MSTRG.16088.1.p1 (mRNA) -

Overview
NameMSTRG.16088.1.p1
Unique NameMSTRG.16088.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000148_pilon:796165..798518-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.16088.1.p1 ID=MSTRG.16088.1.p1|Name=MSTRG.16088.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2354bp|location=Sequence derived from alignment at sc0000148_pilon:796165..798518- (Clytia hemisphaerica_ch_hm2_pilon)
TTCAGAGCTGTCTTACAAATCCATAAAAATCAATTCGTCAGAGCACAAAG
TGTAAGTCTTGGGGATTAGTTTTGTGGCCCTTTAGTCAAAGTGGTAAGTA
GACTCATTGGGCTATGCCTACTAATCTTTTACGCCCTTTCTTTTAGGCAG
TCATTTTTGGAGTGTCAAATTCCCTCCGCGTTTCTAGGCCAATTTTAAAG
CATCCCTTAGATTAGCATCGAAATATCTCTGGATTTGTTTTTGGTTTGCC
ATAACCGCTCTCAGCCCTATAATTTTAGCGCCCTAGCATTTTCAGTACTG
TATACCTACTAGTATGAGTCTGCTGGAGGGGGTTGTTCATAAGTTTTCAT
CCTATTCCATCTTATCATTCTTCTTTCAGTGTATCGATAATGCTCGAGAC
ATGTTGGATACTGAATTGACGGCTATGGTCGGAGAATCCTACAACAGAGC
TTACAATGTGAGTACGAAACATAAGTAATTGCAGTTGGTCATTCTACCCC
TTCCATTGTTATTTCTTTATCTTGTTTTATGAAGACAGTTTTCAATACCC
AAATGACACTATACATTAAATATAACGACATTTTGGCGTTTATGTAATGT
TAGATTTCTATTGAAATAACGTTTATTGTGAAGTGGTGAAGTTGTTATCA
GCATACAAGAGGAAGGACTTAAATATCTCTCATCATGTGTGCCGGCTTGG
AAGTCAAATTTCCCCTCTTTTTCATTTAACCTGACTTTCATAGGCTATGG
TGAACGTACAAATGTTGTCAGAACTCGAAGAAGTTATTCAATACAAGCTG
GTTTCTGAGCGCCGCAAAGCCATCAAATCGGCCTGGTGGAACCGGTTACA
AGGTTGTCAAGCCAACGTGGAGGAGTGGCACCGTATCCTGCAAGTGCACT
CGCTGGTCTTGACTCCACAAGAAGACATGAAAACTTGGCTCAAATATGCA
AGCTTGTGCAGAAAGTCTGGCCAATTGGTAAGGCTGCGATATCCATTTGC
AAGAAATTTTACACTTATGAAGCCGCTCCTAGCCGCTCCTAGCCATTTAT
CATCTCTTAATCTTTCGGAAATTGCGAACCTCTTAAAGACACCACAAACT
TTACTTAACACGTTCACGAATTTTCTCCACGAAGTCTTTAGGGGACTCTT
TACATTAAAATTCTGATAATATTTTCAACCCATTTTTTTCAGGGTTTATC
TCAACAAACCCTTGTGACATTGCTGGAAGCGGATCCGTATTTGAACCAAG
ACAAACCCATCCCGTCGACGTACCCTATGGTCACTTTCGCTTTTATGAAG
CACATGTGGAAATCTGGACAACGTGTAAGTTTGATCTTAGAAACATTCCT
TCTGGGAAGTTAAAAATGGAAGATTTTGGGTAAAAACCGAAAAAAAATAT
TTTTATTTTTCGTTTCAAGACATTACTTTTAATGTTATCTTTTCAGTGCT
TGAAATTGTGCGAACTGTAAATTTTTAGAACATATTTGTTGTTCCTTTTT
CTACAGCAAGAGGCTTTCAAACACCTGCAATACTTTGTTCGAACCACTCT
CCTTCCACAAGTGTTACCACTTGGTGATCTTGATGATGAATCTGAAAAGA
AGAGAAACGAAACCATCAGCCTTCTTGCTAAGTACGACATTCCTCATTTT
