MSTRG.17425.1.p1 (mRNA) -

Overview
NameMSTRG.17425.1.p1
Unique NameMSTRG.17425.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000175_pilon:150078..153660+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17425.1.p1 ID=MSTRG.17425.1.p1|Name=MSTRG.17425.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3583bp|location=Sequence derived from alignment at sc0000175_pilon:150078..153660+ (Clytia hemisphaerica_ch_hm2_pilon)
AATTGGGTGGGGCTAAGCATATAAAACAAACTTTTGTTTGCTATTTGATG
AGTTAGGTAGAGGCTGTGAAGTAAAAAGCAAGATGGCGAtccttcaaatt
tgtatttttgccGTTGTTTTACATGTTATTTTAGCTGGCACTGGGGAAAA
AGGTATATTACTTTTAAAGTGTCTTCACCAAAAGCGAGGATATAAGTACG
TTTATTTTGGAGACGATTTTGATTACTTTGGAGATCCAAAGTTATTTACT
TTGTTAACCAGCTTGATTTTTAACCCGGTCTGTACTAGACAATGCTATCG
TCAGtataatatattgccattatataatatagtttgtatattataaaacg
taatgtGTTGCGCAGCGGGTAGAGTTTGTGTTTACAAGACAACAGCTACC
CCCGaaaaaaatcccgtcttcacgtttgttcctcttagatgaaactcgtc
ttagactatagcatagtctaggtATGTACGAGTTTTGTCTCGGTCCTTAT
TTGAGcacgggcaatatttctcagtacagtcCTAACTAACCGGTCCTTAT
TTTATTAGAGTCACACaaaaaaaTAATCGATCACAAATCACCAAATTTGG
TTTTGGTTTGTTTCTTGAAAGGTTGTCAATTTTCCAGATTACCTTGTCAT
AGGTACCCTTACGATTACCATTTCCATCTACACCCCCTAGTCCGTCCCTG
GAAAAAGTAACTTTAACATCAGTCATCTATTTTCATCCAGATTGGCCCCT
TTAACTAGCGGAACGAAACAGTAATTGATAACTTCTCACCAAGTGTTTTG
TTTTGTGCTTGATTGATTAGTTATATATTTTCATGCAGGTTACCTTGTTA
CAAAGAATTACAAGGTTGATCATCTTCCAACATGGTCACCAACTTGGTAC
GTCGCATTTGAAGTGAAACCTCTTTATCGCTACTCACATTGGTCCAATCT
TCTTCATCTTACTGCGTCCGGTCAAAACCTTAAACATTTCGGGGATAGGA
TTCCAGCAGTATTCTTTATACCACACCAACAGAAGCTTCACATATGTACA
GGATTGAACGGGAACAAAAATTTCTGCTACAACTCGAAAACTTTACCGCT
TCATGAATGGGCTCTGGTAGAGATAGCTCAGTTCCAAAAAGGAGTCAAGT
ACTATTACCAGATTCGTATTAATGGAAAACAAGTACTTAAAGTGTTGAAC
AAGAATGCTCGTTATTTCATGGGAGTTGATGTATATCGTGGCGATCCATT
CTATCGACAGGCACCGGCAAAGATTCGAAATTTCGTCTACCATAATTTAC
CAAGTGGTAAGTGAGATATTTAAGAGAGTATTTTAGTCCATTTTCCCCAA
GAAGTAAGGCTTTAGAGGAAGGTATCAACATAGCCAGTTCATGGTCAATT
CGGTTCTGAAAAGTCCtttttttCGCAATTATTATCCGGCCTAATTCTAA
TGGTAATACCATATATAACCAAGACTTTACCGgggtataaaatatttttt
aattgaatcaGACAacttttattcaatcttttcactaaaatttctaCCAG
GGATGATCTGAAAGGTTATTGAGATGGATATTCATTTTTTAAGTATAGCC
TAGACATGCGTCAAATGACaagtttttatgacttttttttaaatgtcccT
TTGATTGTTCTCATAACTTTGTCAATAAACCTTTATGAAGATTTCTATAT
TGTTTGAATAAGACATGAAACTATCAGTATTGAAACAATCATTTTAATTA
