MSTRG.174.1.p1 (mRNA) -

Overview


Name	MSTRG.174.1.p1
Unique Name	MSTRG.174.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000001_pilon:3321401..3324028+
coding sequence from alignment at sc0000001_pilon:3321401..3324028+

mRNA from alignment at sc0000001_pilon:3321401..3324028+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.174.1.p1 ID=MSTRG.174.1.p1|Name=MSTRG.174.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2628bp|location=Sequence derived from alignment at sc0000001_pilon:3321401..3324028+ (Clytia hemisphaerica_ch_hm2_pilon)
ctcTTTTATCGATCCACCGAAATTTAAATATGAGGATTTGAAGACTGCTG
CAGAAGTTTTTGAGAAAGAGgattttttaataacttttgacTTGACAAGT
GGTTATCATCACGTACCGATTAATGAGGACTTTCAGAGTTTTCTCGGTTT
CGCGTGGAGCTTCAAAGGtgtaacaaaatattttgttttttgtgtccTGC
CTTTTGGATTAAATATTGCCTGCtggatttttacaaagctcatgCGTCAG
CTAGTAAAGAGATGGCGCCGTCTTGGGATCAGATGTGTTATGTACTTAGA
TGACGGTATAGcaggtgagaaaaattttgacaaagcTATTTCCAACCGAA
GCATTATCCTTCGTGATTTATGGGCCGCAGGTCTTactattaattttcaa
aaatccagtcTCAGGCCAGAACAAAGAAAATCGTGGCTAGGATTTATCAT
AGACACAACAAAAATGACATTTACAGTTCCTGAAGTAAAATTAGAGCGTC
TCAATTCCGATATAATCTTTACATTACAAGAAGGTTGTTCATcttccaga
aaaatttcaaaaatagcaGGTCAAATTATATCCATGTCTGGTTCTATTGG
TCCACCTGCTTATCTATTCACGAAACAAATGTATAAGTTTGTTGAGTCTA
ATGATACTTGGGATAAAATTCATCTTCTACCTTATGCCGTTGAGCATGAA
CTgaacttttggaaaaataatttatcaaaaactaaatcattccgtatcaa
aaccaaacccgaaatcacaaaaatcGTTTTTTCTGACGCCAGTGAAACTG
GTTATGGAGGATATACAgttgaaaaattgggaaaaattatCGCAAAAGGA
AGCTTCAACGAATTAGAAAGTAAAACTAGTTCCACCTTTCGAGAATTGCT
CgctattaaaaatgttttggaGTCTCTTACAGAATTCGTTAAAAATGAAA
CTATAGAATGGTTCACAGACAATGAAAACTCTTGCAGAATCATCAAATCC
GGTAGCACAAAACAACATCTTCAAAACTTAGCGatcgagatattcaactt
ttgtGTCATAAATAATACAACTATTTTTCCTACTTGGATCCCTAGGGACG
AAAACTGTGTTTCAGATAGGATCTCGAAATCCATCGATACAGACAATTGG
TCTATAGACATGGAAAGTTTTAACTATATACTAAGTCAATTCGGAGTTAT
TACAGTGGATAGGTTTGCAGATAACCTCAATGCAAAAGTGGAGCGATTCA
ATTCAAGAGAATTTTGTCCCGGATCATCCGGAGTTAACGCTTTTCTTATC
ACTGGGGAAACAATGAAATTAATTGGCTTTGTCCACCAGTACATTTGATT
GGAAGAACTATCTCTCATTTAAAAAACTGCCAAGGAAAAGGCATTCTTTT
TGTACCTTTATGGCCGTCTGCATACTATTGGCCATTGCTCACTTCAAATG
GGAAAGAATTTAAACGTTTTGTACAACGCTTTTTAGTTTTAGATCCTTTT
TTCATAAACTATTCAAAGTTACGAAagttaattgtatttttgatGGGTTT
GCAAATTTTTATTCTCTTGCACTGTATATTGATTTTACAACATAACATTC
TTAAGAAATCTCGTATGCTCTTGCAAAATGCTGTTTTTATATCCTTTTTG
ATGCAATTTCAAGTGATCATATCATTGTTGTATATGAGATCAAATGCATG
AAACTGTTGTCTAGATGACTATGTATCAATGAACTGAAAAAcgttttatt
tctatttttttcacgcaaaaattaattaacaATCATGATTTGACGACGAC
ACAAGCTGTGGTATCAATGCTTTGTTGCAATACCAATTATGGTATGAATG
CTTTGTCGCAATACCAATTATGGTATCAATGCTTTGTTGCAATACCAATT
ATGGTATCAATGCTTTGTTGCAATACCAATTACGGTATCAATGCTTTGTT
GCAATACCAACTATGCTATCGATGTTTTGTTGCAATTTGAATTATGGTAT
CAATGCTTTGTGCAATACCAACTGTAATATCAATGCTCTGTTACAATATC
AATTATGGTATCAATGCTCTGTTGCAATATCAATTATGGTATCAATGCTT
TGTTGCAATACCGACTATGGTATCAATGCTTTGTTGCAATACCACATTAT
CTACAGGTAtaagagttatttttaaaacttttttcatccttattttctTA
AGGCATCCCCGAAGAACCCTCACTAGTGGAAAGGATTGAAGGCATCAAAG
ACGAAAGACTTAGAGAAAAGGCAACTACCCTTCCAGAACTTCTCGATGCT
GCCTACGCAAAATCGACCCTCAACAAGTATAAGTCTGGTTGGAAAAAGTG
GAAACAGTGGACCGAAAATTCCAGCGAAATATCCCACCTCCCCGCTGACC
CCTTTTTTGTCGCTATCTATCTCAACGACCTGACATCAAACAACGCAACA
GAGGGAGCTTTAACAACAGCAATCCTAGGGATCAGATGGGGCCATCAATC
ATCTGGTTTTTACTCTCCCACAGGAAGTCCTTTAGTCAAACTGGCATTCG
AGGGTGGCAAACGACTAATTTCGTCCAAAGAtggaaatccaaaaagaatG
CGTAAAGAGCCTCTCACAAcagacttaa