TAAGTTTCTAAGACCTAGAGACTCTACAGCCTATTTCTTATGTAGTGGCT
TTTAGTTTTTAGACTATATAAGGCGAAAGTAACGGAAACCGGCCGGATGA
AAAAAAAATTCTGACACGGCCGCAGACTATGAATTCATCAATACGGTTCA
TCATAAAGAAAATCAAGTTGACCGTTCAAGCTATCAAACGTCGTTTGGTT
AGATATTCCCGCTTTGTTCGTTAGTAGTTGATACATTAGTATTCAGTGCT
TACTTCGTACTGTTTGTACATAAAAGTTCTCCTTAAGGTTCTATTTCAAT
GATCTTAAGTTACCAAAAATAGCATGAGAGCTTTTTTCCTTCACCCGCAT
GCCGGAAATACTTTTTTTATGTTCGCCTAAAAATACATACATGTTTTTTT
TAGTAAGCAAGTGTCTACCCCTATACCAGGATCGCATTATTCTCACAGAA
AAAAAACATGTCCATCAAGATCTCTCAACGAAAATCTCTTTTTGTCAGTT
CATGGAAAAGCCCTAACCGCACTAACCGTTGATCAATATTTTCAAAATAA
TTCATGCTTTTATTTTAATTAAGATGTCACATGAAACTTGGCGAATGGAT
GACAATAACAGAAGGGGTCAAAGGGGTCAATTCGAATACCATCCCACATA
TATTGCAATATCATGCCACCGCAACCAAATACGCTGACAAAAGTTACAAG
GTAC

Coding sequence (CDS) from alignment at sc0000148_pilon:796165..798518-

>MSTRG.16088.1.p1 ID=MSTRG.16088.1.p1|Name=MSTRG.16088.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4500bp|location=Sequence derived from alignment at sc0000148_pilon:796165..798518- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCACATGAAACTTGGCGAATGGATGACAATAACAGAAGGGGTCAAAG
GGGTCAATTCGAATACCATCCCACATATATTGCAATATCATGCCACCGCA
ACCAAATACGCTGACAAAAGTTACAAGGTACAAGAGGCTTTCAAACACCT
GCAATACTTTGTTCGAACCACTCTCCTTCCACAAGTGTTACCACTTGGTG
ATCTTGATGATGAATCTGAAAAGAAGAGAAACGAAACCATCAGCCTTCTT
GCTAAGGTTTATCTCAACAAACCCTTGTGACATTGCTGGAAGCGGATCCG
TATTTGAACCAAGACAAACCCATCCCGTCGACGTACCCTATGGTCACTTT
CGCTTTTATGAAGCACATGTGGAAATCTGGACAACGTGCTATGGTGAACG
TACAAATGTTGTCAGAACTCGAAGAAGTTATTCAATACAAGCTGGTTTCT
GAGCGCCGCAAAGCCATCAAATCGGCCTGGTGGAACCGGTTACAAGGTTG
TCAAGCCAACGTGGAGGAGTGGCACCGTATCCTGCAAGTGCACTCGCTGG
TCTTGACTCCACAAGAAGACATGAAAACTTGGCTCAAATATGCAAGCTTG
TGCAGAAAGTCTGGCCAATTGTGTATCGATAATGCTCGAGACATGTTGGA
TACTGAATTGACGGCTATGGTCGGAGAATCCTACAACAGAGCTTACAATT
TCAGAGCTGTCTTACAAATCCATAAAAATCAATTCGTCAGAGCACAAAGT
ATGTCACATGAAACTTGGCGAATGGATGACAATAACAGAAGGGGTCAAAG
GGGTCAATTCGAATACCATCCCACATATATTGCAATATCATGCCACCGCA
ACCAAATACGCTGACAAAAGTTACAAGGTACAAGAGGCTTTCAAACACCT
GCAATACTTTGTTCGAACCACTCTCCTTCCACAAGTGTTACCACTTGGTG
ATCTTGATGATGAATCTGAAAAGAAGAGAAACGAAACCATCAGCCTTCTT
GCTAAGGTTTATCTCAACAAACCCTTGTGACATTGCTGGAAGCGGATCCG
