MSTRG.17075.1.p2 (mRNA) -

Overview
NameMSTRG.17075.1.p2
Unique NameMSTRG.17075.1.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000168_pilon:108211..112663+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17075.1.p2 ID=MSTRG.17075.1.p2|Name=MSTRG.17075.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4453bp|location=Sequence derived from alignment at sc0000168_pilon:108211..112663+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTTTTCTCAGATTGTTAATTTTCAAGGGTTTTCAGAGGTTCACCGTGTg
cttaagaaaattatgaccatctgttatcaggttacgtTTGGCTCGTTTAG
GTGAATTGTGTTGGTTAACTCATAATTGATTATTTGGGGGTTGGCCAGTT
GCATTaaaaaaaCTTCTTTGTCAAGGATATAATAATTGCAGAGGTGACAG
ATTTAGATTTTGGGTGTTAAGTATTCTAATGTgtacaattttattttatt
ttcattcatagtttattttaataaaaattgtccaaacaaacaacaaatct
GGCACCTGTCGCAGTGAAGAGTTCTGCAAGATTTGCACCCTACAGCCAAA
CCAAAGGGCCCTCCATGGATGTGAAAACTTTTGACGAGAAACGAAACTTA
ATAGTCAACTATTTACCATCAAATCTGACTCAAGATGAAGTGCAACGTTT
ATTCAGTCGTATCGGCCCTGTATCAAATTGTAAATTGAttagaaattttg
agtctggtcAAAGTTTGGGTTATGCTTTCATTGAATATCCCTCAGAGAAT
CTAGCTCTTGAAGCAATCAATACTCTAGATGGGACCAAAATGGAAGGTAA
AACCTTGAAAGTCAGCTATGCACGTCAGTCTTCACCTGATATTAAAAACT
CGAATGTTTATGTAGCTGGACTACCTGATCACATTTCTGAAAATGATCTC
TATGCACTTTTTACACCGTTCGGTAAAATCATCACacacaaacttttaaa
aaactctgacaaaacttctaaaggtgTTGGTTTTGTTCGCTACTCTTTGA
AATCAGAAGCACAGAATGCCATAGAGTGTATGGGTGGCAAGGTACTAGAC
AAATGCAAAACACCATTAACAGTAAAATTAGCTATCCCACCAgtatctaa
acaacaaaattctCTATTGGCATCAACTTCGCAAATCAATGCAATGGCTG
GTATCCCAGGTGTCAGTGCCTTGAGAGGTAGCCTACGTTTTAACCCTTTA
GCACCATCAAACCAAGCTATCACACATACAGGTCAAGTGTTGTCTGCTAT
CTCATCATTGGAGCAACAAACCTTAAGTCCAATTGCTAGCCCTGCGCTCA
TTCAACTCAAAACAACACAACAAGTCATCCCCAATGCCACAACAGCGTCT
CTGACACCTGCTTCTGCTTCACAAGCTTTCACTATTTATATATACGGTTT
ACAAGTACATCATAATGAGCTACACTTGTATGAGCTGTTCGCACCTTTTG
GTGCCATCTTGAATGTTAAACTGATCCGTGATTTAAAGAAAGAAGACAAG
CCAAGCAAAGGGTATGGCTTTATCAATTTTCGTAAATACGAAGACGCCCT
TGCCGCCATCAACTCCTTAAACAACCAAGTATTAGAAGGCAAAGTTTTGC
AAGTTTCTTTCAAGAATGCAGCAACTATGGGTCTTGCAACAGTCCAACAG
CAACACCAACAACAAGCTATTTTATCATCAGCTGGTCTACAACCAAGTCT
ACAACAACAGCAACCACAATTCCAAGCCAGGCCCCACATTCCTcaccacc
atcaccaccaccaccatcaacaacaacatcatCATTTAGCAGCAGCAGGT
CTTCCACATCACGATTCATCCCCGTTGTTCTCCAATTTCCACCACATGAA
ATATCCAAATTAAAAGTGTGACACTAATGGTTGTTTCATTACAATAAGAA
