MSTRG.17070.1.p1 (mRNA) -

Overview
NameMSTRG.17070.1.p1
Unique NameMSTRG.17070.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000168_pilon:31443..37499+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.17070.1.p1 ID=MSTRG.17070.1.p1|Name=MSTRG.17070.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6057bp|location=Sequence derived from alignment at sc0000168_pilon:31443..37499+ (Clytia hemisphaerica_ch_hm2_pilon)
ACCGTATTaacttatttttcttctttatccaTCTTCTCATTTCAGTGTAA
ACAttagaaatatacaaaaaaaaaactgaagaagaagaagaaagaattaA
GTGATGGTTTAAGATCAAAGTTAACAATATGATGGATTGAAATTCCGCGA
TGGAGAAACTTGAAAGCTGTCTCAGGTAAGAGAGATAACTTTGTTCAAAT
TTTGGGTTGTCCAATATCAAGGCAAATATTTTATGGGAGGTGGCAGGTTA
GGAGTGCTGCGCAGGAGAAGATTTATTCAAAGGTTTATTAGAAAATGATG
TACGATGTATTCTCACTTGACTTTCGCCGCCTggaatgtttgaaaatata
ttacaCAACTTTTCAGAAGCTACCtgtaaaaaaagtttccatCGGATCTT
CTTGTAGTACTATTGCTAAAATTATTGAAACAATGCTTCCCTGTAAAAAG
TCTTTCGTGATCCTGTGCCATTTTCATGTTTAACTACCTTATCgaccctt
tttacaccggcccttattggcgttatttttgggctcgaagCGTAATAAGG
GTCGGCGTTAAAAggattgttttggtcaaagcacttgttaaacatttttg
aaaagctaaggggtagggaaatcaaaataacttaggtTCCAATCTTTTTT
ctgacactttggtgtgattttcggacaaatatgacggtctctaGCAAAAA
TAAtagtgtcaaaaatttaatgaaacttttagcttgagaaaacggagacc
tgttgtatatttctcgaaagctctcaaaaaattaagattagagatgtATT
GCgatataggtgatttcagtacttaactcgagatattgagctttaaaaaa
gcgcaaaaactggacaaaacagctgtttctggctgaaaacacTGTTATTA
AGGGTTAATATCTTTTACGACTTTTACGATGATCTATGACATCTTGCATC
GGACGCAACCGAAGGGGGTAGAAATGATGTAGACAAAGTCGCTTAAACAA
TCACAGTGGTCTATTGAATAACTTATTACATCGATGCTTGAATTTTATTA
ATGAAAACATCATCTAATTATGATTTGTCTTTTACTCCATATCTGTTGCC
tagaaacaaaataattaaTCTCATTTGTACACATAATggatttttgactt
gaaaaagaCAAGACGTAGAAATAtcgtttcaaaaaatgtaatagCTTTTA
TTTTAATAGATTTTGTAGGTGCTGGAGTAAAAAATGCGACATTTCTTCTT
ATCTATATCTTTTTTGGATCGGGTGCACTTATCGGTACCCAAGGTAGCAT
TCTTTACCTGATCCCtttttttGTACAGAACGATGAATCATGATCAGTTC
GAACACTTGTTTGTTGTGTATGTTTGACTGAAGTGTGTACGTTGCAACAA
AAGtcttttaaaatatctttcagctaaaaacttaattaaagggacataaa
agtactgacaaaatttgtaaacaaaccgtatgcagcgggatacaaaatcg
aAACAAATGTCacttgtcaaaataaaaaataaaaataaatatggctgatt
ttaattgtttcaattgttttacaagtttgttttggacacgtgattttaat
tgttctctttaatggcacgtggtttgcgcaatgtttacgttttactaatt
ttatgtctctttaaacatgttcttattttcatcatttttatagcattttt
taaccattttactgagaaattgggtgttttgaAGTCCCAAGAGCCTTAAG
ATGTtcaaaacttgttcttaacagtTTGGCCATCGGAGCTTTATGTTCTt
gtacagtttgttcttataaaaaacttgtagTTAAGGGGGCCCTTgcagtt
tgcgtgaatgcgtgaatcggaaagctttgcgtgaacaaaaattgcgtgaa
