MSTRG.1578.1.p1 (mRNA) -

Overview
NameMSTRG.1578.1.p1
Unique NameMSTRG.1578.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000007_pilon:2163299..2169974-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1578.1.p1 ID=MSTRG.1578.1.p1|Name=MSTRG.1578.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6676bp|location=Sequence derived from alignment at sc0000007_pilon:2163299..2169974- (Clytia hemisphaerica_ch_hm2_pilon)
ATTTTTTAAATTATTTTAGATACTCAATTTTGTATCTGAGCGTGGCTATG
GTGAAGATATTCTCCAAAAGATCCGAGCTTCAAAGGTATAAGATTTTTCC
TTTTATTTTAATCTAGTTTGTTAAAACTATGTATTTTACTCAACTTGCTC
AATTTATTTACAAATGCAATATACTACGCCATAATTTTAAGAGAGAATTA
ACCCTTAAATTGAGTTTAAGTTGAACAGAGTTGGATGGAAGTATTTATCA
CTGCAATCTGCTGCAATCTTTGTCTATCAGTTCTAGATCAATCAGTCTAA
GGCAGTCAATTGACGTTTTTCTAACCTAAAATCGATTTGTGAGTCACCCC
TAAGTGACGGAAATGTGTGGTTGCCAAGCATATTGTACTTCTAATTAAGA
ATGAAAATGTGCTTCCATTCTTATTTTTGATATACTAAAAAAGAACATAA
AGTAATATAAGTATGTGATCCAGTATATTTTTTACCTTTCCTAATCTAAT
TCAGGTCACAGTGAACAACATCCACCTTTTTTCAAATAAGGACTTCCTAG
AAATGGGTTTGGCCCTTGCACATTCATACGAAGTCATCAACCAATTTAAC
AAAGTCCACAAATCCAAGCAGCTGAAAAACTTAGTTATCAATGCAAGAAA
GAAAACAAATTCAAAAAAGACTATTCAAATCAAGACATCTAATAATCTTA
ATGTTTCTATGAATTGGTTTGATTATAATCCAGATAAATTCCAATTCTGC
CAGGTATGTCCAGTTTTGTCAAAGCAGGGTTAGAATCTGGCAATATTATT
TTCCACAGTTTTCCATATTTTTTGAAATTGAATATCTTTTAGATCATCAA
GGTCTCGCATAATTTTTGCAGTCAACTTTTCCTTTTTTCTGTTCCATATA
TAATTGAATGAGGTCTTTAATTTACAATTAGCTTTAGTTTCTACAGACAC
TTTGCCCGTAAATTGATTCATTAGTTTTTTCAGATTTTCGGCAGAAAAAG
AAAGAGGGCAAGGTTCTCTAAAAAGTGAGAGCCCCGGTTTTCGAAATTGC
AGTCTGAATTATGTTAACCATTTTTTTCCTATTTTCATGTAACTTAAATC
ATTAGTTAGGTCCATTCAGCATGTTGCTTGTTTAAAGTTTTTTTATCCTG
ATATAATGACTTTTTTCTATCTATAGGTACGAGGTAGTGGTTGCCATTCT
GAAAAATTTCTCAAGTCCGATCCATTATCAATCATTATGGATTACATGAA
GAAGAAATTTTTTCCAAATAATGAAAGTCAGAAAGGACCTATCGTGTATT
TCGAAACAAGTTTTTGGAATAAAAAGACTGGAGATATCTACAATCTGGAA
GAATCGTTATCCGACTTTAAAAGATCAAACGATTTAAAGGACCTAAAGTT
TTCACTTAGAACAAAGAAGAAGTCAAGAATGGATATCCTGGAAATTCGCA
ACAAACACCATTATGATTCTGATACTAGTTTTGACTCTGACTTTGAATCA
CCTTACAAGAGAAAGGTATTCTTAATTTCAACTTAGGTCAACCCTTGCAA
ACCAGGTTGGTCAAGATTGAGAATATCAGCACCTAAGCTTGAGGCTTTTT
CAAAATGTGGAGGAAAAATTAAAACGTTCTGAAAGTTTTTATATAATTAT
GTACCAAGAGCCTAGGTCAAAGCAATCTGCTTCTCTAGAAACTTTTCTTC
TGAGTGATTTCAATCTCAAATTTTAAAGCTTATCATATTATTTTGAGATG
GATGAGAGATGATATAAATTTTTTGAACTTTTCTCAGCATGGTTCTTTGT