ACACACAAAATACGAGACcatgtttttttgagatttcatTCATGATGGTT
TCAGGGTAAAGAAGGTATGATACTATACATTGAGGGACTTTTGGAGTAAG
GTGTAACTGTTACTAAACTTATACTTTGATTTTTACAAATCGTTACGAAG
CAAGGTTTTGCTTTTATAAAGTTATGCTTTAAAAGTTTGAACACACGAGA
taattcatttatttactttcttCATATTAACATTATGATATAATTTTCtt
gagttattattttttagatagTAGATAATTTTTACTTATTGTTACATTTA
GGTATTGTAGGCATTGTAACTggttctaagttaacttttattatTCTCTT
GATTCGTTATATATTTTTCAGGCAATCGActaaaaatgatgatgaaaaat
gaaaatttgcttaaattGATTACTTCGTTTTTCTATGTATTATTGATATT
AATTAATTGCACTTCCATGTTAAAGATATGTTTTTGCTCCTCATAAGCGC
AGATTCGATAAGAGATTAATGTAATTTGCTGCATTGTTTTGTTTCTGTTC
GATAGGTTTGGCCAAACGAATTCATgtagtaaacaaaaaaaaacttttca
gcatCTTCCTCTTTGTGGATTATCAATTTATGATGTTAATTACATTTTTC
CTTACTTTTAGTTACTAATTATTATTTGGTCCATTTTATTTCATGCTATT
GTTAGTTATTATTAGCTTCTTGTAGTATTGGCGCGTGTgtattatttttt
ccttattacaaattttgtttatttctgaaaaagaaaattttgattttact
gactttattccattttgttttttaattcatattatttttgatattcgaag
aagcaacctcattctttcattttttatcttccaCATTACAGtgtatgaaa
tatttttaaagctaTCACTGATTTATTTATGACTTGTGCCCCTCTAATAG
TTTGCTTCTACTGGTATATTATCTTCATTATCTTAAATTGTTGGGATTTT
ATATTTTAGTGCACTtgtatcaaaattaatttgattttcttatCCATCCC
TACAATGTAGTAGTGTCGCACCAAGATCActttatctttaatttgaattt
tcctttttaaattttcgtcttctaattatactcaattaattttttgatga
aGCTATAATTATTGTATGCTTTATGAGTGTATTATAAAGGGTTGTTTTTT
GATAAGGATACTATCCAGACAAGTTACTAAAAGAGTTGGTATGATATGtt
ttgcgttttgctatgatattgactttgaacgtttgatttattcattttta
tttcattttcattttagtgCAATTTACAACAAGAAAATGCATTTGAAGCG
AATATTAATCTATACTGGACCAGGTACCGAAAAGACGAACATACTTCACC
GTTCGTTGGCTCATGTCCTCGATACAATCAACCCTCATCATAAATTCCAT
GTCGACCTCATCGAGGAAGCTAGCTCCATATCACCAGCTTTGAAACGAGG
CGATACTGAATTATTCATTCTTCCTGGAGGTCGAGATTTACCATATGTCG
ATCACATAAAGACTGATATTATTCGAAACATCAAAGATTACATCCATACA
GGAGGATCTTATCTTGGGATATGCGCTGGTGCTTATTTTTCATGCCAAGA
ATGTATTTTTGACAAGAATGGCCCGCTAGAAGTAGTCGGTCCGCGTGAAA
TGGCTCTTTTTTCGGCAGCCGGAGTCGGTCCTGTTTACCCTGGATTTAAG
TACAATTCTACTAAAGGTTCAATCATGGCTCCTTTAGAGTTCCATTCAAA
ATCTAACAACTTAGCCTCTTGTTTTGCGTATTTTAACGGTGGAGGGGCAT
TCCAGGCTAATATTGAAGACACTGATCCTAACTACGAAATTATATCTTCT
TACAAAGACTTGAAAAACAAAGCTGCTATTGTGTATGGGTCAAAGGGCCT
TGGGAAGGTCTTGCTGTCTTTTGTTCATCCCGAGATGAGTTATAAATTCC
TTGATAAAGATAACTACACAGAATTGCAATGGAATGATATGGTTGCTAAG
GATGATGGGCAATTTCAACTTTGGAAATGGATTATTAATAAGCTTGTTTC
