MSTRG.15756.1.p1 (mRNA) -

Overview
NameMSTRG.15756.1.p1
Unique NameMSTRG.15756.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000142_pilon:520549..524752-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15756.1.p1 ID=MSTRG.15756.1.p1|Name=MSTRG.15756.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4204bp|location=Sequence derived from alignment at sc0000142_pilon:520549..524752- (Clytia hemisphaerica_ch_hm2_pilon)
GTAAAATCAACAACAAAAAAAAATTAATCAAAAATAATATTAGCACAACC
AAGATGGGAGGTCTAGATGAAACATTCGCTGAAGCGATGGTGGTTGTAAT
GTCATTAATGAGTGCAATCATTATCATTATAAATGCTGGATGTATTTACA
TCATCCAATGGTCTTCAGTTCTCCGTCAAAAAACGGCTAGTATCTTTGTC
TACAGTATATTGACGCTACATTTACTGCAAGGTAAATAAAGGGCCTTTCC
TCACTTTCATCTATATTTTTGTGGAAACAGTCAAAGTGTGCCAAATGAAA
AACAGCCAAAATGATTACAAATGATTATGTCAATAGATTAGTCAAATTAC
GAAAGAAATAAAGTACAATAGAAATTACAGTTAACTTTCTCTAGTTCGAT
ATTGGATTAAGGGCCTTCAATTATAGAATTATAGAAGGAGATTACAGATT
AGAACAAAAAGTTTTACGATTTCAAGGTTGAGCGGATCAATCTTTTAGTT
CGAATTAAAGAGATATTCAAATGATAGAGGTTCAAAATGATAGAGTCAGG
GGTTTTGCTTTGTTTTTGGTAGGCTGGCGAATGAAAAATTAATTCTAGCG
ATTTCTAGATTCTAGGCCGGCGAATTCTTAGCAAGCAGTGTATTGATTAG
CGTAAATATTTGCAAATCTGACTTGCGAATCAAGAAAGTGCTCTATACGA
TATATCAGTCAAGAATAGAGACAAATTTATTTTCCGATACTCGGAGTTTC
GTGGAGCAGACTGTACTCATGATTTTTAGGGGTTAAACTATCGTTATTCG
AATTTATCTCATGCTTGAGTTAGCATGTCTGTCTGTGTTTTTTAATTTTA
TTTAGTCTTCAAAAAATTAACCTCCGTACTATATAACTATCCCTCTTTAA
CCCTTTTCGCCCTACAGCTCCGCTGGGGCAGTCCCCAGATAGGCCTATCA
CTGACGGTCTACATCTTCTAAATGAAGGAGTCTCTTGAGCTTTCGTATCT
TCTCTTGGAAGGAGCAAGAAAGAAGCCGGCCCGTTTTGAGCTGGCCCGTT
TTGAGCTGGCCCGTTTTGAGCTGGCCCGTTTTGAGCTGGCCCTTCCCCTT
CAGCGATGTCTCGTAAAGCAAGAGAAATTCTGAATGTGCAAAGCTCTTGG
ACTGAAAGGGTTAAACTATGGTACTTTAATGTTTTAGGCTGTTTTGTTAT
CCCTTTCTACGCTGCCAAGAAATCAAAAATCGACAGCATTGAATCTAAGA
AATTCATTTGCGATGGTTTCCGATTCAGTTATATGATCACTTTCTATGGA
GCATGTATCAACGTCCTTCTCATCGGTGGAGATCGTTTGCTGGCTATCAG
GCTAATGACGTCGTACAAGCTAGTAGTGACTAGACGGCGTGCCATAATAG
CTACCATTAGCCTGTGGACTTATGTGTTGGTTTTATGTTTAATACCGTTC