CTTCTACTATGATAGGAAGATTTCTAATAATACTAAGACCAACCAATTCC
AATATAATTCTTTTAACTTTCAGCTTTCAAACTCACCCGTAACACCATCA
TTAAAGGCTACAAAGCATATTTTACCGAATACCAAGTTTCATTCAACATT
AAACCGTTCGGTAAAGTCAAAAAATGGTCTAGCATTCTTCACGTGACCGA
ATGGGATGACATCACGGCTTACGGTAACCGAATCCCTGCTGTCTTCTTCT
GGCCAAATACAAACAGGTTACATATTTGTTCAGCCATCAATGGTAACAAA
AATTATTGCTGGAACGGTAAAACAGATCTTCCACAAAACAAATTCACCAA
TATCAACATCCGACAACATTTGGTTGGTAGCCAATACCATTACAGCATCT
TGATCAATGGGAAACAAGTTTTCAAGATTGTGAATACAAAACCGATTACC
TTGTATCGTGCTAAGGTTTATCTTTCCAATCCATGGTACCTTGCAGCAGA
GGCGTTTGTAAAAAACGTGGTAGTAACGACGTCATCAAAAGGTAAATTAA
AAACGAGGCTGTCAAGCCCTTTCTTAATCTTTTACGCTGATTATGCATCT
TTTGTCTCTTATAAAGCAATTGGGTCATATTTAAGACTTTAAACAGATTT
TGATGCCTTTCTGACATCCCTTTCTCATcatcacagacccactgggaacc
caaaatatcgtcccagtGGAAGATTACACTTCAATTTTTcccccccgctg
aaaataataagATAAGCAAATCCTTACTGAAAGATTTTTCCAATCTCCAC
TGAATTTTATGGCTAGAAAACAacggaattcaaatccccagccataaaga
gatatgggaatatcaatccacaTCGACTTTTAGTCCGtttttttttACCC
CATTGGCAGATAAAATCTATCATTTTATTAGATTATAAGATTTCGTGAAA
TGAAGGTGTTTTCAGTTTGATTCCGCTCTGCTCAGGAATTAAGACAAGGA
TAAATGCAGCAATCTAGTCGGTTTGCCCTCAATTGCCCTCGGATACTACC
TTCAGAGGGATGTTTATAAAGGATGTCCAATAGTACCTTGTGAGAAAGTG
TATAGGCAAGTAAAGTCTTCTTCCAAAatatctttgaataaaaattccaa
aatatcattgaaatttatattttctatttaaggtggttttaaacttttaa
aagggAAAATGATCCGTGTCATACCAAGAATACAAAGAGAATGGTATCTC
TCATTCGACATCAAGCCTGAAAACGCTGTCGTCCATCACTGGGCTAGTAT
CCTTCATATGACTACCGGTGGCAACCATGGTAGGATCGGGCAACGGATCC
CAGGTATCTGGTTTCACGGCAAAACCCGTAAGCTTCATGTATGTTATGCC
ATCAACAAGAATCCTAACCATTGCTTCAATACGCTTTATAATTTAACACC
GAACCGCTACAGCAATATTCAAGTTTTACAAGTCTTTGATCGTTTGGCAA
AGAAATACAAATTTAAAGTGCTGgtcaataataattttcttgCTGAAGTT
TGGAACTCGAACCCACTCTCTTTTCAGAATGTTCAAATGTGGGCAGCAGA
TCCTTGGTATCTTACTGCAAAGGCTTCATTGAGGAATATCGTCTTCAGAA
ACTTATGCTAGAAAACAAAAGACATTAAAAAACAAACGACTTATCATGAG
GTTGTGTTCGAATTAAATAAAATTAACTTTAGTttagaaatttgtaaaat
ttattaATTGTAAATAGTGTGGATGTGTGCTATGACGATTAGAAATAATG
ATTGAAGAATGAATGcaagaaattaaaaacaaa

Coding sequence (CDS) from alignment at sc0000175_pilon:150078..153660+

>MSTRG.17425.1.p1 ID=MSTRG.17425.1.p1|Name=MSTRG.17425.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5940bp|location=Sequence derived from alignment at sc0000175_pilon:150078..153660+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCGAtccttcaaatttgtatttttgccGTTGTTTTACATGTTATTTT
