MSTRG.15956.1.p1 (mRNA) -

Overview
NameMSTRG.15956.1.p1
Unique NameMSTRG.15956.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000146_pilon:182848..185510+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15956.1.p1 ID=MSTRG.15956.1.p1|Name=MSTRG.15956.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2663bp|location=Sequence derived from alignment at sc0000146_pilon:182848..185510+ (Clytia hemisphaerica_ch_hm2_pilon)
GCTTTCAAGAGTTTGGTGCAAAACCAATCTGTAAGGTATAATGTTAATTA
TGTTAATtatgtaaaattttttaaactgaaCTTAATAAATGGCATAAGCT
ATGCACTTGGTTCGAAtcatgtcatttattttttatggcacacccggtat
atatttttaagcaattcaaagaatttctgtccagggtggcagagcagcat
atgcatttcgtccggGTTGACTCATCAGCATGGCctactgcaccctggct
agcCAGATCGAATCGGTAATCAGCAGATGTAGTGGACGGCGTCCTTGACA
ACCATGCTATTTTTGAAAGACAAAATATTACTGCCCACTAAGTTGATGAT
TGTGTAAGTGAATAGTTCTAACACAATATCTAATCCTTTGCTtcacattt
tcttattttagaaTAATCACTGCGAAAGAAATGAGAGCCCAAATTGCAAA
TTATGCTGACATCATCGAAGCTGCCGTCAAACAGCCAGAATACAAGTAAA
TTTTTATGTTATTAGCTAATGATTTGAGTCTATTCACATCGATTACGATT
TTGATGCTTTCCCTGGCGACGGATCAAAACAGATACTTTTGATTTTACCt
tctttgaaaaacattttcaataccTCTTCCATGATGCAAAATTGtactat
tatttttattaggCTTAGCAGACCTGTTATCAGTGTTAGAAGATACTTTA
GAAATCGAAGGTATTTGTTAATTGGTTTTAGtaaacaaaatttaaagaaa
ctgaacgttgtgtttttctaaccacttactatttttttttcttgaatctA
CTTAtttttttAATCCTGTGAAATTGCATGACCAACTCGGAttgataatt
catttttaataaaCAACAGTATGATAACCCAGtttttttAGCCTTACCCA
GAAGCACCTTATACAAGTataattaatttgttgtttgtCTAATTTTCTTC
AGGTATCTTCTAGTAGATGGTTTAACTCTGCTGAAGCAACCTGTCATATT
TAAGGTATTGGTCATTTTGTGGTGATGCTTAACGTTTgattgatttctaa
aaaaatgtccTTTGAATCTGGAACTCTTGTAGAGAACTAGAAGTATGTTA
GAAATCAACGTTTTTCTGATTTCAGGACATTTTTGTATCATATATTCTCT
TCTTTCCTTACCTAAAAACTTTCTGAGTAGTGGTCCTCAATACTTATtaa
ttcaaatcttttatttttaaaaaattcatcgTTACCTTAAAAATTGTCAT
TGTCTCTACATATTCAATGTCCATTTAataatcaggtaggtccataaaag
taatGCAATTATCCTTCGTTATACATTgtatctgttttttttatttcatt
ttttaggaTGTATATCATGCCATAGGAAATGATGAATGTCTTTGCAAGGT
ACATTTAGAATGTGTTCGTACTAAAATATCAGATTTTGTTAAGTAACGTG
GTGGCCGTAAGTaaatctttgaaatattttagtgCATTGGTACCATAATT
AGCACATTTTACAAATTTATGAATCGTCGTGATTATACAAAAATAGAACA
GATCTATTTCGCTCCATTGTCTCAGGGACAAAATTTGAGTGtttttcggg
tttttctctctttttttgtgccacaaaacaaaacaaaaaaccatGCGACA
CGACGATTTTTTCACACGTTGGTGCAATGGAGCAATGTCTCACTGGTGGA
GCAATGTCTCATTGCACCAACGCGGAAAAGAAAATCTCGTGTCGCCGTAG
CTTTATCAGTAATTCCTTTTTAAATTGTTATAGGAAGAAGAGATGTCGGA
CATTCCCATTGATTTCGACCGTGACGCACCAGATGATATCTTCTTCCATG
TAAATATACTGTGGAAACtttgtttgtctattttgcccattttttgctct