TGGACCCTACCAAGGCAGTCCTTTAAATTAGCTCATTTTCGTTTTTCTCA
AGATTTCATCATTAGTTTTTTTTGATTTTTTGTACAAAGATGCATATTCC
ATTAATGTTTTAAATATCTTCAATTTCGAATTTTTGCATTCGTCTGATGT
TAATCATTAGGTAGGCCCACTCAGCATATTGCTTGTTTATTTAGAAACCT
TGTGATGATGTCATTGATTTAAGTGATGATTCCATGACACCAAATTTCTC
AAACAAGGTATTTCTTGAATGTTTTATTCTAAGTCAGAGGTTATGCCTAC
AGTATAAGGGTTATATGCAGTTTGTATTTTAGAAAAGCAGGGCAGTGTCC
CCTTTTTTTTCATATTTGGTGCTTTGGCTGTTTAGTGAAATTTAGTTTCT
CCTTAAACTTTATTTTTTTGCACCTGAACTGTTAGATAATTTTATTTTTT
TAGGATATGTTATCTTCTACTCAAAGAGAACAAAATACTATCAATAATCA
GGTACTTTAAATAATTTGGTACATTTAAATAATCTGGAGTTCCCAACTTT
TACATAGAACATAGAAAGTAAAACCAACTTGAAATAATCCAGATCATTCA
AGCATCTGTACTATAATACTCATCACTCCTGGTGAGCATAATTTTTGGGC
CTACCTTGGAGGTTCTATAAATTAACCTATGTTTGTTTGTTCGTTCGTTT
TTTCATTCTTTCTTTAGTCTGTTACAAGTTTTTTCTAATATTTTGCACAG
TAATGCAAAATAGTGAAACCCAAAAAAGGAAATTCAGAATACACAGAAAG
TTTTGTTTTATACTTTATCTCCAAATACCCCTCCCCTTCTGATTCTAGCT
CTCACTTACCTCACTTCACTATGAAATGGAATAATTTTTTTCATCTTTTT
TTTTATTTTAGGATTTCAAATCTTCTACTTCTGCTGACACTAGACATTCT
TCTATAAGTCAGGTAATCTTGATAATTTTTATTTTCTAAAGTCAGCAACA
GTAAGCCGTAAGCCCTAAAACTCAGCCCTGCAAATTATTATTTTGAGAAG
TTTAATCATTTTCCAATTTTTTACATAATGATTAGCACATTACTGTTTAT
AACTGTTTATACCTTAAGGGAACTGTTTTTTGCGGTTTGCAGTGCAAGAT
TTAATATAAATATTATAATATAAACTGCTAAAAAAGGGTCTTTTGGACTT
GAAATATTGGATTTATTTAGCAAATCACGGTTTCAAAAATTTCGCTTGGA
TAAATTTTAGCGAATATTTGTATTAAATTATCGACTGAATTCGTTTTCCA
GTATTTCTTTGCACTGAAACCCTTCTTATGATAAAAATGTATCAAGGCAA
TATAACCAGAAATTTCGCGCAGATAAATTTTTGCGATCTGTCGATTCGGT
GTGTTTAGCGAGATTTATTTTGGCGAAAATTGGGAAAACTCACAAAAACA
CTAAAATTAGTCTCGCTAAAATGTCTACGATTAAAGTATCTATTCGCAAA
AAATTAATCCACCTAATGGACACAGTTTTAGGAAATACATCATTATTTTA
AATGTTGTAGGAAACAGACAAACAGCTGCAATCTGATGAGAATGATGAGA
AGGTGAATTAATATTAAATCTCTTCAACTACTCTTAGGTTCCAAATAAAC
AAGGGGGGTTAGAAAATTTTCAAAGTTTTAATAAACGGGGGGGCCTAATT
GCCGGGGGGCTGGAAATTGTACTTCTGAAAACCCAAAAATAAGGTAAATA
CAGGCTAAAATCAGGCTTTTTGGAGCAAAATAAGGGGCCTTCTCTTTGAC
AGCTGAAAATATTCTTAAAAATTAATAAACAGGGGGTTCTAATAAGGTCC
GTGGGGTTGGAAAATTAAAAAGCGGGGGGGGGGGCGTTTATTTGGAACCT
AGGAGTACACTTCTAGAGCATGCATTTTCAATGTATACAAATTTTGTTCA
ACACACTTTAGTAGCAAATTGACATTGATACATAATGCTACCACTTCTAT
GGATCTTTAAGGTACTAATCAAATTGTTGATATTTCTTTTAATTAGACAA
CAGATTTGATTGGGAATAATGAAGAACGGGAAAGGTTGCGTCAGAACAGG
AAAGAGAATATCAAGAGTCGTTGGAGAAGGATCGTTTGAACGAAGAAAAC
AAGCAAAGACGCCAAACACTGATGCAAGCAAGGCAATTGAAAGCAGATGC