TATTTGAACCAAGACAAACCCATCCCGTCGACGTACCCTATGGTCACTTT
CGCTTTTATGAAGCACATGTGGAAATCTGGACAACGTGCTATGGTGAACG
TACAAATGTTGTCAGAACTCGAAGAAGTTATTCAATACAAGCTGGTTTCT
GAGCGCCGCAAAGCCATCAAATCGGCCTGGTGGAACCGGTTACAAGGTTG
TCAAGCCAACGTGGAGGAGTGGCACCGTATCCTGCAAGTGCACTCGCTGG
TCTTGACTCCACAAGAAGACATGAAAACTTGGCTCAAATATGCAAGCTTG
TGCAGAAAGTCTGGCCAATTGTGTATCGATAATGCTCGAGACATGTTGGA
TACTGAATTGACGGCTATGGTCGGAGAATCCTACAACAGAGCTTACAATT
TCAGAGCTGTCTTACAAATCCATAAAAATCAATTCGTCAGAGCACAAAGT
ATGTCACATGAAACTTGGCGAATGGATGACAATAACAGAAGGGGTCAAAG
GGGTCAATTCGAATACCATCCCACATATATTGCAATATCATGCCACCGCA
ACCAAATACGCTGACAAAAGTTACAAGGTACAAGAGGCTTTCAAACACCT
GCAATACTTTGTTCGAACCACTCTCCTTCCACAAGTGTTACCACTTGGTG
ATCTTGATGATGAATCTGAAAAGAAGAGAAACGAAACCATCAGCCTTCTT
GCTAAGGTTTATCTCAACAAACCCTTGTGACATTGCTGGAAGCGGATCCG
TATTTGAACCAAGACAAACCCATCCCGTCGACGTACCCTATGGTCACTTT
CGCTTTTATGAAGCACATGTGGAAATCTGGACAACGTGCTATGGTGAACG
TACAAATGTTGTCAGAACTCGAAGAAGTTATTCAATACAAGCTGGTTTCT
GAGCGCCGCAAAGCCATCAAATCGGCCTGGTGGAACCGGTTACAAGGTTG
TCAAGCCAACGTGGAGGAGTGGCACCGTATCCTGCAAGTGCACTCGCTGG
TCTTGACTCCACAAGAAGACATGAAAACTTGGCTCAAATATGCAAGCTTG
TGCAGAAAGTCTGGCCAATTGTGTATCGATAATGCTCGAGACATGTTGGA
TACTGAATTGACGGCTATGGTCGGAGAATCCTACAACAGAGCTTACAATT
TCAGAGCTGTCTTACAAATCCATAAAAATCAATTCGTCAGAGCACAAAGT
ATGTCACATGAAACTTGGCGAATGGATGACAATAACAGAAGGGGTCAAAG
GGGTCAATTCGAATACCATCCCACATATATTGCAATATCATGCCACCGCA
ACCAAATACGCTGACAAAAGTTACAAGGTACAAGAGGCTTTCAAACACCT
GCAATACTTTGTTCGAACCACTCTCCTTCCACAAGTGTTACCACTTGGTG
ATCTTGATGATGAATCTGAAAAGAAGAGAAACGAAACCATCAGCCTTCTT
GCTAAGGTTTATCTCAACAAACCCTTGTGACATTGCTGGAAGCGGATCCG
TATTTGAACCAAGACAAACCCATCCCGTCGACGTACCCTATGGTCACTTT
CGCTTTTATGAAGCACATGTGGAAATCTGGACAACGTGCTATGGTGAACG
TACAAATGTTGTCAGAACTCGAAGAAGTTATTCAATACAAGCTGGTTTCT
GAGCGCCGCAAAGCCATCAAATCGGCCTGGTGGAACCGGTTACAAGGTTG
TCAAGCCAACGTGGAGGAGTGGCACCGTATCCTGCAAGTGCACTCGCTGG
TCTTGACTCCACAAGAAGACATGAAAACTTGGCTCAAATATGCAAGCTTG
TGCAGAAAGTCTGGCCAATTGTGTATCGATAATGCTCGAGACATGTTGGA
TACTGAATTGACGGCTATGGTCGGAGAATCCTACAACAGAGCTTACAATT
TCAGAGCTGTCTTACAAATCCATAAAAATCAATTCGTCAGAGCACAAAGT
ATGTCACATGAAACTTGGCGAATGGATGACAATAACAGAAGGGGTCAAAG
GGGTCAATTCGAATACCATCCCACATATATTGCAATATCATGCCACCGCA
ACCAAATACGCTGACAAAAGTTACAAGGTACAAGAGGCTTTCAAACACCT
