTAAAAATTCTTGTTTAGAATGCACACACAAGCCTTCCCAAGGGAT TTTATTGCCTTTAATCAAAAAGGCAATTGAAAagtccaaaattgaaaaaa cctTGTTGAATGCTCAAGTTGGAGAGAAAGGTATTTTGCCtctgttgttt attttttttcatttagtaaaCAAATTACATGCAATTTAAagattgttatt atttttgcaaaatcttaTTTACACATGCATCCTATGAATGTTAGAACATT TTTGTATTACATTCTAGGAtttttttGTTGGTATTGATTCTATTTCAGAT ACaagtaaaaaaaggaaaacagtCCGATCAAAACTGGCCGCTCTAAAGAA AGCAGAAATTGATATGTTTGGTGATTATTTAATGTTGACCGGAGAAACAA ATAATAAGGAAATGCATAATCATCTCGGCAAAGGAATTTTACCTTGGTTA GACGATAGCTCCTATTCTGAAGGTAATTAGGAGATATTTATTCTTTTTCA AGACAGCCTATTACGTGTTGTTTTCTCTAGATCTCATTATGGAAAAGTTG GCTTTGTTGAAGTTCAGATTATTTAAAGGagtctcttttttctttttttt cagctgTTAAACGCAGGATAATTGtggaaaaatatcttaaaaggCAACGT TACATTGAAGAAAAGCAAATTTTATTTAGCGAAATGAGAAATGCTATTAA TTTCATGCAAGGAAAGATCCAAAAATTGATGGAAGAATCAAAGGAAACAA GTAAGAAATAATTAAAGATGTATTTACAGCTTTGAGGCTTTACATATTCG GTTTTACAGATTTGAAGCTTTAATTTGATTATGTAGCACGTGAAAGCCTG TTTCCGAGAAGTTTTGGATTGTAAACTCGAAACCAGTGCTTGTTTCTGAA ACAACATCAACAGAAATATGGAAAGACAAAAGATAGAATTTACAATTGTA AAAATAATGATAACAATAATATACTTCTAAAACTACACTATCCATCCTCT CTTCAATGATTTATCATCATTGTTTTTACGTTTGAATATTTAGGAGTGAA ACGACTAAcgttattctttattttttattttttagtccCAAATGTAGTAG CAAACTTAAAAGAGGAATCAGGCCAAGATCTTTTTACAGTAAGTCTTCAT AGTTTGTGTTGAAAGAAAGCACAACGAGGAAGGTGCACGGAgaaaataga aacttttttaattgGGAAGGCAAAAAAGGTGTAGGTAGAATTTTGAAAGA GATTGGGTAAGACAGATTctttccgaaaatttttacaattttgattcTAG TTAGCAACGTTCTATGGGAAAAGGGTTCAAAAATAGAGAGCAGTACTTAC ACTGCCTCACTGCTAATCAGTTAGAAGACTTTGAGTTACTTATGTTCTGA TATGAAGGTCTTGCATTCCGGCGGcatgaattttatattttgatacatta aagcttcaaaactcaatttatttttatttacagaTCAAATCAAGACAAGG ATTGAAGTCCCTAAAGGAGCAAGGTGTCGAATACTACCGGAGGGAGTTTG AAAGCGCCATCCGAACATTTTTGCCAATCATCGAACCCAACGGTGTTCAC AATTTTGACAGCCTGTTGGACTTTGATACGCCAGTAATCGAACAAACCGT TGTTAGCGATACAGACAATCCTGATTCTGATGACTTTGACGATTTTAATG GTGAAAGAGATATTGATTGTGAACTTTCTGAtcctgaaaatgaagaaaat agcGATGACGAGGAAAGTGAAGGGCCGACGATATGAAAActtaatttaaa aaagaattcttaCTTAGACTaaaaaaacagaaacttttattttatttcgc ggattttatatattatattggattttGCTAGTGTATTTCAATCATGCGTG TGAAGTTACCCTCTTCGATCAAAATTGATGTAATGCTCTCAGGGTGATTT TTGCTCAGAAATACACGGGTTTTAAATTAGAGAAATCGATGTTTTCATGT AAAAAGTCAATGAGAATTTCAAGAAACCCAAAAACGgctatttgaaaaat tactttttccaTCGTGctttaatttgttcattgttGTGAACGATAGATCT TACTTTATCAGACCCTTcggattttcttgaaattttcagcgACTTTTTCT ATACAAACATAGATTTCTCTGATTCGGAACCCGTGTATTGTATGTAACCT GGTATAAATTAGTCAAATAACTAGTAGCATACTTCACAGACATGCtaata agtttaaaaaatgtaaataaaatgaaaaatacaatcaAACTTTTCTCGGG GATAgaaataacattttattaaaaatcctTATTAGGCGAGGCCGATTTAA TTAGTTGTTTTTCGACgcccgaccgacccatatttttggaaaagtgaaat gaaaataaaatggaaagtgaaaatCACtaaagattttgatttcatgGTTC CTACatttgtttaaaagaaataagaaaatagcattttaaattttacattA AATTATAGCTTTATTTAAATACATTGGCCTCAAAGAACAAATttagaaaa gaaagaaactcttaaaaaaactttattgataCTAACTCTACTAATAtttt tttGCCGACCGACCCACATTTAAAAACTGCCACCTCTAAAACAACTAGTt gaattggtctcgccttaactaccatttttaattttttgtccaaaaaagca AAACCTTTGTAAATATGTTGTTTTGAGGGATTTCGATCtgcaattcaaat tttatttgatatcTTGTAACTCAAATTTgttatcaaaataagaaagacaT TAGTAAGAAGTGTTTTACATAtgattttgtttcaattt