GATACTAGAGCCCAGCCTTGAAGAAGATCACATTGTGATCAAAATAAGAC
ATCCATCAGTAGGTTAGTATCAGTAAACCAAACACTGGCAAACACAATTA
GTAATATTGTTCTCAGCTCTAATTGAACTAAATCTAAAATTTTTTGGACT
TACCAGAAAGGTCCTTTAAATTTAAATTTTTGTTCATTCGTCCGTTTGTC
TGTTATCAGCTTTTCTCAGGATTGGCTCATTAGTCTTTTCTGATTTTTGC
ATAAAGATAGGGCAAGATGCTCTTAAAAGTGAATCAAGCAGTTTTTTCGG
CAATTTCTTTTGGCGGTAAAAATCAGATTTTCTTATTTGGGGAAATAGAT
TATGCCCAACCCTTAGCACGGTTTCATTTTCAAAAATATCTTTTTATATG
GGGCTGCTTACCTCTAAAACCCTAAAACATTGGAGAGTCAAACATTTTCA
TCTTCATTCAGCATGATTCGGACTACCTTAAGGGGAATATATTCATGCGA
GAATAAATTAGTGTAGAATTAATTAATGCGTGCAACCCCCAAAAAATTTT
GATGTTTTGCGTAATAAATTAATGCAAAAAGTCCCATATTAGGGATTTTG
TGAAATCAATTAATGTGAAATAGAGTTGGGAATGGAACCAGTGAAACTGG
TTTTGGCATTTATTAAGCACCTTACAAGAAATTTAATTTTTCAGATATCC
GCCAAATTAAATTCCCGCCAAAATTTCTTTCTTTAAGGTAGCAGAATAAT
GTCAAATGGGAATACATACAAGTGTTTGATTTACGCCCTAGAGAGTCCAG
AAAGTGAATATTTAGGCTTTACACCTTTTTGCACTTCCACCAGCAATATT
TTAGAAAAAATGCAGAACTTATTAATGCAAACGACCCAGAACGACCAAAA
TTTTCAAGTTTTGTGGAATTTAATTTTGCAAAAAAGGGCAAGATACGTAT
TAATTAATTCCGCATTAATTTCTTCTCGCATTAATTTATTCCCTTACATC
TGGTAGGTCCATTCAGCATGTTTCTTGTTTAATTCAGAGCCTATGCCTTT
TTATAGAATGATATATAAAATAATTGTTACTATTTGACAGAAACCGTTAC
CTAGCTGATCTATAAGGTTTTAATTTTAAATTTAGTCCATATTGTCATGT
TAATTAGATTTACTTTTCCATTTTCAGGAACCAAATCAAGATTATTTTTC
AATAATTCAAGAATGGCTGATGTTTACCATTGGGTTGGTTCCATGTCCAT
GGATCCTGAGTTCTTCCAAATTGTTGATTATGATTGTAAGGTACACTTCC
CTGATTCTATTGCAACGTCAGGTGTTTACAATGTTAAACCTATCGAAGAA
GCAATGAATTTGTCCGAATCCGGAGAAGTGGGATTTGGTGAGTTCTTACC
TGCAGGGAATAAGGTTGTTTGTTCCAAAGAAGAGTTGGAAAGCCTAAGAA
AAACCGAAAGAGAGCGCTTAATTGACAATGGAACAAACTTTGAGTTTGTC
TCGCGAGAGAACATTTACAACGATATGTTGAAGCTTTACAGAAAAAGAGG
TATAACAACGAAGAATGTAGTAATTGAGTTCAATGACGAATCAGGTGAAG
GTGATGGTGTTAGTAGAGATGTTTTTGCAGCTTTTTTTGCAGAGCTCTAC
ACGAAGATGGACGGTGATAACGAGAAAATTCCAACTATCGACATGGATGA
AACTGATTTAGAGGTTATTGGAAAGGTAATAACGCACGCCTATTTGCTTC
ATGGTCTATATCCATTCAAGATAGCACACTGCGCAATGAAATTTGAATTG
TTTGGAAATCTAGATGATGAAGACCTTGTACGTAGTTTTCTAAACTACCT
GCCAGCGAACGAACGCAAAACTATTAATGATTTTGCCGATGGAAAGGTAG
ATAGTGTTCAATCTATCATAAACATTCTAAGTGAAGCTAGATGTTTTCAA
AAGCCTACCAGTGAAAACATATTCAGATTATGTAGAGAAGCTGCTAACCG
ACTTTTGATAAAACAGCCATTTTTTGCTTTCAAAACAATGGTCGAAAGTA
TGGGTCTTTTCTGGAAAAAGCTCACACCAGAAATGTTCGACAATTGCTTG
CTGTCGACGAAACCTTGTGCCAAAACAATCATTAAAACGCTAGACCCTAA
TGAGCACTGTGCCCTCGATGGCAAAATCACCACACATCTACATCGTTTTA
