MSTRG.16626.1.p1 (mRNA) -

Overview
NameMSTRG.16626.1.p1
Unique NameMSTRG.16626.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000159_pilon:152315..156499+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.16626.1.p1 ID=MSTRG.16626.1.p1|Name=MSTRG.16626.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4185bp|location=Sequence derived from alignment at sc0000159_pilon:152315..156499+ (Clytia hemisphaerica_ch_hm2_pilon)
ATCAATTAATATTACTTACATAGGCTATTATTGTTCTAGGTATCTCAAAA
TATTGCAGTAATTACACTAGATTTGCAAACCTAAAAAACATTTCACTATT
CAACATTTTTCACTAGAAAATGTCCGAACAAAAATTGTCccaattgaaaa
tcaaaagtgTAGAAATAAGAAAGTTCAATCCTAAAACAGATGCAAAAAGA
TTAACTGAAATATGGGTTAATGGTTTAGACCAATCAGTAGACTCTCAATG
GTGGTGGAACCGTGCTTATTGGAGAGAATTCTTCTCTCAGTATGCAAAAG
ATGCAACTGCAGTTGATGGAGATATGGGCCCAGAAGGTACTAATCTTGAA
AAATCGTGGTGTTTTGATGAAGAGAATGTACAAATGTTGGTTGCTGAGCT
CATATTTCAAGATCCAAAGATGGCACATCTTCTAGTTGGAAGCATAGGAA
TCAAGAGAGGGTATGAGCACAGCAAAGATGGAACAATTTTCACAATTTGG
AGAATGTCAGTTGACATAAACTACAGAGGATATTCTATAGGTGGAAAACT
GTTATTAGCAggagaaaaatgggcaaaacAAAAAGGAGGCACGAAAATGA
GCGCAGAATCAATGAATCCGATAgctattaaattttatttgaaacatGGT
TATGAATGGTCGGAGTGGTCTTGGTGGGATTGGATTGTTttcaaatgcat
tggatcaattGGGatcaaatttcatgaaaaaacttTAGCGTGAATAGAAA
CCTAGAAACTGGAAATCCCCACATTGCAAaactttgacaaattttttgaa
cTCTAGAAATAAAGCACTTTATTTCAAAACCGTTGTCATGTTAACAAGTT
TACCTTGAAACTTTATGACACCAAGAACAACTGGTGCTTATCAATTTCTA
AAATATGAAACTGCACTACTTTCCAACCATTACATCCAATCTCGTTTATT
ATTCATTTATTAATTCGTTTGAGTGTTaatctcaggtgcctaataaataA
TATGCTGGTGGGTTtagaaataatttcaaaacatgaTTAACGAGAGGAAC
CTATTTCCTTGAGATCAGTAAAAGTGTTCTCATGAATACCCCCAAAATAA
GATAAATAGACTTAATTCAGGTaatttggagcaaaataagggattCTTCT
GTCAActgctaaaaattattttcaaaaattaacaaaaaaagggCGCTGTT
CATTAGGCAACTGATATTAGATTAATCAATTCttttgggtagaatatttt
tatatatagccttttttagttcattttatcaacagttttttgataggtca
tttcatttttttttaaggaCGTGTATAAAATGTTGTAGTTAAAATGCTGA
CATTTTGTGATGTGCAATTTGaatcagtaaaaaataaaataagtgaAAAC
AACATTCTATAAATACATAACAACATTAGAGTTTTTGTTTCAGGGGCAAC
CGTAACAAACCTTCTCTTTAagaagatgttcttttaaaaaagtcggtttt
tacatttctctatcatgtggTCGGTTCAGTTGCTCATGTGGtcagttcag
ttgttcacgtgttaggaaCAAAAAATCTCTGTATataaaagattaaatgt
tttgaaatatttttcattgttgCGAATATAAAAAGATGATAAGTTTTTGA
TTGTTCATGAGTTTCACTACTTGAATCAATTAATTAATTGGGGAGTtcct
aaacatcgaccagaaatgacgaccacgaccagcgaccacgaccggcgacc