ttttggaGTACTTTGAATTGAAGGACCATACAAATTTATAACAAGATaca
tctttttggacctaccttaggGGGAGGGGGTCCTATAATATgtttgtccg
tccgtctgttacttATGAACTTTTCTAGGGATTGGCTCAttcgatttttc
tgattttttgcacaatgatgcaaacgGTAATTCccaatgtgacggagccc
gattttcgaaaatgaatttttttcggtcACCAGATCCGGAATTAGCATCC
CCTATAACATTCGTATATCGTAAAAGGGGTTAAGCGCGAAACgataacaa
aacaaatttgacGGGGATGCTGGCAGCCTAGCTTGGAATtatgcttaatt
ttttggccattttcagcctcgatatgcttataaaaaaagagtgtaggtAT
GAAAGATCTGAttacatattttgaagtttgaagtttttgtttagtgaata
ttgacatttttggtgcagtagttttttttcatcttcatttttctttttca
ttttcgattttttttcaaacttttaaattcttaaaatacTTCATTCATTA
AAATCTTTCCAGAAAGGCATTAGTTTACAATAGCACTCTTCAATTAAGAG
ACTGACGACTGCCTATTTTGTTTAAAGAGACTTTAATATAGATTTCCAAG
TGCTTCAAAAGGTTTATCCTGATTTATTCTCATTGATATTAATTTTAAAG
GACGATAATCCTCGTCGAATATGGTGTGGCATCGATACTGGTCTGAAGGA
ATCACTAGAAACA

Coding sequence (CDS) from alignment at sc0000146_pilon:182848..185510+

>MSTRG.15956.1.p1 ID=MSTRG.15956.1.p1|Name=MSTRG.15956.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2730bp|location=Sequence derived from alignment at sc0000146_pilon:182848..185510+ (Clytia hemisphaerica_ch_hm2_pilon)
GCTTTCAAGAGTTTGGTGCAAAACCAATCTGTAAGaaTAATCACTGCGAA
AGAAATGAGAGCCCAAATTGCAAATTATGCTGACATCATCGAAGCTGCCG
TCAAACAGCCAGAATACAAgCTTAGCAGACCTGTTATCAGTGTTAGAAGA
TACTTTAGAAATCGAAGGTATCTTCTAGTAGATGGTTTAACTCTGCTGAA
GCAACCTGTCATATTTAAGgaTGTATATCATGCCATAGGAAATGATGAAT
GTCTTTGCAAGGAAGAAGAGATGTCGGACATTCCCATTGATTTCGACCGT
GACGCACCAGATGATATCTTCTTCCATGACGATAATCCTCGTCGAATATG
GTGTGGCATCGATACTGGTCTGAAGGAATCACTAGAAACAGCTTTCAAGA
GTTTGGTGCAAAACCAATCTGTAAGaaTAATCACTGCGAAAGAAATGAGA
GCCCAAATTGCAAATTATGCTGACATCATCGAAGCTGCCGTCAAACAGCC
AGAATACAAgCTTAGCAGACCTGTTATCAGTGTTAGAAGATACTTTAGAA
ATCGAAGGTATCTTCTAGTAGATGGTTTAACTCTGCTGAAGCAACCTGTC
ATATTTAAGgaTGTATATCATGCCATAGGAAATGATGAATGTCTTTGCAA
GGAAGAAGAGATGTCGGACATTCCCATTGATTTCGACCGTGACGCACCAG
ATGATATCTTCTTCCATGACGATAATCCTCGTCGAATATGGTGTGGCATC
GATACTGGTCTGAAGGAATCACTAGAAACAGCTTTCAAGAGTTTGGTGCA
AAACCAATCTGTAAGaaTAATCACTGCGAAAGAAATGAGAGCCCAAATTG
CAAATTATGCTGACATCATCGAAGCTGCCGTCAAACAGCCAGAATACAAg
CTTAGCAGACCTGTTATCAGTGTTAGAAGATACTTTAGAAATCGAAGGTA
TCTTCTAGTAGATGGTTTAACTCTGCTGAAGCAACCTGTCATATTTAAGg
aTGTATATCATGCCATAGGAAATGATGAATGTCTTTGCAAGGAAGAAGAG
ATGTCGGACATTCCCATTGATTTCGACCGTGACGCACCAGATGATATCTT
CTTCCATGACGATAATCCTCGTCGAATATGGTGTGGCATCGATACTGGTC
TGAAGGAATCACTAGAAACAGCTTTCAAGAGTTTGGTGCAAAACCAATCT