GCAATACTTTGTTCGAACCACTCTCCTTCCACAAGTGTTACCACTTGGTG
ATCTTGATGATGAATCTGAAAAGAAGAGAAACGAAACCATCAGCCTTCTT
GCTAAGGTTTATCTCAACAAACCCTTGTGACATTGCTGGAAGCGGATCCG
TATTTGAACCAAGACAAACCCATCCCGTCGACGTACCCTATGGTCACTTT
CGCTTTTATGAAGCACATGTGGAAATCTGGACAACGTGCTATGGTGAACG
TACAAATGTTGTCAGAACTCGAAGAAGTTATTCAATACAAGCTGGTTTCT
GAGCGCCGCAAAGCCATCAAATCGGCCTGGTGGAACCGGTTACAAGGTTG
TCAAGCCAACGTGGAGGAGTGGCACCGTATCCTGCAAGTGCACTCGCTGG
TCTTGACTCCACAAGAAGACATGAAAACTTGGCTCAAATATGCAAGCTTG
TGCAGAAAGTCTGGCCAATTGTGTATCGATAATGCTCGAGACATGTTGGA
TACTGAATTGACGGCTATGGTCGGAGAATCCTACAACAGAGCTTACAATT
TCAGAGCTGTCTTACAAATCCATAAAAATCAATTCGTCAGAGCACAAAGT
ATGTCACATGAAACTTGGCGAATGGATGACAATAACAGAAGGGGTCAAAG
GGGTCAATTCGAATACCATCCCACATATATTGCAATATCATGCCACCGCA
ACCAAATACGCTGACAAAAGTTACAAGGTACAAGAGGCTTTCAAACACCT
GCAATACTTTGTTCGAACCACTCTCCTTCCACAAGTGTTACCACTTGGTG
ATCTTGATGATGAATCTGAAAAGAAGAGAAACGAAACCATCAGCCTTCTT
GCTAAGGTTTATCTCAACAAACCCTTGTGACATTGCTGGAAGCGGATCCG
TATTTGAACCAAGACAAACCCATCCCGTCGACGTACCCTATGGTCACTTT
CGCTTTTATGAAGCACATGTGGAAATCTGGACAACGTGCTATGGTGAACG
TACAAATGTTGTCAGAACTCGAAGAAGTTATTCAATACAAGCTGGTTTCT
GAGCGCCGCAAAGCCATCAAATCGGCCTGGTGGAACCGGTTACAAGGTTG
TCAAGCCAACGTGGAGGAGTGGCACCGTATCCTGCAAGTGCACTCGCTGG
TCTTGACTCCACAAGAAGACATGAAAACTTGGCTCAAATATGCAAGCTTG
TGCAGAAAGTCTGGCCAATTGTGTATCGATAATGCTCGAGACATGTTGGA
TACTGAATTGACGGCTATGGTCGGAGAATCCTACAACAGAGCTTACAATT
TCAGAGCTGTCTTACAAATCCATAAAAATCAATTCGTCAGAGCACAAAGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.16088MSTRG.16088Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.16088.1.p1MSTRG.16088.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.16088.1.p1.exon6MSTRG.16088.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.16088.1.p1.exon5MSTRG.16088.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.16088.1.p1.exon4MSTRG.16088.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.16088.1.p1.exon3MSTRG.16088.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.16088.1.p1.exon2MSTRG.16088.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.16088.1.p1.exon1MSTRG.16088.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000148_pilongenomesc0000148_pilon:796165..798518 -