TAGAAAGTGTTAGTGAAGATGAACTAGCATTGTTTGTTAGATTCACGACT
GGGACGTCATCACTCGTCGAAGGAGAAAAGCTTAAAGTTAACTTTGTAGA
AGCAACCTATTTTGCACCTAAATCTTCGACATGTTTTAAAATCCTAACTC
TGCCAAGAATGGTCATGAGTTTCATGAGATTTAGGCAAGAATTTCTTTCA
GTTTTAAACAACAAGTTATCCTGGAGACTTCACGACGATTAGGATCGAGC
TCTACCGTCATCTTTCACGATTTATTTATTCTGTTCTTTTGTTGACAATA
TACTGTCTGAAGTAAATGTTTTACAGGGGTATTTTTGTATTTTCTTAGTT
TGTTTGTAATTACCCTAGCGATTAGGGTTTGAATGAATAGATAACGAAAA
TGGGGTCATTATTGTCAAACTTGGTTAGGATCCTCAAATTGATTTTTACT
TGGAACATGCGTTAAAACTTGTATCA

Coding sequence (CDS) from alignment at sc0000007_pilon:2163299..2169974-

>MSTRG.1578.1.p1 ID=MSTRG.1578.1.p1|Name=MSTRG.1578.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2712bp|location=Sequence derived from alignment at sc0000007_pilon:2163299..2169974- (Clytia hemisphaerica_ch_hm2_pilon)
GAACCAAATCAAGATTATTTTTCAATAATTCAAGAATGGCTGATGTTTAC
CATTGGGTTGGTTCCATGTCCATGGATCCTGAGTTCTTCCAAATTGTTGA
TTATGATTGTAAGGTACACTTCCCTGATTCTATTGCAACGTCAGGTGTTT
ACAATGTTAAACCTATCGAAGAAGCAATGAATTTGTCCGAATCCGGAGAA
GTGGGATTTGGTGAGTTCTTACCTGCAGGGAATAAGGTTGTTTGTTCCAA
AGAAGAGTTGGAAAGCCTAAGAAAAACCGAAAGAGAGCGCTTAATTGACA
ATGGAACAAACTTTGAGTTTGTCTCGCGAGAGAACATTTACAACGATATG
TTGAAGCTTTACAGAAAAAGAGGTATAACAACGAAGAATGTAGTAATTGA
GTTCAATGACGAATCAGGTGAAGGTGATGGTGTTAGTAGAGATGTTTTTG
CAGCTTTTTTTGCAGAGCTCTACACGAAGATGGACGGTGATAACGAGAAA
ATTCCAACTATCGACATGGATGAAACTGATTTAGAGGTTATTGGAAAGGT
AATAACGCACGCCTATTTGCTTCATGGTCTATATCCATTCAAGATAGCAC
ACTGCGCAATGAAATTTGAATTGTTTGGAAATCTAGATGATGAAGACCTT
GTACGTAGTTTTCTAAACTACCTGCCAGCGAACGAACGCAAAACTATTAA
TGATTTTGCCGATGGAAAGGTAGATAGTGTTCAATCTATCATAAACATTC
TAAGTGAAGCTAGATGTTTTCAAAAGCCTACCAGTGAAAACATATTCAGA
TTATGTAGAGAAGCTGCTAACCGACTTTTGATAAAACAGCCATTTTTTGC
TTTCAAAACAATGGTCGAAAGTATGGGTCTTTTCTGGAAAAAGCTCACAC
CAGAAATGTTCGACAATTGCTTGCTGTCGACGAAACCTTGTGCCAAAACA
ATCATTAAAACGCTAGACCCTAATGAGCACTGTGCCCTCGATGGCAAAAT
CACCACACATCTACATCGTTTTATAGAAAGTGTTAGTGAAGATGAACTAG
CATTGTTTGTTAGATTCACGACTGGGACGTCATCACTCGTCGAAGGAGAA
AAGCTTAAAGTTAACTTTGTAGAAGCAACCTATTTTGCACCTAAATCTTC
GACATGTTTTAAAATCCTAACTCTGCCAAGAATGGTCATGAGTTTCATGA
GATTTAGGCAAGAATTTCTTTCAGTTTTAAACAACAAGTTATCCTGGAGA
CTTCACGACGATTAGATGCAAGCAAGGCAATTGAAAGCAGATGCGATACT
AGAGCCCAGCCTTGAAGAAGATCACATTGTGATCAAAATAAGACATCCAT
CAGTAGGAACCAAATCAAGATTATTTTTCAATAATTCAAGAATGGCTGAT
GTTTACCATTGGGTTGGTTCCATGTCCATGGATCCTGAGTTCTTCCAAAT
