MSTRG.15988.1.p1 (mRNA) -

Overview
NameMSTRG.15988.1.p1
Unique NameMSTRG.15988.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000147_pilon:70999..74324+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15988.1.p1 ID=MSTRG.15988.1.p1|Name=MSTRG.15988.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3326bp|location=Sequence derived from alignment at sc0000147_pilon:70999..74324+ (Clytia hemisphaerica_ch_hm2_pilon)
CAACGAGCAGATAGATGTTCATAATTTCTGCTTAGGCTAAAGGTGACAGA
GAGCTTTGTTTTTTAGCTGCGAGTAACTATTTTATCAATAGAGCTTACAC
GTTAATTGGaccaaagttttattttttgagaacCATCTGAGATTAACAAG
GAGTTTCCACGATTAAGCGATACGTTAAAGAATACTCAAGGAGAAATGAA
AATGTTATTGACAAATATGATGATGTTAGCGACAACAATTTTGGGTAAGT
CTAATTTCGCAGCCTCTAAAAACGATTATCGATTTTGTAGCCAGCCATGA
TTCCGTAGAAGAcgttacatcatgaatatcatcaaGTAGCTAGGAAGGGT
AGTCAAAGAGGATGTTATCGTCCATTTTAGAGGGTCTGTAACCGCGGGAA
AATATATAAGTGtagagtcagggcgtcagggcggtttacgggaaaaaagt
agCGGTAGAGTTTCGAAcaaacacctccgccactgcttactccgcccgaa
tttatcacgcctcctaaactatttcctttttagtgatcttgtgtagacgg
tAGGATCGTCTAGGGTAGTCATTGCACTTACAAGATACAACTTACTCTGT
GTTCAAAGCAGAACGGAGCACATTAGAAAGTCGAGAACAGTGATCGCTCA
ATGAGAACTTTCATTAGATTTTATAAAGATGTACatccttttctttcttt
acaACAGTGACGACAGCATGGAACCCTTGTCAAGATAATATTTGGCGTTG
CAACAACTATCACCAACCTAAAGGTCTGAGATACGTCAAACGTGCGTGTA
AAGGGTACGTCAAAATATATTGCCGTAATTTATGTTCATCAAAATGTTGG
CAACATATAGCAAAGAAAGAACCgacaactacaacaacaacgaccacaaC
GACTACCCCTACGACTTCCACGACAAGAGCTAGTAGGTTAATTTACTATA
TTATCAAACTGCATTTTTATTTTAGGTTAGGTTAACGAGATTTTACAGTA
AAAATAGTATCCATGATTGTATTCCACTGGAACTTAGTTGGAATGTGGTA
GgattcgaataaaagaagttGGAATTATGGATACACTGTATTAGCTTTAA
AATTATGCTAATTTTCAGTTCCTGAAGCTTATAAACGTTTTTATGTTCTG
CAAACCCAGAAGGCTTTAAAATACGTCCAGCTGACGCTCTGtaattcaaa
tttaaaaggAACTTTCACTGAATATGGGAGTGTACGAATAGTATGTATGA
TATGATATATATGCATCGTGTATGAGAGTGTCGATTTTTCGCTTCAACGA
TTAAAGACTAAGTTGTATTTCAATAGATTCCGGCTCAATTCAATTCCGGT
CGTGAACGTGACTGACTGAATGCTCTATTCTTCTTCTAGGAACGTGTTTC
GATAAAAGCAACGCCTGCAACCGATACACAAATTATTGTCGAACAAGTCT
TTGGATGAAGAGAAATTGTCAACAGACATGTGGCTTTTGCAATGGGGGaa
cgacaacgaccactccaacgacaacaacgaccattccaactacaacaacg
accattccaactacaacaacgacaacccctacgacaacaacaacaaccac
tccaacgacaacaacgaccacctccacaacaacaacgaccactcccacaa
caacaacgaccactcctacaacaacaacgaccaacccaacaacgacaaca
acgaccactcccatcacgacaacgaccaacTTATGTAGAATCAAATCAGA
CGATCGTTCGTGCGCAACCGTCCAACGAAaggaatgtttttcaaaaataa
ttggaGAAATAGTCCGATGTTTTTGTCCGATAAAATGTGCGACAAAAATA
