MSTRG.168.1.p3 (mRNA) -

Overview
NameMSTRG.168.1.p3
Unique NameMSTRG.168.1.p3
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000001_pilon:3257816..3263181+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.168.1.p3 ID=MSTRG.168.1.p3|Name=MSTRG.168.1.p3|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5366bp|location=Sequence derived from alignment at sc0000001_pilon:3257816..3263181+ (Clytia hemisphaerica_ch_hm2_pilon)
agcataattaaaaaaaatgaatataaagAATGAATAACAAAGAAGGCCAA
AGTGACAAAAATACAGGAAAGAACGAATGACGCCAATACGCTTTCCCGAA
AGTTGATTTGAGTCTCCTGAAAGTCAGTTCAAACACCAAAACATCTGCTT
TATAAGAAACATCAAATCATCAACAAAATCAGACAAATCAAACGCAGAAA
TACCGATCGAGTCCGTCACCATCACACACAAAGATCAAACCATCAAAAGC
CTGCGATATCTCAACATTTAAGTAATTATTATCCTAACCAAAACCAATTA
CCACACTCTGGTCAACAACAAATGGAGCCATTTCAACATTTAAATCGTAA
CACTCATTTCGATCGCCACGATTTCCCATCGTACCCAAGAGGAAACCCAC
ATTCTGAATTCCCATCTTACCTTGGCCCAAACCCTTATACAGAACAGCAG
TATTGCCAAGGACCAACACATTATTGGCAACCCCATTCTCACCGTGCGCA
CTTCCCACCGTATTTGGGACCAAGACATCAACCAAGCTATCAACCAAGGA
GACACTTCCAAAGCTTCAACCATCAATATCACAGCGACCGCAGATGGAAT
GAACAGCAACAATCTATTTACCATACCCATCACCCTACCCAATATCCGAA
CCATCTGTTAATGCAAGAGCCCGCGTGGAGACATCTTTGCCAAAGTGTTC
GTCCTAATACAAACCCTCGTCACCAAATGAACTTCCCTAACCTCAACGTT
CAAGCCTCACAACATTACAATCATCATCGAACCAACCAATATAACAAGAA
CCGATTTAATGAAACAAACATAAAACAATCACAAAGCAAAAGTCAGCCAA
CTCTAACACGGCAAACTTCTACAAAATCAACAGCGGAGTTGCATGATGAA
ACTAAGAACTCTAAAATCAAAACTAACGAGAAGTCTGTAAAAATTAACGC
GAAAACAACGACGATAGTCAAAACCAGTCTTGAAGCTCCAAATCCTACCT
CTGATATTCCTAATACCGCCCCTCGTGCTAAAAGTACCGCCCTCGAGGAT
GTCGATCCTTTATCTATGATCCTAATGAACAATTTCGTTCAGAAACATCC
GCCCACCAAAAAGAGTGATGAATTTTCCAAGTTCTTGACTTTGGGAGTTG
ACGAAGGTAATTTGAAATCAAACTCTACCAATAGTGCAAAAGTTCTTTCA
AAGGATGAGACGAAGAATAAATTGAACGGGAATATGATTAAAGAATCTGC
TCCTGTTGACGccattaaaactttttatgataGCTCTACAAGTGCAAGTG
ATTGGCCCGAAACACCAAGAAAGTCGAGCACTCCGCCAATCGCAAGGCTT
AAATCTAAAGCCGAACCAATCAAAAATGACGAATCCAAAagtcaatcaat
caaaaatgaCGAACCAAAAGCCAACCGATCGGAAAACTAGGATCCAAAGT
TTCGAAAATCAACAGCCAATCAAAACCGAGACGGTCACCAAAGAACAAAC
CTCCAATCGAGTGCATTAATCTTGTGCAATCGGAAGAAGAAACAAAGCAG
CGAGTGAATAGAGGAAATAAACAAGGGGAGGTCGATTTTTCTGTCGAATC
TAACGAAGGAACGATTGAACACAAAAACAAGGATAACGAGGTTGTAATCA
TTGAAGATATTCCGAGAACTATTGATAATGTTAATGGTCAGAAAGAGCGA
ACGAAAGAACTAGAAATTGAACAGAAGGAAGAAGCGAATGGCGAACGAAA
GATTGAGAACAAATCAAAACGGAGAAGAGAAGGAAAAGGTAAACTtagaa
atgaaagaatgagTGACCGTGATATAATGCGagaggaagaaaaaaaacga
aatcgAATGAAAGAGCGAAAATCAAAACGAGAGAACACACGCCAACGAGG
AGAAGATGAGGTGGAAAGATTCCGAGCTAGTGACAATGATAACaaacgaa