acgaccggcgaccagataattTTTAGTTATCGAGTTTTTCTCTTGTCGAT
GTTTAGAGACTCCCAATTAATTATCTTAACTTTAGAAAACGTTATTATAA
TGGAGGGTTACAATTATAAAGAAATACTGTacaaatataattttctttga
atgaacTTCAAAGTCATGAGGTGGTGCATGCAGGTTTAATTGTTTCTGAT
TATTTAATCAAAATCAGTCATCAGCAACGCAAGATGACAAAGTTGATTTT
TAATAATGGATTCTTTGCAACACAGTCAATCAAAAAACAATCTATTTTTG
AATTATGCATTTAAAAACGTGAGTTATTGCATGCACAATTCCTTTAATCT
ATCTTCCATTTAAATGATCTgcttattttgcaaaataactttagcagttt
tttttttcataaggaaGATATCAATTAATATTGCTTACATAGACAATATT
GTTTTAGGTATCTCAAAATATTGCAGTAATTACACTAGATTTGTAAACAT
ATAAAAAGACTTCACAAACCTCAATTCAATCTGAGCAacattttcactaa
aaaatggCAGAGCAAAAATTGTCccaattgaaaatcaaaagtgTAGAAAT
AAGGAAGTTCAATCCTAAAACAGATGCAAAAAGATTAACTGAAATATGGG
TTGATGGTTTGAGGCAAACAGTCGACTCTCAATGGTGGTGGAAACGTGTT
TATTGGAGAGAACTCTTCTCTCAGTATGCAAAAGATGCAACTGCAGTTGA
TGGAGATATGGGCCCAGAAGGTACTAATCTTGAAAAATCATGGTGTTTCG
ATGAAGAGAATGTACAAATGTTGGTTGCTGAGCTCATATTTCAAGATCCA
AAGTTGGCACATCTTCTAGTTGGAAGCATAGGAATCAAGAGAGGGTATGA
GCACAGCAAAGATGGAACAATTTTCACAATTTGGAAAATGTCAGTTGACA
TAAACTACAGAGGATATTCTATAGGTGGAAAACTGTTATTAGCAggagaa
aaatgggcaaaacAAAAAGGAGGCACGAAAATAACAGCAGCATCGATGAA
TCCGATAGCTagtaaattttatttaaaacatGGTTATGAATGGTCCGAGT
GGTCTTGGTGGGATTGGATTGTTTTCAAATACATTGGATCAATGAATGGG
AAATTGCATGAAAAAACTTTAGGGTAAAATTAGCAACCTAGAAACTGGAA
ATCCCCCCATTGCAAAACTCTGACAAATTTTTAGAACTCTAGAAATAAAA
CTCTTGTTTATAACCTAGACTATTGAAGCTTTCTGATCATGTAAAAAATA
TTAGTAATGgtgatattttctttgaatttggtGATGTGGGCATCAATAGA
TGTACCCTGTACATGACATCTTCATTTTAATTTGCCTCTTAAAACCCTTT
GTGCATCTTGGGGTCTCCCCccaagttttcaaaaacttttctgatCTTTA
TTCAACCTTcttaaaatttgacattttttggtgaaaatttcgacatcatt
gatgacgtcattctaacatatttttggtcaaaattctttcaTCTGCTGGT
ATCCTGTATTCTAATGACTTGTCAACAATTGCCCcttttgcctaaataac
ccctggGTTACTGTATCCTGGGACTGGAAATGCTGATGGCTTGAAATTTA
AAGTTAAGTTTTTAAAAAGTGTTGTtgcgaaaatctattttttctaGCCA
CACGTTAAATTAAATTCCCCCTAAAATAAAGTTTACTTTTAACATACAAA
ATGTTTAACTTGATAATTTAGTCTTACTGGACAGGTCTTCAGCAATGTCA
TGAAAGATAAAATAACCTATAGTTCAATATTCCTTGGCTGCATCCATAGT
CAAACGCAACGCACTGGACTCAACTTTTGTGGCTTCTAATTATTTAATAT
AGGCACAATTGTAGCaacaaaaagacaatgaaatgaATGAATGTTTAGTC
ATGTGGAAAATTCATCTTTTGTActatattttgataatattggAAAATTC
AACCTTTTGAGTGGAATaaatgaatttgatatttttcttctaattttttc
ttacttttttgaaCTCCATCAATTTCAGATGACTAAAGGTTGTGGTCCAC
TTAGCCTTTTTTGGTCGCCGTTCAATGCGCACGGctcgaaaaaaattggg
ggcCACTTATCTTTCAACCTATAGTAGTTTTTTAGATATTCCATTTCAaa