GTACCACCAGAGTCTGAAAAGTTTTGCCGTTACAATCAACAGGATGAGTG
GACGACGTTCATGTTGTTTTTCAATACACTGTTACCGTACATATTTGTGA
TTGTCAGCTATATGTATATTACTGTCAAACTGGATGAGATACAACAGAAA
ACGCAAGCGTAAGTCTCACCATTTACAGTCAACTCTCGTCTTATTCCTTA
TTCGAACCTCTATTAAAGCCAGTATATATATTCATGAGTCTGTTTGCTTA
CAGGAGAAAGTTTTGGGAAAAAAACTTACCACTTTTCCAATCTTTCACAC
TTTTACAACTTTCCTAACCAAAACTTTGTAAATGTTTATAAAAATGGGGG
ATTTTCCATGGTTGCAACATGGTAGCACGAAATAGAGAATATTTCCATAA
TTTTTTTCAAGTAAATGTGACCTTGGAAAATCGTAATTTATGCCCGCTAT
AATTTATTCTTTGATGAAATCGAAAGTGAAAGTTCTTTATTCGATTGCTA
TTGGAGGATGATATGCATAATTTTCAGTCGAGTCTGGAATAATTATGACA
TCATAGATCCCATTTTACCACCAAAATACCAAAACTTTGCAAATCCAAAT
GATTGCTGTTGTTTGCTGGGAAAGTTTGGAAAAGTCCTATTTTTCACATC
TTCACAACTTTCAAGGATGCTTTTTTGAGATGGGAAAAATGGGAAGGTAT
AATTTTACAATTTTTACAAACTCTCCAACTTTTCTGGCCAAAACTTTGAG
TTCCCAGCGGGAGAACTGGGAGAATTAGGAGAATTATGTACCAAAACTTT
CTCCTGTTATTCTGCAAAAACATTCCACAGCTCCATTAAAAACGCAAACG
ATTCATTCCAATTCTTATTCGACAGTTTGCAGTCAAAACATTGCAAACTC
TCTGGTCATTAAAATGTTATATTAAAATGAAGACATTGCAGTGTTGAATC
GAACAATTAAGTTACGTCACGCGCTATCTTTTGTTTTGATGATTAGTTTG
ATAATCTTTATGCAAGCTCAGCGTTTTTGAAGCAGCGACCCAGACCTCAG
AAAACATAATGTCAATCTGGCTTTAATTGAATCTTTCTGTCATTCAAGCC
AAACAAATATTGAAATGTAAACTATTTAAAACCTCTCAGCTGAAGAGTAC
CATAAATTCTTCTCCGTAATTCGAATGTTTCTATAATCGGAAGATCTTTA
TTACTCCTTTGAAGAATTCGTATAAGAGAGAGCCAACTATATTAGCATTT
TAAGGGAGCAATGACCAAGTAATCAGAGTACAAGCGCCGAAAACAGGGGT
CCCTAGTTAGAATCCCCCGCTACAGTTCATAGATAGCCAGCGGGCCGTGA
ATCCCGTGAAAACAATCGAAAAACAGTCGAAAGTCATAGATTACTGGGCT
ATCCACGTAAATTATCGACTCTATCCATCCAGTTTTCTTTTCCTTCAATG
ACAGACTAAAAATAATTGATCCTTGCCTGTTATTTTTAATCATTTAGATA
TTTATTTTGAATTAACCCCTTTCAACTTAGTAATCATACATTGGTCATGA
TACCTGCGTGGGATATAAAGGCTCTGACCTTAAAATCGTTGCGGCGGAAA
AAGGTGTCCCCCTACAGGCGTGTACCCCCTACAAGCTTGTTTTTGCCTTG
CGGGGCGTTATCCACAATGAGTTTCCTTAACTCATCTAATATCATATCAT
ATGCATGCTTTATGTAGGTTACATGAACATTGTGCCAATTGTGTAAGCTC
TAGTTTAGACGGACCACTCCCCCCCTGCCTATTCTAATTGTGAATTTAAA
GTAGACTGATAGTTGGTTGTCTAAAGTCAATGCTTTGCCCTCTTTTGGCG