ttgcgaaaaaaacattgcgtgattgcgtgaattgaaggtccactGGAGGG
GCCTCATCAAGGATAAAGGGGATCTCCGAGCGCCTCTGAGACGCAAGTAT
CAGCGAGTTCTTGTATGATGCTTGTAGACGGTaagttttcatgttttttt
agaTCCTGAATGTCTGAAGACACGTCTTTTGCGAGTAAAAATTATCGGCT
TGGTTTCGAAAATTTATGCCCTGTATACTTTTGTTGAAACAATTTGTTgg
aatttcagcaaaaaatacctaaaaaaaaCACATCGACATTAATAAGATGG
TGAAGAAACACAATAACAAGTTGAAGATCACCAACGATACAGGGCACATT
TTGAAATACCACGGCGAATGGTTTGATTCAGGACGCGTGGCTGATGGATT
TCGATGGCCTGAACTTATCCAAGATGGCGGAAAAGAAACCATACTCTGCT
ATGAAAGTATGTGTTGAATATTTATAATCTGTCTTAATAAAAATAAAGCC
AGGGGGCATCCTGAAATTTGCAATTGTGCTTAGCTCTGTCTTACTCATAT
CAATTTCAAACATTACACAATTTTAGAATATTTCCTGATAAAAGCGATGA
AGATTTAGAGGCGTTCATGATGGCTTATCTCAAAATTAGGCATGGAGACG
AGGTTGTGCGACACTAACAGTTGATAGCTAACAAAAACTCGAAGTCAATA
CTCTGTTGATCTTAGCAATTTACAGTCTCCTTCAAAgacttttaaaaaat
gatatattttaGGGGATTGGGCGATGGCTGGATGTTCAGGGTACGTTCAA
TATCAAATCAGTGGTCAAGTTTTAACGATCGGCTTTTCAAATCCTTCTGC
TGGAAAGAATAAAGTTGGAGTCGGGTTGAATGGTAAAAAGGTGAGATTTT
TAACACTTACCAAAGTCAAACCCAATCCCTTAGTTCgccttttttatgat
tctgatagcgctcatgAACGATTATACTGATGTCCATCAGTAGaaaaaaa
aTGATGGAAGGGTAACACTTACCAAAGTCAAACCCAGCCCCTTAGTTCgc
cttttttatgattctgatagcgctcacgaaaGATTATactgaaaaatgaa
atgatGAAAAAGTGATGGAAGGGGCTCTGGGTTCGTACAAGATTGCTAAG
ACTCACCAAACTAAAAAAGATCGAAATAAAAGTTTTGTAAGATTAACCGT
GCaaaaaaaGGCACCAACGTATGGGGACGTCGAAAGCACCGTACGGATAG
ATCAATAATTTTCAGACACTCACCCTTGCTACTTTCATCCCGCTGATtaa
gaaaccaataaaattagTTTAGTCTTTTCTTAACCCTGCCTGGATGTTTA
TGTGCTTATCTGATCGAGGCAAACAAAATTTTGGAGCTTTGATGTATATT
ATCttattatacatgttttttttataagcaagtgtatgccccttggtcag
gctcgtttATGCTTAAGTTATTAAAGCATCTAggcatagcttatgcttat
tatatgcttatgattcaccccgagccaagtttttagtgaaatttcagaaa
ttctgTGAacgttttttcagattttgggagcagtggaatgtagctagccg
tggaatgtcttattttttacttgacctctaccaaacctttttaaacatat
gaaaaatgacaacttgaaaaatgttCCAAGCTGACATATtatgcttatgt
tatgagtaggaattctgcaaatttgagccttcatatgcttataagcgtta
tgcttacaaaaaaaaatccgaactctcccattctcgcatgaagctttttt
gCTAGCGATTTCTAAACGCACGGCTATGCTTTTTCACGATCTTTCTGTAT
TGAttcaattggtcaattttcagcTCTAAAATGAAAGCCctggaaacatt
ttttttccattttctaatctttattttaaagaacgttttgaaacggtctc
tcatttttttttttttttcattaattttagtcacctcgtcaaaatttagt
cactaagttccgactaataattaagactgACTAACTAACTGTATCTTTGC
TAAGGTAATACTGATATGAAAAGTAggttaaggaaagcttaattataaac
ttttaatttggcccaaagtTTTAGTTGATTCCCTGGACACTCAAAATTAC
CGTAAGACAGAGCAAGTAAAGtgagtaagtctgcgaccgcagtcagaggc
gacccgaaggctcctctttcgatagctatctacccgaagataggggaggg
cgccactctttctccctgtaTTGCTAtctacttacccttgatccttctct
taattgctgagcatcaagcagagaggcatcaagtaccgtTTTGGGAATcc