gttccattttttgaagatttctgtaCAAAAACATCCCGCCATCTTGTAAC
ATCTCCACAGCACTGAAATGGAAagtgtttcataaaaaaatgtacGCAGA
AAATTTGGGGCGAGAGTGTTTTTCCATATCAAGAGCTGTAGACGTGGGTC
ACTTTACCTTTAACTTTCCCTTAGCACTTTCCACCCGAAACTATTTGGTT
AgagattaaaagaaaaaaattacagtgcACATTTT

Coding sequence (CDS) from alignment at sc0000159_pilon:152315..156499+

>MSTRG.16626.1.p1 ID=MSTRG.16626.1.p1|Name=MSTRG.16626.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1254bp|location=Sequence derived from alignment at sc0000159_pilon:152315..156499+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCCGAACAAAAATTGTCccaattgaaaatcaaaagtgTAGAAATAAG
AAAGTTCAATCCTAAAACAGATGCAAAAAGATTAACTGAAATATGGGTTA
ATGGTTTAGACCAATCAGTAGACTCTCAATGGTGGTGGAACCGTGCTTAT
TGGAGAGAATTCTTCTCTCAGTATGCAAAAGATGCAACTGCAGTTGATGG
AGATATGGGCCCAGAAGGTACTAATCTTGAAAAATCGTGGTGTTTTGATG
AAGAGAATGTACAAATGTTGGTTGCTGAGCTCATATTTCAAGATCCAAAG
ATGGCACATCTTCTAGTTGGAAGCATAGGAATCAAGAGAGGAGGGTATGA
GCACAGCAAAGATGGAACAATTTTCACAATTTGGAAAATGTCAGTTGACA
TAAACTACAGAGGATATTCTATAGGTGGAAAACTGTTATTAGCAggagaa
aaatgggcaaaacAAAAAGGAGGCACGAAAATAACAGCAGCATCGATGAA
TCCGATAGCTagtaaattttatttaaaacatGGTTATGAATGGTCCGAGT
GGTCTTGGTGGGATTGGATTGTTTTCAAATACATTGGATCAATGAATGGG
AAATTGCATGAAAAAACTTTAGGGTAAATGTCCGAACAAAAATTGTCcca
attgaaaatcaaaagtgTAGAAATAAGAAAGTTCAATCCTAAAACAGATG
CAAAAAGATTAACTGAAATATGGGTTAATGGTTTAGACCAATCAGTAGAC
TCTCAATGGTGGTGGAACCGTGCTTATTGGAGAGAATTCTTCTCTCAGTA
TGCAAAAGATGCAACTGCAGTTGATGGAGATATGGGCCCAGAAGGTACTA
ATCTTGAAAAATCGTGGTGTTTTGATGAAGAGAATGTACAAATGTTGGTT
GCTGAGCTCATATTTCAAGATCCAAAGATGGCACATCTTCTAGTTGGAAG
CATAGGAATCAAGAGAGGAGGGTATGAGCACAGCAAAGATGGAACAATTT
TCACAATTTGGAAAATGTCAGTTGACATAAACTACAGAGGATATTCTATA
GGTGGAAAACTGTTATTAGCAggagaaaaatgggcaaaacAAAAAGGAGG
CACGAAAATAACAGCAGCATCGATGAATCCGATAGCTagtaaattttatt
taaaacatGGTTATGAATGGTCCGAGTGGTCTTGGTGGGATTGGATTGTT
TTCAAATACATTGGATCAATGAATGGGAAATTGCATGAAAAAACTTTAGG
GTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.16626MSTRG.16626Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.16626.1.p1.exon1MSTRG.16626.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.16626.1.p1.exon2MSTRG.16626.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.16626.1.p1MSTRG.16626.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000159_pilongenomesc0000159_pilon:152315..156499 +