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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000145_pilon:554411..559927+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.15924.1.p1 ID=MSTRG.15924.1.p1|Name=MSTRG.15924.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5517bp|location=Sequence derived from alignment at sc0000145_pilon:554411..559927+ (Clytia hemisphaerica_ch_hm2_pilon)
CCcagatggcacacaacgttttttcgacgttcatctaacgttcacaacgt
ccacataacgttaggtgaacgttgaaacaacactgtgtgccagctgggat
gcgAAACTCTATTCCTTCTATTCAGgaaaaataatcaagtacaaaaaata
aattccagaaaagaattttcaaaagaatataTCAGAACCCCCatgaagaa
aacaacaaatGACATCCTGACTAAAGAAGAAGGACGGAAGGAAACACAAT
TTTTAAAGCTGGTAACCAAGGCAACATTATAAACAAAATAGGCAATAACA
ATAAAAATGGCACCGAATAATACAACAAACGGCACGCTATCAGAATTGTT
GGTCACCACGGCGATAGTACCGACTATATCAACATTCCCACCGCTGACAG
AACACGAGTTAAAGAAACAGAAGTTATTCTCCATCCTTGTGATAGCATGT
TTCTTCTCATTCCTCATTTTTGTAATTGGTTACGTAACTTTCACACACGT
CAAAAGAAATAGAAGGTAGGTAGGTAGTTTTGCGATCCAGGTTCCCTTAG
TCTGCTGGCATtcaagcgaccgtagtgcagtggtagagcatccagctacg
gttgtgggttcaacccccagccgggtcatgtaccaaagattcccaaaatg
gtacttgatgcctctgtgcttgatgctcagaaattaagagaaggatcaag
gataagtggagcaatccagggagaaagagtggtgccaTCCACAACCTTCG
TGTAGATAGTTTAtagaaagaggagccttcgggtcgcctccgactgtggt
CGCAGACTTATTTACTattgctggcatccactaacggattagTGCTTCTT
ATACTGTCTGCGCTTTTGTAAAGACCTGCGATTCAGACCTAAGGTTCCCT
ACATTGTGTTAAAGCACCAAAAGAACTAGAGTTGGAACTCTTGAATGGGA
GACGAAGGAACTTATTCGAATTTGCAAAGCGTGGCCCGAGTAATTTTccc
acaaacgccagattgaaattaaaatccaacgccagattttcaaaaatatg
ccgcatgtgaaaacaaaaaataaacttgACATTCCATACGTCATTTTGaa
ataccgtgagtatcacagctcggaATAATCTCAACATTTTCTCTGATTAA
ACCTTGGTCTCTGGTACCCAGGGTTATTATAAAAGCGTCTCAAAGCTTAA
GTTTTACTTGCTTGCGAAAGACTTGCGGTTGAAGATTTCTCTCTAGCCCT
TCAAGCTtcaaagagaaagaaaatatcGATCATTAGCCTGCTTCGACGGG
TTAAAAAGCGGCTCATGTCTTGGGTAAGAAGTACTGTAGTAATCTTTATT
ATCGTGCGATACGTGTTTCCATAAAGAAATTCCAAATATACTTTCAGGAT
AATAGAAGAGAAGCGAGCGCTTGAAGCGGAAGAAGAAGACAAACCAAAAA
TCAATCGAAGAACTTCAGTCATGGGTCAAGGACAAAAACAAGTTGTGTAA
GTCTAGAAGACCCAAGAACCATTTCTCTCCCGAGTGCCTATTCGTGTAAG
CAACGTCCCCACATTATTGTACCAGAAAGAGTACGCATGTACCAATACTC