AGCTGGCACTGGGGAAAAAGGTTACCTTGTTACAAAGAATTACAAGGTTG
ATCATCTTCCAACATGGTCACCAACTTGGTACGTCGCATTTGAAGTGAAA
CCTCTTTATCGCTACTCACATTGGTCCAATCTTCTTCATCTTACTGCGTC
CGGTCAAAACCTTAAACATTTCGGGGATAGGATTCCAGCAGTATTCTTTA
TACCACACCAACAGAAGCTTCACATATGTACAGGATTGAACGGGAACAAA
AATTTCTGCTACAACTCGAAAACTTTACCGCTTCATGAATGGGCTCTGGT
AGAGATAGCTCAGTTCCAAAAAGGAGTCAAGTACTATTACCAGATTCGTA
TTAATGGAAAACAAGTACTTAAAGTGTTGAACAAGAATGCTCGTTATTTC
ATGGGAGTTGATGTATATCGTGGCGATCCATTCTATCGACAGGCACCGGC
AAAGATTCGAAATTTCGTCTACCATAATTTACCAAGTGCTTTCAAACTCA
CCCGTAACACCATCATTAAAGGCTACAAAGCATATTTTACCGAATACCAA
GTTTCATTCAACATTAAACCGTTCGGTAAAGTCAAAAAATGGTCTAGCAT
TCTTCACGTGACCGAATGGGATGACATCACGGCTTACGGTAACCGAATCC
CTGCTGTCTTCTTCTGGCCAAATACAAACAGGTTACATATTTGTTCAGCC
ATCAATGGTAACAAAAATTATTGCTGGAACGGTAAAACAGATCTTCCACA
AAACAAATTCACCAATATCAACATCCGACAACATTTGGTTGGTAGCCAAT
ACCATTACAGCATCTTGATCAATGGGAAACAAGTTTTCAAGATTGTGAAT
ACAAAACCGATTACCTTGTATCGTGCTAAGGTTTATCTTTCCAATCCATG
GTACCTTGCAGCAGAGGCGTTTGTAAAAAACGTGGTAGTAACGACGTCAT
CAAAAGgtggttttaaacttttaaaagggAAAATGATCCGTGTCATACCA
AGAATACAAAGAGAATGGTATCTCTCATTCGACATCAAGCCTGAAAACGC
TGTCGTCCATCACTGGGCTAGTATCCTTCATATGACTACCGGTGGCAACC
ATGGTAGGATCGGGCAACGGATCCCAGGTATCTGGTTTCACGGCAAAACC
CGTAAGCTTCATGTATGTTATGCCATCAACAAGAATCCTAACCATTGCTT
CAATACGCTTTATAATTTAACACCGAACCGCTACAGCAATATTCAAGTTT
TACAAGTCTTTGATCGTTTGGCAAAGAAATACAAATTTAAAGTGCTGgtc
aataataattttcttgCTGAAGTTTGGAACTCGAACCCACTCTCTTTTCA
GAATGTTCAAATGTGGGCAGCAGATCCTTGGTATCTTACTGCAAAGGCTT
CATTGAGGAATATCGTCTTCAGAAACTTATGCTAGATGGCGAtccttcaa
atttgtatttttgccGTTGTTTTACATGTTATTTTAGCTGGCACTGGGGA
AAAAGGTTACCTTGTTACAAAGAATTACAAGGTTGATCATCTTCCAACAT
GGTCACCAACTTGGTACGTCGCATTTGAAGTGAAACCTCTTTATCGCTAC
TCACATTGGTCCAATCTTCTTCATCTTACTGCGTCCGGTCAAAACCTTAA
ACATTTCGGGGATAGGATTCCAGCAGTATTCTTTATACCACACCAACAGA
AGCTTCACATATGTACAGGATTGAACGGGAACAAAAATTTCTGCTACAAC
TCGAAAACTTTACCGCTTCATGAATGGGCTCTGGTAGAGATAGCTCAGTT
CCAAAAAGGAGTCAAGTACTATTACCAGATTCGTATTAATGGAAAACAAG
TACTTAAAGTGTTGAACAAGAATGCTCGTTATTTCATGGGAGTTGATGTA
TATCGTGGCGATCCATTCTATCGACAGGCACCGGCAAAGATTCGAAATTT
CGTCTACCATAATTTACCAAGTGCTTTCAAACTCACCCGTAACACCATCA
TTAAAGGCTACAAAGCATATTTTACCGAATACCAAGTTTCATTCAACATT
AAACCGTTCGGTAAAGTCAAAAAATGGTCTAGCATTCTTCACGTGACCGA