agaacgagaatcaaataaaacgaataaacgagttaaaatttgaacaaaag
aaagaatccaaagatgaacgaaaaagcgaatcaacgaaaaagaaacaaat
aacaaacgacgaagTCTCCAAAATGTTGGATAaattaaaatcgaaaaaga
aaagtagtGATGTCTTGAAGGAATATTTAAAGATTGGGAAAGGGAAGGAC
ATGACTAACAAAGAGAGAGGAGAATTGTTTAAGAACTTGTTGaaaaaaga
aacgaagaaaACAGATATGAACAATAATGTTGTTATAGTTGCCGAGAAGA
CAAAAGTTCGAACAAAATCGATTAAATTACTAAATCAGTCGAATCAAAAG
CCTGCAGAAACTACaatgaaggaaaatgaaatgtTACCGGTAGTTGTTGA
CGTTGAAATTACAAGATAATTACCGACAAATCGCCCTGATGTCGTATTGA
AATCCGATAAGGGTGTGAAATCATCAACTGAGTGTGCATTGAAACTGAAT
AAACTCGATCCTGAACACCTCACCAAGAGTGGGACCaatgaaaataacaa
tttaaaaagtgacacaaaaaatattgaatcgACATCTCCCTTATCAATGG
AATACAAATCCCAATTATCCACATCGCAAATGATAATTAACAATCTAGTT
AGAATTGATCGTAAATGTTATCAAAATCCTCCAGCAttgcaaaatcaaat
ttcttcaAATCATGATAGCAACAATAGCCAATGCTTCCCGAAAATCGTCA
GAAAGTCGCCAAAGCTGTCGAAATCTGAACTCCTGAGAACTATTGATTCC
AAAACTCCTTTAATGTCTACATCAGGTCTACGAGATGAAATGATACGACC
CATGAAACGAAAATGTTTGCTACAAGATCAAGTTTTTAATCAGAAAACTG
GAGTTGACCATAACTGCTCACAATCAAAGCGAcataaaaatgagaataat
tTTACAGAGATTGTTGAAAGAGATGTAATTACTACGAAGAAAACAGTAAA
TGGGCCAGAAAATGCTACGGCGATTCTCGAAAGAGGTGTGAAGTTTACTA
CGGAGAGTTTAAAACATAATATCAAGAAACAGGAAAACATTAGAGATAAA
GACTCTAATGCTGAAATGAATCAAAACTACATGGTTGCGAATGAAACGAT
TCAGAGCAACGACCAACGACTTTTCTCCTCGAGGAAAGACAAACAAAGGA
AGCGAAGATCAATCCACCAACGTCAGAAGTcggaaaacaaagaaaatgtg
gCACCGAAAATCCATCTCGCTAAACGTACACCGATAAAAAGACGGTCGAG
TACCCGCTACCCGGATTCCGACAACCATCTTGATTcgtcaaagaaaagaa
aatttgtcgaTCTTCATGATGAACCTcctcgaccaatcaaaatcaaCAGC
AAGACACGAAGAAAAAGTTCCAGTAAATCAACGTTGGAAAGAGAGCCATC
AACATTCGAGGTAATTAACTTTAACGATGGTTCCAATACCTCTATTGTCT
TACCTCTCATGATTTTCAACTTaaaattttgcccaaatttcGTCCACGGT
GGGGAAGATACTTTAGGcagtgaactgttatcagatagaataatatctca
ctttggctacttcatcatctattcagattccctttattaaaagtgattat
tggtcgtaaaaacagtttctcaaaatctgatgcgtggatagaaatctctt
tataagggtatgtttgcacggtattttttctcagttacgaaatttttagt
tttggaaaacgattgatatttacaaatctattttagcttacaatctggaa
ttttaggagctgaaatttagtgattccatcgatttaaactcttaaaatta
aaaaataaatgttaGTCTATATACGGAAAGAAtaactaatttaggtgaaa
acttgacacccaaatttcttttcttagaagtgcgttttcaaatagttttc
aacactgGTCAATCTATAAAATGagttgatttcaaatatgtaattcttat
ttgcattgaggggaccgaagtgcccgaaatttcaagttgaaaataatcaa
attatgtgcataatttttgagaattcaaaagagtccaatcaagcatgaga
aaatatgcaattaaaatacgataagaacaaagagatgacattatcattgc
acacgtgcaatttaattcccattgcaactaagggaccccttacagacacg
cttcattttgaggaaaaaagcatgaattcattctatctgataataattct
atgctttaggcgtacaaactttcgcgagcagaaactttcgccattttcgc
gaattttggcctcgcgaaagtttgtacgcctaaagtaccctacaatttca
ggaaaattgactttgattttatctccatgtgaaattcaatggaaaaagtC