TTCACAAAGTATGCATTGACCCGAACAAAGGTGCATCTCCTTTCCAAGTA
AATCATAacaccgagtgggaatcgaatcTCTGGTAACACAAATTTTATCT
TTCCACTTAGTTATTCCGAATGATGAAAAGTTCTCGATAGTTTCCTGATT
TACGAATTTTAACCAATTAGATGACTAGTGTAATATCATAAACTTAATTT
GTTTGTTTAGAATCGAACGTAAAGCAAGTGTTTTGTCAGGTCACCGAAAG
TCAAGTAGTATTTCGTCACCAGTCGGCAACGGTAGGTTTTTAATGTTTCT
CTTGTCCAAAGTTTCACTGAAGAGAACAATGACTATTGGGTTTGGCAGCT
CCGAAGGATCTAGAAGTGAAGTTTTGACCATTggatttaaagggataatc
agatggtttgagataatTAGCGTGCAGAAACCTTTCGTAGTCCTGAGTAA
AACCTCCAAgtactattttccaaagtcgagatatcataatttgaaatttc
tgaaaataagctgaaaaggttgaaattctattgttttcttactaaaaTGT
ATAAACTTTTAACTTAAATATCtcgattttgtaaaatatttaggcaaaaa
tcaaaaaattatgcCTCAGACCTAATTTCCACATTGTATTCCCTCACCAG
TCGGCAATGGTaggtttttaaatgtttctcTTGTCCAAAGTTTCACTGAA
GAGAACAATGACCGTTGGATTCAAAAGCTCCGAAGGGTCTAGAAGTGAAG
GTTTGACATTTTGTTTTGACACGGCTTATGAAAGTCGAGAGGCctagttt
tgataaaaaaggggaattccttgcaaaattaaaaaagtgcCCTAGCGtat
agttttaactctgagtttcaaCATGACACTTAACACTTGGACCTCAGGAT
CTCGGGCTGTAATAGCTCGAAAATGCttcaataaggctgagaatataatA
ATAGCGTTCAgttagagggctaataatcaaattgcaagggcagaataaat
gacaacaacgaacgaaagcttaacgctattactattattatccatatcag
ACAtgcaaacaacgtttttttctagcgtcagccaagtattttcgcttcaa
tgcaattcctttaaaaagttttgagtaCCCCTGctagcgggccgcaaatg
accaaaaagtatttttttctgacgtcggtttagtctaaccgcttcaatgc
aatgacttcaataaagttcctagcgggccgcaaatgacgttatcgcccta
taaccagggcggttaatgatacttcagccctctgaagcgcGACGCTTATT
TTTCTCAGCGCGCGTATGAAtatttgagtcatagaacctttcaataccgc
ccgccgttcgaatctttaatggcttacttaatgactgttatatggataat
aatataaaataaacccctctcaaatcgaaatatccaatgaaatTAATACG
TACTAAATTAATACGGAAATCTCGCTCGAACACGAATtctaaaaactgtt
aaaataactAAAATTGTATTGACCTCTTTTTTGGGCTTGTGAAGATCAAA
ATAACCGCTAGTGTCCGATCTGACAAAACCTTTTTGACAGCTTTCGATAC
GGCGAACACGTTGAGGATGGTTAAAATTTTGAGGCTTATGACCTGATTGA
AAGCTCATAAGCTAATAGTTAGACATTGAGGTAGAAGTTTTTATTATCCA
CAAATCTAAATATTTGCTTATATCTGGAAACTTATTCTTATTGATGATGA
TGAGTAAAGAATTCAATACAACTCAATGATCTAAATCTCAAAGCCAGAAT
TtagcattaaaattttcataataacTTGAAAGCCAGCGTTAGGCAGTAAT
CCGATTGCTTGAaagtatcccagctggcacacaacgttgtttcaacgttc
atctaacgttatatggactttgttaacgttaaataaacgttgaaacaacg
ttgtgtaccaccTGGGATGGTATAAAACCACCCGATTTTTGTCAACAGTA