CCAATGGAATGTCTTCTTTCAATCTTTTCCAAGCAATAATTTTACCTACC
TACTTTGCGCCCACTTTTGGCCTACTCAAAAAATTAGAATAGGCAGGGCA
GAAAGTCGGCCGTCTAAACTAGAGCTAACATGCTTATAATTGATAAACTT
TCAATTTAATCAATTAACGACTTTCAGTTACAATCCAGTAGACGGCGACA
ACAAGCCAGTAAAGAAGCGTTCCAGAGCTATCAGCACCTTCAACTTATTC
GTCATCAACAAACACAAAGATAAAGAAAGCGAAGCCGAACGCGAACGTAC
AAAAAACATTCGCAAAGTCACCAAACTGACCTTCATGATCATTCTAACGT
ACGGTTTAACGTGGGCACCATCCATCTTCTATTACATATTACTCAAAGTC
GCGCCGTCAATCTTCACGGAGGAATATAACACGTCACCGGCGGAGAGTTA
CGTAACGTTCTTCATTAAGTTTATTACGTTTTTTGATGCGATTTTCACAC
CCATCATTTACTGTTACTTCCATAATGACTTTCGGAGGGAGTTTGATAAG
TTTTGGAGGAAAGTATTGAAGAAACAAGATGTGGCTGAGATTAAAGATGA
GAATAGTAGTCACAGACCTCGCTCTTGCACTTCTTGGTAAAAGAGAAATG
ATGGTACGCAAATAAATGTAAAAACGATAAGGAATATATTAACGGACATC
GTTTCAACGTTAGCGGATGTTATGAACATTAGATGGACGCTGATTTGACG
TCAAATCTGTGCCTGCGGGGAAGATACACTAAGCGTAAAATCAAAAAAAA
GCTGGACAAAAATATACAGAAATATAGTCCAATAGCGGTATTGGTTGACC
CTGACAAGTAGTATTTCGCCACCGGACTATTATGAGAATAAATCCCCAGC
TGGC

Coding sequence (CDS) from alignment at sc0000142_pilon:520549..524752-

>MSTRG.15756.1.p1 ID=MSTRG.15756.1.p1|Name=MSTRG.15756.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3186bp|location=Sequence derived from alignment at sc0000142_pilon:520549..524752- (Clytia hemisphaerica_ch_hm2_pilon)
TTACAATCCAGTAGACGGCGACAACAAGCCAGTAAAGAAGCGTTCCAGAG
CTATCAGCACCTTCAACTTATTCGTCATCAACAAACACAAAGATAAAGAA
AGCGAAGCCGAACGCGAACGTACAAAAAACATTCGCAAAGTCACCAAACT
GACCTTCATGATCATTCTAACGTACGGTTTAACGTGGGCACCATCCATCT
TCTATTACATATTACTCAAAGTCGCGCCGTCAATCTTCACGGAGGAATAT
AACACGTCACCGGCGGAGAGTTACGTAACGTTCTTCATTAAGTTTATTAC
GTTTTTTGATGCGATTTTCACACCCATCATTTACTGTTACTTCCATAATG
ACTTTCGGAGGGAGTTTGATAAGTTTTGGAGGAAAGTATTGAAGAAACAA
GATGTGGCTGAGATTAAAGATGAGAATAGTAGTCACAGACCTCGCTCTTG
CACTTCTTGGTAAGCTGTTTTGTTATCCCTTTCTACGCTGCCAAGAAATC
AAAAATCGACAGCATTGAATCTAAGAAATTCATTTGCGATGGTTTCCGAT
TCAGTTATATGATCACTTTCTATGGAGCATGTATCAACGTCCTTCTCATC
GGTGGAGATCGTTTGCTGGCTATCAGGCTAATGACGTCGTACAAGCTAGT
AGTGACTAGACGGCGTGCCATAATAGCTACCATTAGCCTGTGGACTTATG