GTGACAGCCACACAAACACCTGTTGTCACGACAACAAAACAACCAAAGAC
GACTAAAACAACGACCACCACTAAAGCCTCTACAACAAAACGTAAAATTG
TGAGACCCAAAACAACAAAGATAACTATCCCTAATGGAGGTAAGatctct
ttttcctttttttcattcTTGATAGGGTTGtttgagaaataaaaacaaac
aggCAACAGCATCAACAGGTTCTTTTAATCAGTTTCTGGTATCTATCACA
TTCACATTAAAACAGTTGAGGGATTATACACAGaagacacacaacgttgt
ttcaacattcatctaacgttaaatggacgttgtgaacgttagaaaaacgt
caaaacaTCGTTGTGTGTCTTCTGGGTATAATCCCTCAATTGTCATCAGA
AAagaattaatcaatttttcgaccgtagtcacgcggtcaggcgcgtgcca
ctttattatttgattatccccctaaactcgatccaatcctttttttacac
ctttttctattgtctataggtgagaaaaaaattcggacggttttagggtg
gtaaaacggacaaaaaaatgcccgcgcggcaattggcagctacggtcaaa
aaggtgtattgataaaaacttgatttaaaaCATTACCGACTTAtattaat
tttcatattttgtagTGTGTGGTGACAAGGCTTTCTACTGTATGGTTCCC
CGTCTATTCAACCCGGAAACGAATTGTATCGGACACACAGCCACTTGCAT
CCGGACGTGTGGTGTCTGTAATGGACCTACTAACGAGAAATGTGCAAATC
TCAAAAACCGCGCGTTAGATTGTAACCGCCGTAATTGCCAACATGGAAAT
CTAGAACAGAGACATAGGAATCGCGTTAATTGCTCTAAAACGTGCTGTGA
ACGTAATCAGTTAcactgaaataaataaaaagaatatgTTTGGTATCAGG
AAGGGAGATTGAACTTTTTCATCAAGGCATCAGCTTTTAGATAACAGGCA
AATGGGGAAGACGATGAAGCACGAAGGAGGAATGATCATACGAGTTAGAG
GGAGAGAGTTAGTCAATTTACAGAACAGAAAAAACAGTTTAAGATCTCAA
GATATCAAGAGGTCGGAACAACCATCCGAATTGCAGAAACCGTTGAGTGT
CACGTAGTCATAAacaaaattctgaattttcaaaatggtgggAATTCATA
GACCGTTGGCATATTTTACTTCCAGCTGAAGAGCTTGCTTGGCTGTATTG
AAAAATGACTTATTAAAAGGAGTTGAGGCTTTGCGAAAATTGAGCCTTAT
TTTCAGATGAAAtcgttcttataacaaaaacatgaaattttcaaattaca
agCAAattacttaatatggtatttatcttatagtatttattctttattta
tcatttgtcattattttttgtttcggaaatatcagattaattttaaacat
tataTTTAAATGATTGTATAAAAAAT

Coding sequence (CDS) from alignment at sc0000147_pilon:70999..74324+

>MSTRG.15988.1.p1 ID=MSTRG.15988.1.p1|Name=MSTRG.15988.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4512bp|location=Sequence derived from alignment at sc0000147_pilon:70999..74324+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAATGTTATTGACAAATATGATGATGTTAGCGACAACAATTTTGGT
GACGACAGCATGGAACCCTTGTCAAGATAATATTTGGCGTTGCAACAACT
ATCACCAACCTAAAGGTCTGAGATACGTCAAACGTGCGTGTAAAGGGTAC
GTCAAAATATATTGCCGTAATTTATGTTCATCAAAATGTTGGCAACATAT
AGCAAAGAAAGAACCgacaactacaacaacaacgaccacaaCGACTACCC
CTACGACTTCCACGACAAGAGCTAGAACGTGTTTCGATAAAAGCAACGCC
TGCAACCGATACACAAATTATTGTCGAACAAGTCTTTGGATGAAGAGAAA
TTGTCAACAGACATGTGGCTTTTGCAATGGGGGaacgacaacgaccactc
caacgacaacaacgaccattccaactacaacaacgaccattccaactaca
acaacgacaacccctacgacaacaacaacaaccactccaacgacaacaac