TGTTGATTATGATTGTAAGGTACACTTCCCTGATTCTATTGCAACGTCAG
GTGTTTACAATGTTAAACCTATCGAAGAAGCAATGAATTTGTCCGAATCC
GGAGAAGTGGGATTTGGTGAGTTCTTACCTGCAGGGAATAAGGTTGTTTG
TTCCAAAGAAGAGTTGGAAAGCCTAAGAAAAACCGAAAGAGAGCGCTTAA
TTGACAATGGAACAAACTTTGAGTTTGTCTCGCGAGAGAACATTTACAAC
GATATGTTGAAGCTTTACAGAAAAAGAGGTATAACAACGAAGAATGTAGT
AATTGAGTTCAATGACGAATCAGGTGAAGGTGATGGTGTTAGTAGAGATG
TTTTTGCAGCTTTTTTTGCAGAGCTCTACACGAAGATGGACGGTGATAAC
GAGAAAATTCCAACTATCGACATGGATGAAACTGATTTAGAGGTTATTGG
AAAGGTAATAACGCACGCCTATTTGCTTCATGGTCTATATCCATTCAAGA
TAGCACACTGCGCAATGAAATTTGAATTGTTTGGAAATCTAGATGATGAA
GACCTTGTACGTAGTTTTCTAAACTACCTGCCAGCGAACGAACGCAAAAC
TATTAATGATTTTGCCGATGGAAAGGTAGATAGTGTTCAATCTATCATAA
ACATTCTAAGTGAAGCTAGATGTTTTCAAAAGCCTACCAGTGAAAACATA
TTCAGATTATGTAGAGAAGCTGCTAACCGACTTTTGATAAAACAGCCATT
TTTTGCTTTCAAAACAATGGTCGAAAGTATGGGTCTTTTCTGGAAAAAGC
TCACACCAGAAATGTTCGACAATTGCTTGCTGTCGACGAAACCTTGTGCC
AAAACAATCATTAAAACGCTAGACCCTAATGAGCACTGTGCCCTCGATGG
CAAAATCACCACACATCTACATCGTTTTATAGAAAGTGTTAGTGAAGATG
AACTAGCATTGTTTGTTAGATTCACGACTGGGACGTCATCACTCGTCGAA
GGAGAAAAGCTTAAAGTTAACTTTGTAGAAGCAACCTATTTTGCACCTAA
ATCTTCGACATGTTTTAAAATCCTAACTCTGCCAAGAATGGTCATGAGTT
TCATGAGATTTAGGCAAGAATTTCTTTCAGTTTTAAACAACAAGTTATCC
TGGAGACTTCACGACGATTAGATGCAAGCAAGGCAATTGAAAGCAGATGC
GATACTAGAGCCCAGCCTTGAAGAAGATCACATTGTGATCAAAATAAGAC
ATCCATCAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1578MSTRG.1578Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1578.1.p1.exon9MSTRG.1578.1.p1.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1578.1.p1.exon8MSTRG.1578.1.p1.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1578.1.p1.exon7MSTRG.1578.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1578.1.p1.exon6MSTRG.1578.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1578.1.p1.exon5MSTRG.1578.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1578.1.p1.exon4MSTRG.1578.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1578.1.p1.exon3MSTRG.1578.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1578.1.p1.exon2MSTRG.1578.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1578.1.p1.exon1MSTRG.1578.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1578.1.p1MSTRG.1578.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007_pilongenomesc0000007_pilon:2163299..2169974 -