GTAAGaaTAATCACTGCGAAAGAAATGAGAGCCCAAATTGCAAATTATGC
TGACATCATCGAAGCTGCCGTCAAACAGCCAGAATACAAgCTTAGCAGAC
CTGTTATCAGTGTTAGAAGATACTTTAGAAATCGAAGGTATCTTCTAGTA
GATGGTTTAACTCTGCTGAAGCAACCTGTCATATTTAAGgaTGTATATCA
TGCCATAGGAAATGATGAATGTCTTTGCAAGGAAGAAGAGATGTCGGACA
TTCCCATTGATTTCGACCGTGACGCACCAGATGATATCTTCTTCCATGAC
GATAATCCTCGTCGAATATGGTGTGGCATCGATACTGGTCTGAAGGAATC
ACTAGAAACAGCTTTCAAGAGTTTGGTGCAAAACCAATCTGTAAGaaTAA
TCACTGCGAAAGAAATGAGAGCCCAAATTGCAAATTATGCTGACATCATC
GAAGCTGCCGTCAAACAGCCAGAATACAAgCTTAGCAGACCTGTTATCAG
TGTTAGAAGATACTTTAGAAATCGAAGGTATCTTCTAGTAGATGGTTTAA
CTCTGCTGAAGCAACCTGTCATATTTAAGgaTGTATATCATGCCATAGGA
AATGATGAATGTCTTTGCAAGGAAGAAGAGATGTCGGACATTCCCATTGA
TTTCGACCGTGACGCACCAGATGATATCTTCTTCCATGACGATAATCCTC
GTCGAATATGGTGTGGCATCGATACTGGTCTGAAGGAATCACTAGAAACA
GCTTTCAAGAGTTTGGTGCAAAACCAATCTGTAAGaaTAATCACTGCGAA
AGAAATGAGAGCCCAAATTGCAAATTATGCTGACATCATCGAAGCTGCCG
TCAAACAGCCAGAATACAAgCTTAGCAGACCTGTTATCAGTGTTAGAAGA
TACTTTAGAAATCGAAGGTATCTTCTAGTAGATGGTTTAACTCTGCTGAA
GCAACCTGTCATATTTAAGgaTGTATATCATGCCATAGGAAATGATGAAT
GTCTTTGCAAGGAAGAAGAGATGTCGGACATTCCCATTGATTTCGACCGT
GACGCACCAGATGATATCTTCTTCCATGACGATAATCCTCGTCGAATATG
GTGTGGCATCGATACTGGTCTGAAGGAATCACTAGAAACAGCTTTCAAGA
GTTTGGTGCAAAACCAATCTGTAAGaaTAATCACTGCGAAAGAAATGAGA
GCCCAAATTGCAAATTATGCTGACATCATCGAAGCTGCCGTCAAACAGCC
AGAATACAAgCTTAGCAGACCTGTTATCAGTGTTAGAAGATACTTTAGAA
ATCGAAGGTATCTTCTAGTAGATGGTTTAACTCTGCTGAAGCAACCTGTC
ATATTTAAGgaTGTATATCATGCCATAGGAAATGATGAATGTCTTTGCAA
GGAAGAAGAGATGTCGGACATTCCCATTGATTTCGACCGTGACGCACCAG
ATGATATCTTCTTCCATGACGATAATCCTCGTCGAATATGGTGTGGCATC
GATACTGGTCTGAAGGAATCACTAGAAACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15956MSTRG.15956Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15956.1.p1MSTRG.15956.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15956.1.p1.exon1MSTRG.15956.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15956.1.p1.exon2MSTRG.15956.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15956.1.p1.exon3MSTRG.15956.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15956.1.p1.exon4MSTRG.15956.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15956.1.p1.exon5MSTRG.15956.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15956.1.p1.exon6MSTRG.15956.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15956.1.p1.exon7MSTRG.15956.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146_pilongenomesc0000146_pilon:182848..185510 +