MSTRG.17083.1.p1 (mRNA) -

Overview
NameMSTRG.17083.1.p1
Unique NameMSTRG.17083.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000168_pilon:250418..252612-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17083.1.p1 ID=MSTRG.17083.1.p1|Name=MSTRG.17083.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2195bp|location=Sequence derived from alignment at sc0000168_pilon:250418..252612- (Clytia hemisphaerica_ch_hm2_pilon)
AAAAAGGGTTCACTTTGTATGTAAAATTCACATTCAAATCTTCGGTTTGA
ACAAACTGTTTGACTTGTCAAATCAACAACCAACTACAGTATCAATCACG
TTACGTTTTATATTGATCCTGGCAACAATCATCAGTGCAATTTGTAAGTA
AACCATTTACAAGAGACTCCCAAAAACGATGAAATTTTGCGAAATATTTA
TAAGATGAATTTTAAATATCAATGATTAAGAAGAACATTTTCCTAAGCTT
TTTAAATATTTTCAGACCAAATATTATGTTAATATAAATATGTAAAATAA
TTTGACAAAATATATTTTTTGTCTTATGCTCGTTATCAATTATTTTATAA
AAACTTCCCTACCCCACTATAATTTTTAGATTTTGAAAATCTTTGTTATC
GTGTTATTTTCGTCATTTTTTTAGATGCACAGGGACAATGTGGAGTTTCC
AAAGTTCCTCAAAGTCGTGTTGTGAACGGAGTTGAAGCACCACAAGGAGC
TTGGCCATGGATTGTCTCATTGCAAACTTCCAGTGGATTTCATTTCTGTG
GTGGTACCATCCTTTCACCGACTTGGGTAAATTTAATTAAGGATTTCCCA
TGCAAACTTAACTTGTGCAACCATTATCTATAATAGGAATGTGATTTCAA
CATTCCTACTTTTCTTCCTTTACGAAAATAAAGTCTAATATAATCACAAC
AAAAGTATACAAAGTGTGTAAAAATCTAAATCCAACACAACAACGTCTTT
CCATAGATTATGACTGCGAGCCATTGCATCGATAACAACCCAACAGCAAT
CGCCGTAGTAGCGGGCGCACATAACATCAAAGCTATGGAATGGTCACAAC
AAAAACAATGGGCTAAAAGATACATATTGCACCCAAACTACAGGAGAAGT
GATTTTTATGCTGATATTGCCTTGATCGAATTAAGGAGACCATTCGTATT
CAACGATCGAGTTAACAGACCATGTCTTCCATCAGGATTTAACGATTACC
CACCTGTTGGCACGTGGTGTTATATTGCTGGTGAGATATTATTTCCTTTT
GAGACTCAAATTTTACATACCCTTTTCACAGATCCGGTAGGATTTTTTAG
CAAGCGGGGTAAAAATATCGGACCAAAACTCAACGGGGATTGATATTCCA
ATGTTTTTTATGGCTGTAGATTTGAATTCCATTGTTTTAGAGTCACAAAA
CTCAGTGGGATGGATAAATAACACAATATTTTACAGTAATGACTTGCTTA
TCTGATTATTTTTAGCTGGGACAAAAATTAGAGTATAATTTTCCACAGGG
CACGATATTTTTTCAGTGGGAAGGGGTCACAGTGGCTCTGTGAGAAGGGG
GTGTAATTTTGTTGCATAGGGTTAGTACTTCAATATTACAGGTTCTATTA
CTTGCCAGTTATTTTACAAACTTTGAAGAGTATAATTTCCCGGATGTATT
TTTTAATCATTTTCCTTTTCGTGTTTTTTTTTTTTCGTTTCTTAGGTCGG
TTTATAACTCACTTATTTAGGAATTCTTCTTTTGTTAAAATCGCAAAGAG
CACTCATTTAATTTCTGAGTTTGGAATTTCTTTTAAAAACGTAAAATTTA
AACGTATTCATCAGAATCGGGTTTGCCATTTTGGTTTAGTTACAAATTCA
AAAGTTACTAGGACCAAAGGAGAATATTGAAACTGTCGCAGAAACTAGTA
TGTAATAAAAAACTTATTTTGAGGTGGGTGGTAGGCTCGATGGCCGGGAG
TCTAACTGCACCCACACACATCAAAATAAGATGAGAAAAATATTTTTATT
GATTGATATTATAATTCTTTTACTCTGAAAGGCTGGGGACAAACACAATA
CAGCCCAATAATCCGACCTGATAAATTACAACAAGCACGACTCCCTATCA
TGGAACAACACGGCAAATACGACACCGTAGCAGGTTTTGGTGTCCAAGGA
AAAGGAAACGCATGTAAAGGTGATTCTGGAGGTCCACTGATGTGTAAGTC
TGCTTCAGGTCAATGGATTGTAGAAGGGGCATTGAGTTGGGGATACAAAG
GCTGTCACAGTGAAAGCGGTTACACACCGTTAACCAAATATTTGAACTGG
GTCAAACAATATGCTCCAATATAGTTTTTACATTATTTTCTTTCCTTCGA
TATTGAAGCGAAAAGAATCGATGAATACTTAAACCTAATTTTGTC