GCGCTCactagaatttttatccccattgggattggATATAAATTTACATT
GTTGAATGcgagggctgtgagacaggggtatacaatatacactgtttttt
tttcaagtctaaAAACCTATACCATTTCTATAATGAAAGCTGATGCCATG
CTTTGGTTTTGTGTCaatagtttttttgaatttttttactttcaggAATT
TGTTCAAGATGTTCATGATATTTCTACTGTTACCAAAATGTTCATCCGGT
AGGTCCACTGATCGCTAACTACTTTTCTGGATCACGCTTCTCATGTTTag
gaagtgtgtccagtttaAGAGTCAACTAATCAAgcctcattttcaaaaag
acaccttatgtggattaattttggtgggGATTGAATTGGGcgaattaaat
ccccgccaaaatttcaaaaactgacCATCCAACAAATTAAAACTCTgcca
attttacaaaaataatattatgtAAAAGGTCACAATTTTTCAGTATATTT
TATAGTAATTTCTAGAAATTTCCCTTTTAGTGCCTCAAACTTTCCGATTC
GCGGaattaaatccccaccaaaTTTTACTAAATCAATCTATCGCTAAATT
GAATCCCCggcaaaaatcgtattttggcctGGCGATTGGCGAAAATACTA
TTTtgggcggggatttaatttggcgatatccacgccaaaattaatccact
cgAGGTATATGGCGCATTTCGCATGCACGTGcattttgattgtatttttc
atcactttcatttttagaaaagcACCAGAATTTGAGCAAGAATTAAAAAC
CATCTGCATGGCTGTACTAATCGATTTCTCAGGACCAATCAAAAAGCTTC
GTTCTTTATAATATTTTCCCAGTTTTAATGTTTAATGTTGATTACTGCTT
TTGTTATTTTATCTTTTATGCGGCATTATTCTGATTTATagacttactct
cgggtacctaataagcgcaTACTTAccccactaattaatttttcacatCC
ACACATGACATCCCCc

Coding sequence (CDS) from alignment at sc0000001_pilon:3257816..3263181+

>MSTRG.168.1.p3 ID=MSTRG.168.1.p3|Name=MSTRG.168.1.p3|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=561bp|location=Sequence derived from alignment at sc0000001_pilon:3257816..3263181+ (Clytia hemisphaerica_ch_hm2_pilon)
atgagTGACCGTGATATAATGCGagaggaagaaaaaaaacgaaatcgAAT
GAAAGAGCGAAAATCAAAACGAGAGAACACACGCCAACGAGGAGAAGATG
AGGTGGAAAGATTCCGAGCTAGTGACAATGATAACaaacgaaagaacgag
aatcaaataaaacgaataaacgagttaaaatttgaacaaaagaaagaatc
caaagatgaacgaaaaagcgaatcaacgaaaaagaaacaaataacaaacg
acgaagTCTCCAAAATGTTGGATAaattaaaatcgaaaaagaaaagtagt
GATGTCTTGAAGGAATATTTAAAGATTGGGAAAGGGAAGGACATGACTAA
CAAAGAGAGAGGAGAATTGTTTAAGAACTTGTTGaaaaaagaaacgaaga
aaACAGATATGAACAATAATGTTGTTATAGTTGCCGAGAAGACAAAAGTT
CGAACAAAATCGATTAAATTACTAAATCAGTCGAATCAAAAGCCTGCAGA
AACTACaatgaaggaaaatgaaatgtTACCGGTAGTTGTTGACGTTGAAA
TTACAAGATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.168MSTRG.168Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.168.1.p3MSTRG.168.1.p3-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.168.1.p3.exon1MSTRG.168.1.p3.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.168.1.p3.exon2MSTRG.168.1.p3.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.168.1.p3.exon3MSTRG.168.1.p3.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001_pilongenomesc0000001_pilon:3257816..3263181 +