gaccacctccacaacaacaacgaccactcccacaacaacaacgaccactc
ctacaacaacaacgaccaacccaacaacgacaacaacgaccactcccatc
acgacaacgaccaacTTATGTAGAATCAAATCAGACGATCGTTCGTGCGC
AACCGTCCAACGAAaggaatgtttttcaaaaataattggaGAAATAGTCC
GATGTTTTTGTCCGATAAAATGTGCGACAAAAATAGTGACAGCCACACAA
ACACCTGTTGTCACGACAACAAAACAACCAAAGACGACTAAAACAACGAC
CACCACTAAAGCCTCTACAACAAAACGTAAAATTGTGAGACCCAAAACAA
CAAAGATAACTATCCCTAATGGAGTGTGTGGTGACAAGGCTTTCTACTGT
ATGGTTCCCCGTCTATTCAACCCGGAAACGAATTGTATCGGACACACAGC
CACTTGCATCCGGACGTGTGGTGTCTGTAATGGACCTACTAACGAGAAAT
GTGCAAATCTCAAAAACCGCGCGTTAGATTGTAACCGCCGTAATTGCCAA
CATGGAAATCTAGAACAGAGACATAGGAATCGCGTTAATTGCTCTAAAAC
GTGCTGTGAACGTAATCAGTTAcactgaATGAAAATGTTATTGACAAATA
TGATGATGTTAGCGACAACAATTTTGGTGACGACAGCATGGAACCCTTGT
CAAGATAATATTTGGCGTTGCAACAACTATCACCAACCTAAAGGTCTGAG
ATACGTCAAACGTGCGTGTAAAGGGTACGTCAAAATATATTGCCGTAATT
TATGTTCATCAAAATGTTGGCAACATATAGCAAAGAAAGAACCgacaact
acaacaacaacgaccacaaCGACTACCCCTACGACTTCCACGACAAGAGC
TAGAACGTGTTTCGATAAAAGCAACGCCTGCAACCGATACACAAATTATT
GTCGAACAAGTCTTTGGATGAAGAGAAATTGTCAACAGACATGTGGCTTT
TGCAATGGGGGaacgacaacgaccactccaacgacaacaacgaccattcc
aactacaacaacgaccattccaactacaacaacgacaacccctacgacaa
caacaacaaccactccaacgacaacaacgaccacctccacaacaacaacg
accactcccacaacaacaacgaccactcctacaacaacaacgaccaaccc
aacaacgacaacaacgaccactcccatcacgacaacgaccaacTTATGTA
GAATCAAATCAGACGATCGTTCGTGCGCAACCGTCCAACGAAaggaatgt
ttttcaaaaataattggaGAAATAGTCCGATGTTTTTGTCCGATAAAATG
TGCGACAAAAATAGTGACAGCCACACAAACACCTGTTGTCACGACAACAA
AACAACCAAAGACGACTAAAACAACGACCACCACTAAAGCCTCTACAACA
AAACGTAAAATTGTGAGACCCAAAACAACAAAGATAACTATCCCTAATGG
AGTGTGTGGTGACAAGGCTTTCTACTGTATGGTTCCCCGTCTATTCAACC
CGGAAACGAATTGTATCGGACACACAGCCACTTGCATCCGGACGTGTGGT
GTCTGTAATGGACCTACTAACGAGAAATGTGCAAATCTCAAAAACCGCGC
GTTAGATTGTAACCGCCGTAATTGCCAACATGGAAATCTAGAACAGAGAC
ATAGGAATCGCGTTAATTGCTCTAAAACGTGCTGTGAACGTAATCAGTTA
cactgaATGAAAATGTTATTGACAAATATGATGATGTTAGCGACAACAAT
TTTGGTGACGACAGCATGGAACCCTTGTCAAGATAATATTTGGCGTTGCA
ACAACTATCACCAACCTAAAGGTCTGAGATACGTCAAACGTGCGTGTAAA
GGGTACGTCAAAATATATTGCCGTAATTTATGTTCATCAAAATGTTGGCA
ACATATAGCAAAGAAAGAACCgacaactacaacaacaacgaccacaaCGA
CTACCCCTACGACTTCCACGACAAGAGCTAGAACGTGTTTCGATAAAAGC
AACGCCTGCAACCGATACACAAATTATTGTCGAACAAGTCTTTGGATGAA
GAGAAATTGTCAACAGACATGTGGCTTTTGCAATGGGGGaacgacaacga
ccactccaacgacaacaacgaccattccaactacaacaacgaccattcca
actacaacaacgacaacccctacgacaacaacaacaaccactccaacgac
aacaacgaccacctccacaacaacaacgaccactcccacaacaacaacga