Coding sequence (CDS) from alignment at sc0000168_pilon:250418..252612-

>MSTRG.17083.1.p1 ID=MSTRG.17083.1.p1|Name=MSTRG.17083.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1128bp|location=Sequence derived from alignment at sc0000168_pilon:250418..252612- (Clytia hemisphaerica_ch_hm2_pilon)
GCTGGGGACAAACACAATACAGCCCAATAATCCGACCTGATAAATTACAA
CAAGCACGACTCCCTATCATGGAACAACACGGCAAATACGACACCGTAGC
AGGTTTTGGTGTCCAAGGAAAAGGAAACGCATGTAAAGGTGATTCTGGAG
GTCCACTGATGTGTAAGTCTGCTTCAGGTCAATGGATTGTAGAAGGGGCA
TTGAGTTGGGGATACAAAGGCTGTCACAGTGAAAGCGGTTACACACCGTT
AACCAAATATTTGAACTGGGTCAAACAATATGCTCCAATATAGATGACTG
CGAGCCATTGCATCGATAACAACCCAACAGCAATCGCCGTAGTAGCGGGC
GCACATAACATCAAAGCTATGGAATGGTCACAACAAAAACAATGGGCTAA
AAGATACATATTGCACCCAAACTACAGGAGAAGTGATTTTTATGCTGATA
TTGCCTTGATCGAATTAAGGAGACCATTCGTATTCAACGATCGAGTTAAC
AGACCATGTCTTCCATCAGGATTTAACGATTACCCACCTGTTGGCACGTG
GTGTTATATTGCTGGCTGGGGACAAACACAATACAGCCCAATAATCCGAC
CTGATAAATTACAACAAGCACGACTCCCTATCATGGAACAACACGGCAAA
TACGACACCGTAGCAGGTTTTGGTGTCCAAGGAAAAGGAAACGCATGTAA
AGGTGATTCTGGAGGTCCACTGATGTGTAAGTCTGCTTCAGGTCAATGGA
TTGTAGAAGGGGCATTGAGTTGGGGATACAAAGGCTGTCACAGTGAAAGC
GGTTACACACCGTTAACCAAATATTTGAACTGGGTCAAACAATATGCTCC
AATATAGATGACTGCGAGCCATTGCATCGATAACAACCCAACAGCAATCG
CCGTAGTAGCGGGCGCACATAACATCAAAGCTATGGAATGGTCACAACAA
AAACAATGGGCTAAAAGATACATATTGCACCCAAACTACAGGAGAAGTGA
TTTTTATGCTGATATTGCCTTGATCGAATTAAGGAGACCATTCGTATTCA
ACGATCGAGTTAACAGACCATGTCTTCCATCAGGATTTAACGATTACCCA
CCTGTTGGCACGTGGTGTTATATTGCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17083MSTRG.17083Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17083.1.p1MSTRG.17083.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17083.1.p1.exon4MSTRG.17083.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17083.1.p1.exon3MSTRG.17083.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17083.1.p1.exon2MSTRG.17083.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17083.1.p1.exon1MSTRG.17083.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168_pilongenomesc0000168_pilon:250418..252612 -