ATGGGATGACATCACGGCTTACGGTAACCGAATCCCTGCTGTCTTCTTCT
GGCCAAATACAAACAGGTTACATATTTGTTCAGCCATCAATGGTAACAAA
AATTATTGCTGGAACGGTAAAACAGATCTTCCACAAAACAAATTCACCAA
TATCAACATCCGACAACATTTGGTTGGTAGCCAATACCATTACAGCATCT
TGATCAATGGGAAACAAGTTTTCAAGATTGTGAATACAAAACCGATTACC
TTGTATCGTGCTAAGGTTTATCTTTCCAATCCATGGTACCTTGCAGCAGA
GGCGTTTGTAAAAAACGTGGTAGTAACGACGTCATCAAAAGgtggtttta
aacttttaaaagggAAAATGATCCGTGTCATACCAAGAATACAAAGAGAA
TGGTATCTCTCATTCGACATCAAGCCTGAAAACGCTGTCGTCCATCACTG
GGCTAGTATCCTTCATATGACTACCGGTGGCAACCATGGTAGGATCGGGC
AACGGATCCCAGGTATCTGGTTTCACGGCAAAACCCGTAAGCTTCATGTA
TGTTATGCCATCAACAAGAATCCTAACCATTGCTTCAATACGCTTTATAA
TTTAACACCGAACCGCTACAGCAATATTCAAGTTTTACAAGTCTTTGATC
GTTTGGCAAAGAAATACAAATTTAAAGTGCTGgtcaataataattttctt
gCTGAAGTTTGGAACTCGAACCCACTCTCTTTTCAGAATGTTCAAATGTG
GGCAGCAGATCCTTGGTATCTTACTGCAAAGGCTTCATTGAGGAATATCG
TCTTCAGAAACTTATGCTAGATGGCGAtccttcaaatttgtatttttgcc
GTTGTTTTACATGTTATTTTAGCTGGCACTGGGGAAAAAGGTTACCTTGT
TACAAAGAATTACAAGGTTGATCATCTTCCAACATGGTCACCAACTTGGT
ACGTCGCATTTGAAGTGAAACCTCTTTATCGCTACTCACATTGGTCCAAT
CTTCTTCATCTTACTGCGTCCGGTCAAAACCTTAAACATTTCGGGGATAG
GATTCCAGCAGTATTCTTTATACCACACCAACAGAAGCTTCACATATGTA
CAGGATTGAACGGGAACAAAAATTTCTGCTACAACTCGAAAACTTTACCG
CTTCATGAATGGGCTCTGGTAGAGATAGCTCAGTTCCAAAAAGGAGTCAA
GTACTATTACCAGATTCGTATTAATGGAAAACAAGTACTTAAAGTGTTGA
ACAAGAATGCTCGTTATTTCATGGGAGTTGATGTATATCGTGGCGATCCA
TTCTATCGACAGGCACCGGCAAAGATTCGAAATTTCGTCTACCATAATTT
ACCAAGTGCTTTCAAACTCACCCGTAACACCATCATTAAAGGCTACAAAG
CATATTTTACCGAATACCAAGTTTCATTCAACATTAAACCGTTCGGTAAA
GTCAAAAAATGGTCTAGCATTCTTCACGTGACCGAATGGGATGACATCAC
GGCTTACGGTAACCGAATCCCTGCTGTCTTCTTCTGGCCAAATACAAACA
GGTTACATATTTGTTCAGCCATCAATGGTAACAAAAATTATTGCTGGAAC
GGTAAAACAGATCTTCCACAAAACAAATTCACCAATATCAACATCCGACA
ACATTTGGTTGGTAGCCAATACCATTACAGCATCTTGATCAATGGGAAAC
AAGTTTTCAAGATTGTGAATACAAAACCGATTACCTTGTATCGTGCTAAG
GTTTATCTTTCCAATCCATGGTACCTTGCAGCAGAGGCGTTTGTAAAAAA
CGTGGTAGTAACGACGTCATCAAAAGgtggttttaaacttttaaaagggA
AAATGATCCGTGTCATACCAAGAATACAAAGAGAATGGTATCTCTCATTC
GACATCAAGCCTGAAAACGCTGTCGTCCATCACTGGGCTAGTATCCTTCA
TATGACTACCGGTGGCAACCATGGTAGGATCGGGCAACGGATCCCAGGTA
TCTGGTTTCACGGCAAAACCCGTAAGCTTCATGTATGTTATGCCATCAAC
AAGAATCCTAACCATTGCTTCAATACGCTTTATAATTTAACACCGAACCG
CTACAGCAATATTCAAGTTTTACAAGTCTTTGATCGTTTGGCAAAGAAAT
ACAAATTTAAAGTGCTGgtcaataataattttcttgCTGAAGTTTGGAAC