ttggtatgacccggctgggagttgaacccacaaccttgctcACCGTAGCC
Gggtgctctaccactgcactacggtcgctgaactgtaaaacaaaatcaaa
acagagCAAAGCCCCCCAaatagagcaagtttaccccggacaaggcaaat
tttgtagatttttcacacacccccggacactatatcctccaccccttatg
tacattttctggaagagcccaatgcgcATTTATTGAGCTTTCTATTCGAA
ATAATCACCATAAATATCTTTTGCATAGATATGGGATGAGATGGGATGCA
ACGATTATTCACCACACGTCACGACTTTACAGATGGAAACGTTCGTATTG
AAATGTCATTATTCATGTACTGGAGGTGCTACCAACAACATTGACATCGT
ACTGGAAAATATAGAAAGGTTTGTGATGAATTACGTTatattaagggaag
aaattttggcggaaagaaattttgaaaataaagaaaacgcAAACTGtttt
tttCCTGCCATGAAccaacaaattaaattccctctaaattTCAATTACTG
CATTTATTACCCagatgtgtgctatttcaggccttaaaacatgtttttgg
acctaccttgaggtcctataaatgaaccgttgtccgttcgtccatccgtc
cgttcgtctgttacaagctctCATCCTTCCGTGATTTCTTAGCTCATTTC
TTTTGATTCTCGATATTTGTGGAGTAAAAAGTAAATTATCTTATTGATAA
TTATAGACATGATGATTAGTTTATAATTTGATCAGAAATAAAATACAACC
AATTACTTATATATTTTCAATAGTGTTTATAatttctcccaatagatatg
ctttcattataATATCCGaactattttctcaaaaatctttgattttatta
tcAGGTAAGGTCCATAAAAGTTGATAGCAAttccaaatattttctaaaaa
aattccgGGGCAGCCAATCATCGTGCTGGAAAAACGGGTTTTCTCCGTCC
CTTCGTTCGTTAGGATCTTTTCCATAAATGTCAACTTTCATTATCAGGTA
GGTCTAATCAACACCGATCTTGTTTCTTATCTAATTGCGTTTTTTAGACA
AAAATCTCCTTCATCCCCCAAATTAAATcccccccaaatttagtttttca
agccaaattaaattcctgtcaaaatttctttccacaCTAACATCGGTTaa
aaaaattcgaacaaaatttccaaaaagttacAAAGACGAATTCATTATGT
ACTTTTTCAATTACCTCTGGTAGTGCCATGTAgtcccaacagctgattgg
ttatgAATAATTTAAAATCAGTCTATACCTCAtctgcaaccaatcagcta
ttcatgcaccattgcaatattttctgacatttcatcactgacccaacagc
tgattgtaAGTAATGTACACCTCCTTTTTCTTCAGAGTCAGAGACAATCA
TCCATCGAAAGTTCTTCTTCAAGTCGTCAATGGTTCGCATGGTTATTGAT
TGAAAGTTGTGGAAAATTCATGATAATCATTACGTCATAATTTCAAATGT
GGTGGCTAATGTGTGGcaatattttaaataattttggcTGTTTCATGATT
ATCATGAATACATGTATACAATTATAGACTGGAGTCATTTATAATACTTA
TAATTATATAATAACATCCATAAAGTTTCCTTAccaaatcaactttttct
taaaatttggtCTTCTAACATAATAGACTATTTACATTGTTTTAATCCAT
AGTTTCTACCCCAACTACATTTAGGGgaggtcttgggttttgatgaacca
aaaacaa

Coding sequence (CDS) from alignment at sc0000168_pilon:31443..37499+

>MSTRG.17070.1.p1 ID=MSTRG.17070.1.p1|Name=MSTRG.17070.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1968bp|location=Sequence derived from alignment at sc0000168_pilon:31443..37499+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTGAAGAAACACAATAACAAGTTGAAGATCACCAACGATACAGGGCA
CATTTTGAAATACCACGGCGAATGGTTTGATTCAGGACGCGTGGCTGATG
GATTTCGATGGCCTGAACTTATCCAAGATGGCGGAAAAGAAACCATACTC
TGCTATGAAAGGGATTGGGCGATGGCTGGATGTTCAGGGTACGTTCAATA
TCAAATCAGTGGTCAAGTTTTAACGATCGGCTTTTCAAATCCTTCTGCTG