ATGTTTGATTATACGTCAAAGATAACTTAATGTTATTGACTCTTtccctt
ttcattttttctaaattcttcTTGTTTTTAGGTCAAAACAACCACAATCA
ACAAGCGCCGCAACTCAACACAAAGCTTTTACGCCAACCACCCCAACCAT
GGCTTAACATACCGCAGATGCCCGCCCATTTTCAACCACCACAAATGGGC
GGTCAACAACCGATCAATTTACACATGAACGGACCGGTGGGCGGATATAG
TATTCCTCCGCCCATCACACATTCAAGGATAGAAGATAATTATACATTTC
CGAATACATATCCAATGAACGCTTTTAATGAGAATGTATTAGTAAGATAT
TGTCAGCCCGATTTGAAGGAGAGACATCCTACGGAGGAGGGAGAAAGTGG
ACTCTCCAGCAGTGGGAGTATGGAGGACAGTAAGAAACTTGACGAAGAAG
ACCACGAGGATGGAGAGCAAAGCGATGGAGATGAAACGGAGGAGAACGAC
CACGTGTTCCGAAGCATAAGTACCAACGAAAGTGAACCGTCGGTAGTCAG
CGAGAATTATCGGTTCGCGACCGAGGATACGAGATTATTAGCCGCGTCGT
AGAAATATATATGTTTAAATCAATCGATCCAAAAGTGAAATAATTACTTA
TGTTTTGATGATAGCGGCTGAAGGAGATTTGGTTTGACCTAGCTGGTACC
GGACGTTGTTCCGATgttcaaccaaaattttatgGCTGTTATGAACTTTA
AATGGACGCTGTTATGACGTTTGGTATCAGCTGGGCTCATGGTATACAAT
ACTAGTTATAACATCTTAAAAAGGACAAAAAGGAAGCTTGGTTAAAGATG
TAGTATGATGACTTTACCAAAGAAATTCAGTTAATTGTTGTTCGAGCCGG
TAACATTTGTGCACAAGGCAGTAAAAAGATTGGTAAAAATCTTTGGATTT
TAGGATAAAGTACCAACTAAATGAGagtatgaaaaaaaatacaagttttg
taatttttgtgaattttcttgGTGAATCAATATGAATTAAATTGAAGGAG
AAGTACTCAATTTATAGGAATAAAAAATCTTAAGATATAGTTATATTATT
GCTagcaaaaaaatgtagaaattttttgaatattattCTTAGATATATTT
ATTGTAaagaatcttataaaaaatgtgataTCTTGAAGGGTGTTATTCTA
GGGATGTATACACCATGAACTTtcaagtccgaagggctagactcgagact
cgtGGATGGGAAATGCAGCCACTTAATGTCCCATCCAGAATGCTGGtatg
gtttttacacaaacgccggattgaaagtaaaattcttcactagatttaaa
aaaatgcagtcctcaaaaacaaatgaACCGCTAAATACAattcgtcgtca
tgattgcggcgcgttctacGGACGTTCtcgatgggaaataagtggcttcg
ctttttcttgcttgaaaaaggttagagattctactctagcccttcgggct
tttaacTCAATGGAATAGACTACTTCCACAGGGTGCGCCTctttttaaag
tgaatttttgcacagaaaaacatttttgaaaaagtaccGCGTTTTCTTTC
ACCTTAATATACGCCATTCATCACCTTGCTTCCCATCTTGATAAAGTTGG
ACAGcttttactcaaatttggccaaaacatAATTATATATATTTCGGTGC
AGGTGTGTACCTTCACATCctccctgaccagtgggcaccaatCGAACCCC
CAGGAACCCCTGTCAGTATATCCCAGTAGCCATTTACCTACATCTTTCGC
CCCAGGCTCTAAAACTAAAACTGTATCGTGATATAACACATTACACAGCA
ATATCAATCATTATATTGTTATTACTATGATGTTACcggaattcaatttt
