MSTRG.16.2.p2 (mRNA) -

Overview
NameMSTRG.16.2.p2
Unique NameMSTRG.16.2.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000001_pilon:186195..188736-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.16.2.p2 ID=MSTRG.16.2.p2|Name=MSTRG.16.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2542bp|location=Sequence derived from alignment at sc0000001_pilon:186195..188736- (Clytia hemisphaerica_ch_hm2_pilon)
CAAAGTATCCAGTATCATACTCACCAACAACGAAAAAATGTCAAGAAGAG
GCAATTTCATCATTTTCAAAGAAGATGAAATATATCGTCTCATTATTGCT
CTCATTGTATTATTCTTAAACCTGGCTGAAGTTTTTTTCATCATTTATAA
ATGGACTATCAAAAAGAAAAGAAAAACAATCTACGAGACATATTTGTTAA
GTTTATCATGTGCTGACGTAACGTTTTCATTGGCTAATATGATTTTTTCG
ACCATGATATTAGCAGATTCTGGGAATCTTATAATCGCGACTATTGGTTA
CGTCCTATCACTATATTTGTCAGTATCCCACATTTCAGCCATAACTGTGG
ATAGACTCATCGCCATAATATTCCCATTGACTCACAAACTGAAAGTTCGA
GTCAAACATGCTCGAATGGTAATCTTAACTTTATGGTTTGTTTGCATTGG
GATTGGAGTAGTGCTCTATTTTGAATACAGGAATAACACATTCGAAAAGT
ACACATTAATTAGTATCAAGTTTATCAAACTCATAATATACGTTTCAGAC
ATTATATTCATTGTTGCTTACATTATTCTATGTTACATTCTACTTCGACA
AGAGAACAAAGCATTGTCATCAACACGAGGTGCAAACACAGAGAAAAACA
TTTTGGTTCTTTGTCTTTTAACATCTCTAGCGTTCGTTTGCTGCACGTTA
CCAGTTGCTATTCACTTCACATTACATTCTCAATGGCCAGCCAGACTGAC
TTATTTACTGGTCGCGAATTCAGGACTGAATTCAATTTTGTATTTCTTTC
ATGGACGATTTGTTCATATTTATCGGAAACGTGTTAAAACACAACGGATG
CAGAAAACAGCATCATCGTCTACGGCTGAATAAATATTTTCAGTTTTGCC
AAATGAAATCTGCTGATAGTGATCAAGCTATCAAGTCAAAAAAAGGACTG
TTTGAGCCGAGCTGGCCCAAAACGTTCTATTGACGTCCATATAACGTTAC
GGACTTTGTAAATATCATATGAACGTTAAAACAACTTTTTGTGCCAGCTA
TGAGTCATTCAAGAAGAGTAATTTTTTGTCGATGGAAATCATGGTTAAGC
TCGTCTTCCTAAGTCAACATCTGGTCCCCTGATTAGGAACAATGTTAGTC
TCGATAGTTGAAAAAAAGAGAAGAGTGAAGAACGAAGGACGAAGGACGAG
TCATCAAAAGATATCATTTTTCTCTTCTAGTAAATGCTTACAGAAGAGCG
CTCCACCTTACACGTAATCTTATTATTTGCTATGTGCAATAATTATCATC
GAACTCGAAACCAAGAAATGTTATGTCTGTTTATTTCATTACCCTTTTCT
ATCGTGCAAATCATCATAATAGACTTGAACTAAAAACAGCATTGCTGTTG
TACACACGAAACTAGCAAGAAGAGAGTGGTAGAACGGTAGAAAACACGAT
ATATAAACAAGAGACCTCTTGATCATTCCAAGATCAAGATGAGAAGTCAT
GACTCAAAATAATTCAGAAGATGGCTGGCTTCTGCTCTTGTTATTACTGT
TGCTCTGCGAATTCAATGAAGGAAAAGTTATAAGACAACGAAACAGAAGC
ACAGTGGAAAACAATTTGCGCACTGGCAACGGCGTAGCAAAACAACAGAT
TCCTTCGAAGTCTCAAGATGTCAGTAGAAACACTATGTTTGCAGCAGAGA
AACGTCAAAATCAAATCAAAAGAGAAATATTGGAATCTTTACCGAAAATA
ACATCATCTATAAAACGAAATGAAAGAATACAGAAATTGCCATATCACAT
TCGCATTCGTCGAGATCTACAAAACGAACGGATTAGCCTGTATCATTACG
GTATGAAGCACTACAAGAAATACGAGGCTAGTGACACGATTTTTGTTTTC
AGTATTTTTGTTATTGTCGTTGGTTTCGTTTTCTTTTTGGTTTTGATATA
CTTATACTGGAATAAACTATACTGTTCTTTGTGGAGTTGACGACTTGAAA
AATTTTGGAGCCTCCATATTCTAAAGGTTTTATGCCTAATTTTTAAAATT
AGTATTTTGTGAGTAATTTAGTGTAACCTTTTTGAAGATATTACATGTTC
AAGCCCATTAAGGCTCAAAATGTTCTTAGAATGCTTTTTAATCTTTTGCC
TCGAAGTCTTTTGTTTTGACATAATCTTTTTTAAAGTACACATGGAACAC
GTCTTTTACACATCACTGTATCAGGGGCCCGGTGAAATCTGTACCGTTGG
ATAACCCGATGAGAAAATTAAAAAAAGTGACCTAGTTTCTGGCCCCTGGG
GTGAAATTGAGTAACCCACCCGGTCAAAAACTTGGAAATTCATTACAATG
CCTCACCCCGGTCAAAAATTGCATTGATTAGGGTTATTTAGATTAGATCT
ATTTAGCCTGGAGATCCATGCTATGATTTATTATTTTATATACTGCTGGT
GAAATGTATAGCATGGTGAGAGTTTGAATTTCACAAATCCTAGTGACGGT
TGAAAACACTGCTAATCAAATTTTGTTATTTTTTCACTGGTC

Coding sequence (CDS) from alignment at sc0000001_pilon:186195..188736-

>MSTRG.16.2.p2 ID=MSTRG.16.2.p2|Name=MSTRG.16.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=492bp|location=Sequence derived from alignment at sc0000001_pilon:186195..188736- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACTCAAAATAATTCAGAAGATGGCTGGCTTCTGCTCTTGTTATTACT
GTTGCTCTGCGAATTCAATGAAGGAAAAGTTATAAGACAACGAAACAGAA
GCACAGTGGAAAACAATTTGCGCACTGGCAACGGCGTAGCAAAACAACAG
ATTCCTTCGAAGTCTCAAGATGTCAGTAGAAACACTATGTTTGCAGCAGA
GAAACGTCAAAATCAAATCAAAAGAGAAATATTGGAATCTTTACCGAAAA
TAACATCATCTATAAAACGAAATGAAAGAATACAGAAATTGCCATATCAC
ATTCGCATTCGTCGAGATCTACAAAACGAACGGATTAGCCTGTATCATTA
CGGTATGAAGCACTACAAGAAATACGAGGCTAGTGACACGATTTTTGTTT
TCAGTATTTTTGTTATTGTCGTTGGTTTCGTTTTCTTTTTGGTTTTGATA
TACTTATACTGGAATAAACTATACTGTTCTTTGTGGAGTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.16MSTRG.16Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.16.2.p2MSTRG.16.2.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.16.2.p2.exon2MSTRG.16.2.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.16.2.p2.exon1MSTRG.16.2.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001_pilongenomesc0000001_pilon:186195..188736 -