Coding sequence (CDS) from alignment at sc0000175_pilon:164513..171200+

>MSTRG.17427.2.p4 ID=MSTRG.17427.2.p4|Name=MSTRG.17427.2.p4|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=927bp|location=Sequence derived from alignment at sc0000175_pilon:164513..171200+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACATTTGTAATGTGTGTTGTGATCGACTTGGTGATCTTTATTGCAT
GGATTGTCACAAATCATTTTGTCATGTATGTGACGATGTCTTCCACTTGG
CAAATCCATTACATGATAGATTGTCCTCTGGCAGGTACCTAGATGTTCTG
GAGTGTTTGGATGAGAAGAAAGAAATAATACCAACAATTCGCTATCCACC
ACTTAAATGTGTTTGTTCAGTTTGTGGCAGTAAGGAGGTCACCAAGATCG
CTACAGATGAGTATTGCATTGTCGTTACATTGAAAGAAAGCTACCATCAA
TCCGACTAAATGAACATTTGTAATGTGTGTTGTGATCGACTTGGTGATCT
TTATTGCATGGATTGTCACAAATCATTTTGTCATGTATGTGACGATGTCT
TCCACTTGGCAAATCCATTACATGATAGATTGTCCTCTGGCAGGTACCTA
GATGTTCTGGAGTGTTTGGATGAGAAGAAAGAAATAATACCAACAATTCG
CTATCCACCACTTAAATGTGTTTGTTCAGTTTGTGGCAGTAAGGAGGTCA
CCAAGATCGCTACAGATGAGTATTGCATTGTCGTTACATTGAAAGAAAGC
TACCATCAATCCGACTAAATGAACATTTGTAATGTGTGTTGTGATCGACT
TGGTGATCTTTATTGCATGGATTGTCACAAATCATTTTGTCATGTATGTG
ACGATGTCTTCCACTTGGCAAATCCATTACATGATAGATTGTCCTCTGGC
AGGTACCTAGATGTTCTGGAGTGTTTGGATGAGAAGAAAGAAATAATACC
AACAATTCGCTATCCACCACTTAAATGTGTTTGTTCAGTTTGTGGCAGTA
AGGAGGTCACCAAGATCGCTACAGATGAGTATTGCATTGTCGTTACATTG
AAAGAAAGCTACCATCAATCCGACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17427MSTRG.17427Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17427.2.p4MSTRG.17427.2.p4-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17427.2.p4.exon1MSTRG.17427.2.p4.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17427.2.p4.exon2MSTRG.17427.2.p4.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17427.2.p4.exon3MSTRG.17427.2.p4.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17427.2.p4.exon4MSTRG.17427.2.p4.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17427.2.p4.exon5MSTRG.17427.2.p4.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17427.2.p4.exon6MSTRG.17427.2.p4.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17427.2.p4.exon7MSTRG.17427.2.p4.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17427.2.p4.exon8MSTRG.17427.2.p4.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17427.2.p4.exon9MSTRG.17427.2.p4.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17427.2.p4.exon10MSTRG.17427.2.p4.exon10Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17427.2.p4.exon11MSTRG.17427.2.p4.exon11Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17427.2.p4.exon12MSTRG.17427.2.p4.exon12Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17427.2.p4.exon13MSTRG.17427.2.p4.exon13Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17427.2.p4.exon14MSTRG.17427.2.p4.exon14Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175_pilongenomesc0000175_pilon:164513..171200 +