GAAAGAATAAAGTTGGAGTCGGGTTGAATGGTAAAAAGATATGGGATGAG
ATGGGATGCAACGATTATTCACCACACGTCACGACTTTACAGATGGAAAC
GTTCGTATTGAAATGTCATTATTCATGTACTGGAGGTGCTACCAACAACA
TTGACATCGTACTGGAAAATATAGAAAGAGTCAGAGACAATCATCCATCG
AAAGTTCTTCTTCAAGTCGTCAATGGTTCGCATGGTTATTGAATGGTGAA
GAAACACAATAACAAGTTGAAGATCACCAACGATACAGGGCACATTTTGA
AATACCACGGCGAATGGTTTGATTCAGGACGCGTGGCTGATGGATTTCGA
TGGCCTGAACTTATCCAAGATGGCGGAAAAGAAACCATACTCTGCTATGA
AAGGGATTGGGCGATGGCTGGATGTTCAGGGTACGTTCAATATCAAATCA
GTGGTCAAGTTTTAACGATCGGCTTTTCAAATCCTTCTGCTGGAAAGAAT
AAAGTTGGAGTCGGGTTGAATGGTAAAAAGATATGGGATGAGATGGGATG
CAACGATTATTCACCACACGTCACGACTTTACAGATGGAAACGTTCGTAT
TGAAATGTCATTATTCATGTACTGGAGGTGCTACCAACAACATTGACATC
GTACTGGAAAATATAGAAAGAGTCAGAGACAATCATCCATCGAAAGTTCT
TCTTCAAGTCGTCAATGGTTCGCATGGTTATTGAATGGTGAAGAAACACA
ATAACAAGTTGAAGATCACCAACGATACAGGGCACATTTTGAAATACCAC
GGCGAATGGTTTGATTCAGGACGCGTGGCTGATGGATTTCGATGGCCTGA
ACTTATCCAAGATGGCGGAAAAGAAACCATACTCTGCTATGAAAGGGATT
GGGCGATGGCTGGATGTTCAGGGTACGTTCAATATCAAATCAGTGGTCAA
GTTTTAACGATCGGCTTTTCAAATCCTTCTGCTGGAAAGAATAAAGTTGG
AGTCGGGTTGAATGGTAAAAAGATATGGGATGAGATGGGATGCAACGATT
ATTCACCACACGTCACGACTTTACAGATGGAAACGTTCGTATTGAAATGT
CATTATTCATGTACTGGAGGTGCTACCAACAACATTGACATCGTACTGGA
AAATATAGAAAGAGTCAGAGACAATCATCCATCGAAAGTTCTTCTTCAAG
TCGTCAATGGTTCGCATGGTTATTGAATGGTGAAGAAACACAATAACAAG
TTGAAGATCACCAACGATACAGGGCACATTTTGAAATACCACGGCGAATG
GTTTGATTCAGGACGCGTGGCTGATGGATTTCGATGGCCTGAACTTATCC
AAGATGGCGGAAAAGAAACCATACTCTGCTATGAAAGGGATTGGGCGATG
GCTGGATGTTCAGGGTACGTTCAATATCAAATCAGTGGTCAAGTTTTAAC
GATCGGCTTTTCAAATCCTTCTGCTGGAAAGAATAAAGTTGGAGTCGGGT
TGAATGGTAAAAAGATATGGGATGAGATGGGATGCAACGATTATTCACCA
CACGTCACGACTTTACAGATGGAAACGTTCGTATTGAAATGTCATTATTC
ATGTACTGGAGGTGCTACCAACAACATTGACATCGTACTGGAAAATATAG
AAAGAGTCAGAGACAATCATCCATCGAAAGTTCTTCTTCAAGTCGTCAAT
GGTTCGCATGGTTATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.17070MSTRG.17070Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17070.1.p1MSTRG.17070.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.17070.1.p1.exon1MSTRG.17070.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17070.1.p1.exon2MSTRG.17070.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17070.1.p1.exon3MSTRG.17070.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17070.1.p1.exon4MSTRG.17070.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.17070.1.p1.exon5MSTRG.17070.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168_pilongenomesc0000168_pilon:31443..37499 +