TCGAACCCACTCTCTTTTCAGAATGTTCAAATGTGGGCAGCAGATCCTTG
GTATCTTACTGCAAAGGCTTCATTGAGGAATATCGTCTTCAGAAACTTAT
GCTAGATGGCGAtccttcaaatttgtatttttgccGTTGTTTTACATGTT
ATTTTAGCTGGCACTGGGGAAAAAGGTTACCTTGTTACAAAGAATTACAA
GGTTGATCATCTTCCAACATGGTCACCAACTTGGTACGTCGCATTTGAAG
TGAAACCTCTTTATCGCTACTCACATTGGTCCAATCTTCTTCATCTTACT
GCGTCCGGTCAAAACCTTAAACATTTCGGGGATAGGATTCCAGCAGTATT
CTTTATACCACACCAACAGAAGCTTCACATATGTACAGGATTGAACGGGA
ACAAAAATTTCTGCTACAACTCGAAAACTTTACCGCTTCATGAATGGGCT
CTGGTAGAGATAGCTCAGTTCCAAAAAGGAGTCAAGTACTATTACCAGAT
TCGTATTAATGGAAAACAAGTACTTAAAGTGTTGAACAAGAATGCTCGTT
ATTTCATGGGAGTTGATGTATATCGTGGCGATCCATTCTATCGACAGGCA
CCGGCAAAGATTCGAAATTTCGTCTACCATAATTTACCAAGTGCTTTCAA
ACTCACCCGTAACACCATCATTAAAGGCTACAAAGCATATTTTACCGAAT
ACCAAGTTTCATTCAACATTAAACCGTTCGGTAAAGTCAAAAAATGGTCT
AGCATTCTTCACGTGACCGAATGGGATGACATCACGGCTTACGGTAACCG
AATCCCTGCTGTCTTCTTCTGGCCAAATACAAACAGGTTACATATTTGTT
CAGCCATCAATGGTAACAAAAATTATTGCTGGAACGGTAAAACAGATCTT
CCACAAAACAAATTCACCAATATCAACATCCGACAACATTTGGTTGGTAG
CCAATACCATTACAGCATCTTGATCAATGGGAAACAAGTTTTCAAGATTG
TGAATACAAAACCGATTACCTTGTATCGTGCTAAGGTTTATCTTTCCAAT
CCATGGTACCTTGCAGCAGAGGCGTTTGTAAAAAACGTGGTAGTAACGAC
GTCATCAAAAGgtggttttaaacttttaaaagggAAAATGATCCGTGTCA
TACCAAGAATACAAAGAGAATGGTATCTCTCATTCGACATCAAGCCTGAA
AACGCTGTCGTCCATCACTGGGCTAGTATCCTTCATATGACTACCGGTGG
CAACCATGGTAGGATCGGGCAACGGATCCCAGGTATCTGGTTTCACGGCA
AAACCCGTAAGCTTCATGTATGTTATGCCATCAACAAGAATCCTAACCAT
TGCTTCAATACGCTTTATAATTTAACACCGAACCGCTACAGCAATATTCA
AGTTTTACAAGTCTTTGATCGTTTGGCAAAGAAATACAAATTTAAAGTGC
TGgtcaataataattttcttgCTGAAGTTTGGAACTCGAACCCACTCTCT
TTTCAGAATGTTCAAATGTGGGCAGCAGATCCTTGGTATCTTACTGCAAA
GGCTTCATTGAGGAATATCGTCTTCAGAAACTTATGCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17425MSTRG.17425Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17425.1.p1MSTRG.17425.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17425.1.p1.exon1MSTRG.17425.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17425.1.p1.exon2MSTRG.17425.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17425.1.p1.exon3MSTRG.17425.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17425.1.p1.exon4MSTRG.17425.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175_pilongenomesc0000175_pilon:150078..153660 +