ccactcctacaacaacaacgaccaacccaacaacgacaacaacgaccact
cccatcacgacaacgaccaacTTATGTAGAATCAAATCAGACGATCGTTC
GTGCGCAACCGTCCAACGAAaggaatgtttttcaaaaataattggaGAAA
TAGTCCGATGTTTTTGTCCGATAAAATGTGCGACAAAAATAGTGACAGCC
ACACAAACACCTGTTGTCACGACAACAAAACAACCAAAGACGACTAAAAC
AACGACCACCACTAAAGCCTCTACAACAAAACGTAAAATTGTGAGACCCA
AAACAACAAAGATAACTATCCCTAATGGAGTGTGTGGTGACAAGGCTTTC
TACTGTATGGTTCCCCGTCTATTCAACCCGGAAACGAATTGTATCGGACA
CACAGCCACTTGCATCCGGACGTGTGGTGTCTGTAATGGACCTACTAACG
AGAAATGTGCAAATCTCAAAAACCGCGCGTTAGATTGTAACCGCCGTAAT
TGCCAACATGGAAATCTAGAACAGAGACATAGGAATCGCGTTAATTGCTC
TAAAACGTGCTGTGAACGTAATCAGTTAcactgaATGAAAATGTTATTGA
CAAATATGATGATGTTAGCGACAACAATTTTGGTGACGACAGCATGGAAC
CCTTGTCAAGATAATATTTGGCGTTGCAACAACTATCACCAACCTAAAGG
TCTGAGATACGTCAAACGTGCGTGTAAAGGGTACGTCAAAATATATTGCC
GTAATTTATGTTCATCAAAATGTTGGCAACATATAGCAAAGAAAGAACCg
acaactacaacaacaacgaccacaaCGACTACCCCTACGACTTCCACGAC
AAGAGCTAGAACGTGTTTCGATAAAAGCAACGCCTGCAACCGATACACAA
ATTATTGTCGAACAAGTCTTTGGATGAAGAGAAATTGTCAACAGACATGT
GGCTTTTGCAATGGGGGaacgacaacgaccactccaacgacaacaacgac
cattccaactacaacaacgaccattccaactacaacaacgacaaccccta
cgacaacaacaacaaccactccaacgacaacaacgaccacctccacaaca
acaacgaccactcccacaacaacaacgaccactcctacaacaacaacgac
caacccaacaacgacaacaacgaccactcccatcacgacaacgaccaacT
TATGTAGAATCAAATCAGACGATCGTTCGTGCGCAACCGTCCAACGAAag
gaatgtttttcaaaaataattggaGAAATAGTCCGATGTTTTTGTCCGAT
AAAATGTGCGACAAAAATAGTGACAGCCACACAAACACCTGTTGTCACGA
CAACAAAACAACCAAAGACGACTAAAACAACGACCACCACTAAAGCCTCT
ACAACAAAACGTAAAATTGTGAGACCCAAAACAACAAAGATAACTATCCC
TAATGGAGTGTGTGGTGACAAGGCTTTCTACTGTATGGTTCCCCGTCTAT
TCAACCCGGAAACGAATTGTATCGGACACACAGCCACTTGCATCCGGACG
TGTGGTGTCTGTAATGGACCTACTAACGAGAAATGTGCAAATCTCAAAAA
CCGCGCGTTAGATTGTAACCGCCGTAATTGCCAACATGGAAATCTAGAAC
AGAGACATAGGAATCGCGTTAATTGCTCTAAAACGTGCTGTGAACGTAAT
CAGTTAcactga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15988MSTRG.15988Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15988.1.p1MSTRG.15988.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15988.1.p1.exon1MSTRG.15988.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15988.1.p1.exon2MSTRG.15988.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15988.1.p1.exon3MSTRG.15988.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15988.1.p1.exon4MSTRG.15988.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147_pilongenomesc0000147_pilon:70999..74324 +