tcaagagaAAAATAGCT Coding sequence (CDS) from alignment at sc0000145_pilon:554411..559927+ >MSTRG.15924.1.p1 ID=MSTRG.15924.1.p1|Name=MSTRG.15924.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3600bp|location=Sequence derived from alignment at sc0000145_pilon:554411..559927+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCACCGAATAATACAACAAACGGCACGCTATCAGAATTGTTGGTCAC
CACGGCGATAGTACCGACTATATCAACATTCCCACCGCTGACAGAACACG
AGTTAAAGAAACAGAAGTTATTCTCCATCCTTGTGATAGCATGTTTCTTC
TCATTCCTCATTTTTGTAATTGGTTACGTAACTTTCACACACGTCAAAAG
AAATAGAAGGATAATAGAAGAGAAGCGAGCGCTTGAAGCGGAAGAAGAAG
ACAAACCAAAAATCAATCGAAGAACTTCAGTCATGGGTCAAGGACAAAAA
CAAGTTGTAATCGAACGTAAAGCAAGTGTTTTGTCAGGTCACCGAAAGTC
AAGTAGTATTTCGTCACCAGTCGGCAACGGTCAAAACAACCACAATCAAC
AAGCGCCGCAACTCAACACAAAGCTTTTACGCCAACCACCCCAACCATGG
CTTAACATACCGCAGATGCCCGCCCATTTTCAACCACCACAAATGGGCGG
TCAACAACCGATCAATTTACACATGAACGGACCGGTGGGCGGATATAGTA
TTCCTCCGCCCATCACACATTCAAGGATAGAAGATAATTATACATTTCCG
AATACATATCCAATGAACGCTTTTAATGAGAATGTATTAGTAAGATATTG
TCAGCCCGATTTGAAGGAGAGACATCCTACGGAGGAGGGAGAAAGTGGAC
TCTCCAGCAGTGGGAGTATGGAGGACAGTAAGAAACTTGACGAAGAAGAC
CACGAGGATGGAGAGCAAAGCGATGGAGATGAAACGGAGGAGAACGACCA
CGTGTTCCGAAGCATAAGTACCAACGAAAGTGAACCGTCGGTAGTCAGCG
AGAATTATCGGTTCGCGACCGAGGATACGAGATTATTAGCCGCGTCGTAG
ATGGCACCGAATAATACAACAAACGGCACGCTATCAGAATTGTTGGTCAC
CACGGCGATAGTACCGACTATATCAACATTCCCACCGCTGACAGAACACG
AGTTAAAGAAACAGAAGTTATTCTCCATCCTTGTGATAGCATGTTTCTTC
TCATTCCTCATTTTTGTAATTGGTTACGTAACTTTCACACACGTCAAAAG
AAATAGAAGGATAATAGAAGAGAAGCGAGCGCTTGAAGCGGAAGAAGAAG
ACAAACCAAAAATCAATCGAAGAACTTCAGTCATGGGTCAAGGACAAAAA
CAAGTTGTAATCGAACGTAAAGCAAGTGTTTTGTCAGGTCACCGAAAGTC
AAGTAGTATTTCGTCACCAGTCGGCAACGGTCAAAACAACCACAATCAAC
AAGCGCCGCAACTCAACACAAAGCTTTTACGCCAACCACCCCAACCATGG
CTTAACATACCGCAGATGCCCGCCCATTTTCAACCACCACAAATGGGCGG
TCAACAACCGATCAATTTACACATGAACGGACCGGTGGGCGGATATAGTA
TTCCTCCGCCCATCACACATTCAAGGATAGAAGATAATTATACATTTCCG
AATACATATCCAATGAACGCTTTTAATGAGAATGTATTAGTAAGATATTG
TCAGCCCGATTTGAAGGAGAGACATCCTACGGAGGAGGGAGAAAGTGGAC
TCTCCAGCAGTGGGAGTATGGAGGACAGTAAGAAACTTGACGAAGAAGAC
CACGAGGATGGAGAGCAAAGCGATGGAGATGAAACGGAGGAGAACGACCA
CGTGTTCCGAAGCATAAGTACCAACGAAAGTGAACCGTCGGTAGTCAGCG