TTTTGATTAAAGGGACCTTCAATTTACCTCttaattgaaaattgtttgaa
taatACTCCCACATTGAAATCTTCTATTACATTTAGTGTACtatgaaatc
atttttaaaatatatttcctgaaaaaaaagaaagatcattGAGTTTCTCA
GGGTACTGTGATCCATGTTATATACTTATAGTTTGAAAAACATCTCAATA
TCGTTCTATGATACTGCTGTTAGTATTTGTTACCCGCAGTTAGTCTAGcg
agctagacgactaattcagacatagtagaaataaagcaaaaggtAATGGA
GGtaaaacaattttagtttatacgaACTAAATCctgtaacaataatcgta
ttatcatataacacctatactacactgtattacacgcattatagacgact
ccagtctaaacTGCAGTCTGATCAATTCTAATTTTTGGTATCGGCTTCTT
CTTAGTCTTGGATATTAAACATTTTGACATTctttaattgtttttgttat
tcaaCAAAATTAGTTCTGCTTTTCAAGtcaacatttttaatgaatatcga
attctaaatgctaatttattttttacatatttttatagattatttttact
tatttatcttacatagaacatttaaaaacataacatttttcacttaaaat
tca

Coding sequence (CDS) from alignment at sc0000168_pilon:108211..112663+

>MSTRG.17075.1.p2 ID=MSTRG.17075.1.p2|Name=MSTRG.17075.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=774bp|location=Sequence derived from alignment at sc0000168_pilon:108211..112663+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCATTTGAAGCGAATATTAATCTATACTGGACCAGGTACCGAAAAGAC
GAACATACTTCACCGTTCGTTGGCTCATGTCCTCGATACAATCAACCCTC
ATCATAAATTCCATGTCGACCTCATCGAGGAAGCTAGCTCCATATCACCA
GCTTTGAAACGAGGCGATACTGAATTATTCATTCTTCCTGGAGGTCGAGA
TTTACCATATGTCGATCACATAAAGACTGATATTATTCGAAACATCAAAG
ATTACATCCATACAGGAGGATCTTATCTTGGGATATGCGCTGGTGCTTAT
TTTTCATGCCAAGAATGTATTTTTGACAAGAATGGCCCGCTAGAAGTAGT
CGGTCCGCGTGAAATGGCTCTTTTTTCGGCAGCCGGAGTCGGTCCTGTTT
ACCCTGGATTTAAGTACAATTCTACTAAAGGTTCAATCATGGCTCCTTTA
GAGTTCCATTCAAAATCTAACAACTTAGCCTCTTGTTTTGCGTATTTTAA
CGGTGGAGGGGCATTCCAGGCTAATATTGAAGACACTGATCCTAACTACG
AAATTATATCTTCTTACAAAGACTTGAAAAACAAAGCTGCTATTGTGTAT
GGGTCAAAGGGCCTTGGGAAGGTCTTGCTGTCTTTTGTTCATCCCGAGAT
GAGTTATAAATTCCTTGATAAAGATAACTACACAGAATTGCAATGGAATG
ATATGGTTGCTAAGGATGATGGGCAATTTCAACTTTGGAAATGGATTATT
AATAAGCTTGTTTCTTTTGATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17075MSTRG.17075Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17075.1.p2MSTRG.17075.1.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17075.1.p2.exon1MSTRG.17075.1.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17075.1.p2.exon2MSTRG.17075.1.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168_pilongenomesc0000168_pilon:108211..112663 +