Coding sequence (CDS) from alignment at sc0000001_pilon:3321401..3324028+

>MSTRG.174.1.p1 ID=MSTRG.174.1.p1|Name=MSTRG.174.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1347bp|location=Sequence derived from alignment at sc0000001_pilon:3321401..3324028+ (Clytia hemisphaerica_ch_hm2_pilon)
tcTTTTATCGATCCACCGAAATTTAAATATGAGGATTTGAAGACTGCTGC
AGAAGTTTTTGAGAAAGAGgattttttaataacttttgacTTGACAAGTG
GTTATCATCACGTACCGATTAATGAGGACTTTCAGAGTTTTCTCGGTTTC
GCGTGGAGCTTCAAAGGtgtaacaaaatattttgttttttgtgtccTGCC
TTTTGGATTAAATATTGCCTGCtggatttttacaaagctcatgCGTCAGC
TAGTAAAGAGATGGCGCCGTCTTGGGATCAGATGTGTTATGTACTTAGAT
GACGGTATAGcaggtgagaaaaattttgacaaagcTATTTCCAACCGAAG
CATTATCCTTCGTGATTTATGGGCCGCAGGTCTTactattaattttcaaa
aatccagtcTCAGGCCAGAACAAAGAAAATCGTGGCTAGGATTTATCATA
GACACAACAAAAATGACATTTACAGTTCCTGAAGTAAAATTAGAGCGTCT
CAATTCCGATATAATCTTTACATTACAAGAAGGTTGTTCATcttccagaa
aaatttcaaaaatagcaGGTCAAATTATATCCATGTCTGGTTCTATTGGT
CCACCTGCTTATCTATTCACGAAACAAATGTATAAGTTTGTTGAGTCTAA
TGATACTTGGGATAAAATTCATCTTCTACCTTATGCCGTTGAGCATGAAC
Tgaacttttggaaaaataatttatcaaaaactaaatcattccgtatcaaa
accaaacccgaaatcacaaaaatcGTTTTTTCTGACGCCAGTGAAACTGG
TTATGGAGGATATACAgttgaaaaattgggaaaaattatCGCAAAAGGAA
GCTTCAACGAATTAGAAAGTAAAACTAGTTCCACCTTTCGAGAATTGCTC
gctattaaaaatgttttggaGTCTCTTACAGAATTCGTTAAAAATGAAAC
TATAGAATGGTTCACAGACAATGAAAACTCTTGCAGAATCATCAAATCCG
GTAGCACAAAACAACATCTTCAAAACTTAGCGatcgagatattcaacttt
tgtGTCATAAATAATACAACTATTTTTCCTACTTGGATCCCTAGGGACGA
AAACTGTGTTTCAGATAGGATCTCGAAATCCATCGATACAGACAATTGGT
CTATAGACATGGAAAGTTTTAACTATATACTAAGTCAATTCGGAGTTATT
ACAGTGGATAGGTTTGCAGATAACCTCAATGCAAAAGTGGAGCGATTCAA
TTCAAGAGAATTTTGTCCCGGATCATCCGGAGTTAACGCTTTTCTTATCA
CTGGGGAAACAATGAAATTAATTGGCTTTGTCCACCAGTACATTTGA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.174	MSTRG.174	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.174.1.p1.exon1	MSTRG.174.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.174.1.p1	MSTRG.174.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000001_pilon	genome	sc0000001_pilon:3321401..3324028 +

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MSTRG.174.1.p1 (mRNA) -