AGAATTATCGGTTCGCGACCGAGGATACGAGATTATTAGCCGCGTCGTAG
ATGGCACCGAATAATACAACAAACGGCACGCTATCAGAATTGTTGGTCAC
CACGGCGATAGTACCGACTATATCAACATTCCCACCGCTGACAGAACACG
AGTTAAAGAAACAGAAGTTATTCTCCATCCTTGTGATAGCATGTTTCTTC
TCATTCCTCATTTTTGTAATTGGTTACGTAACTTTCACACACGTCAAAAG
AAATAGAAGGATAATAGAAGAGAAGCGAGCGCTTGAAGCGGAAGAAGAAG
ACAAACCAAAAATCAATCGAAGAACTTCAGTCATGGGTCAAGGACAAAAA
CAAGTTGTAATCGAACGTAAAGCAAGTGTTTTGTCAGGTCACCGAAAGTC
AAGTAGTATTTCGTCACCAGTCGGCAACGGTCAAAACAACCACAATCAAC
AAGCGCCGCAACTCAACACAAAGCTTTTACGCCAACCACCCCAACCATGG
CTTAACATACCGCAGATGCCCGCCCATTTTCAACCACCACAAATGGGCGG
TCAACAACCGATCAATTTACACATGAACGGACCGGTGGGCGGATATAGTA
TTCCTCCGCCCATCACACATTCAAGGATAGAAGATAATTATACATTTCCG
AATACATATCCAATGAACGCTTTTAATGAGAATGTATTAGTAAGATATTG
TCAGCCCGATTTGAAGGAGAGACATCCTACGGAGGAGGGAGAAAGTGGAC
TCTCCAGCAGTGGGAGTATGGAGGACAGTAAGAAACTTGACGAAGAAGAC
CACGAGGATGGAGAGCAAAGCGATGGAGATGAAACGGAGGAGAACGACCA
CGTGTTCCGAAGCATAAGTACCAACGAAAGTGAACCGTCGGTAGTCAGCG
AGAATTATCGGTTCGCGACCGAGGATACGAGATTATTAGCCGCGTCGTAG
ATGGCACCGAATAATACAACAAACGGCACGCTATCAGAATTGTTGGTCAC
CACGGCGATAGTACCGACTATATCAACATTCCCACCGCTGACAGAACACG
AGTTAAAGAAACAGAAGTTATTCTCCATCCTTGTGATAGCATGTTTCTTC
TCATTCCTCATTTTTGTAATTGGTTACGTAACTTTCACACACGTCAAAAG
AAATAGAAGGATAATAGAAGAGAAGCGAGCGCTTGAAGCGGAAGAAGAAG
ACAAACCAAAAATCAATCGAAGAACTTCAGTCATGGGTCAAGGACAAAAA
CAAGTTGTAATCGAACGTAAAGCAAGTGTTTTGTCAGGTCACCGAAAGTC
AAGTAGTATTTCGTCACCAGTCGGCAACGGTCAAAACAACCACAATCAAC
AAGCGCCGCAACTCAACACAAAGCTTTTACGCCAACCACCCCAACCATGG
CTTAACATACCGCAGATGCCCGCCCATTTTCAACCACCACAAATGGGCGG
TCAACAACCGATCAATTTACACATGAACGGACCGGTGGGCGGATATAGTA
TTCCTCCGCCCATCACACATTCAAGGATAGAAGATAATTATACATTTCCG
AATACATATCCAATGAACGCTTTTAATGAGAATGTATTAGTAAGATATTG
TCAGCCCGATTTGAAGGAGAGACATCCTACGGAGGAGGGAGAAAGTGGAC
TCTCCAGCAGTGGGAGTATGGAGGACAGTAAGAAACTTGACGAAGAAGAC
CACGAGGATGGAGAGCAAAGCGATGGAGATGAAACGGAGGAGAACGACCA
CGTGTTCCGAAGCATAAGTACCAACGAAAGTGAACCGTCGGTAGTCAGCG
AGAATTATCGGTTCGCGACCGAGGATACGAGATTATTAGCCGCGTCGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145_pilon | genome | sc0000145_pilon:554411..559927 + |
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