TGTTGGTTTTATGTTTAATACCGTTCGTACCACCAGAGTCTGAAAAGTTT
TGCCGTTACAATCAACAGGATGAGTGGACGACGTTCATGTTGTTTTTCAA
TACACTGTTACCGTACATATTTGTGATTGTCAGCTATATGTATATTACTG
TCAAACTGGATGAGATACAACAGAAAACGCAAGCATGGGAGGTCTAGATG
AAACATTCGCTGAAGCGATGGTGGTTGTAATGTCATTAATGAGTGCAATC
ATTATCATTATAAATGCTGGATGTATTTACATCATCCAATGGTCTTCAGT
TCTCCGTCAAAAAACGGCTAGTATCTTTGTCTACAGTATATTGACGCTAC
ATTTACTGCAAGTTACAATCCAGTAGACGGCGACAACAAGCCAGTAAAGA
AGCGTTCCAGAGCTATCAGCACCTTCAACTTATTCGTCATCAACAAACAC
AAAGATAAAGAAAGCGAAGCCGAACGCGAACGTACAAAAAACATTCGCAA
AGTCACCAAACTGACCTTCATGATCATTCTAACGTACGGTTTAACGTGGG
CACCATCCATCTTCTATTACATATTACTCAAAGTCGCGCCGTCAATCTTC
ACGGAGGAATATAACACGTCACCGGCGGAGAGTTACGTAACGTTCTTCAT
TAAGTTTATTACGTTTTTTGATGCGATTTTCACACCCATCATTTACTGTT
ACTTCCATAATGACTTTCGGAGGGAGTTTGATAAGTTTTGGAGGAAAGTA
TTGAAGAAACAAGATGTGGCTGAGATTAAAGATGAGAATAGTAGTCACAG
ACCTCGCTCTTGCACTTCTTGGTAAGCTGTTTTGTTATCCCTTTCTACGC
TGCCAAGAAATCAAAAATCGACAGCATTGAATCTAAGAAATTCATTTGCG
ATGGTTTCCGATTCAGTTATATGATCACTTTCTATGGAGCATGTATCAAC
GTCCTTCTCATCGGTGGAGATCGTTTGCTGGCTATCAGGCTAATGACGTC
GTACAAGCTAGTAGTGACTAGACGGCGTGCCATAATAGCTACCATTAGCC
TGTGGACTTATGTGTTGGTTTTATGTTTAATACCGTTCGTACCACCAGAG
TCTGAAAAGTTTTGCCGTTACAATCAACAGGATGAGTGGACGACGTTCAT
GTTGTTTTTCAATACACTGTTACCGTACATATTTGTGATTGTCAGCTATA
TGTATATTACTGTCAAACTGGATGAGATACAACAGAAAACGCAAGCATGG
GAGGTCTAGATGAAACATTCGCTGAAGCGATGGTGGTTGTAATGTCATTA
ATGAGTGCAATCATTATCATTATAAATGCTGGATGTATTTACATCATCCA
ATGGTCTTCAGTTCTCCGTCAAAAAACGGCTAGTATCTTTGTCTACAGTA
TATTGACGCTACATTTACTGCAAGTTACAATCCAGTAGACGGCGACAACA
AGCCAGTAAAGAAGCGTTCCAGAGCTATCAGCACCTTCAACTTATTCGTC
ATCAACAAACACAAAGATAAAGAAAGCGAAGCCGAACGCGAACGTACAAA
AAACATTCGCAAAGTCACCAAACTGACCTTCATGATCATTCTAACGTACG
GTTTAACGTGGGCACCATCCATCTTCTATTACATATTACTCAAAGTCGCG
CCGTCAATCTTCACGGAGGAATATAACACGTCACCGGCGGAGAGTTACGT
AACGTTCTTCATTAAGTTTATTACGTTTTTTGATGCGATTTTCACACCCA
TCATTTACTGTTACTTCCATAATGACTTTCGGAGGGAGTTTGATAAGTTT
TGGAGGAAAGTATTGAAGAAACAAGATGTGGCTGAGATTAAAGATGAGAA
TAGTAGTCACAGACCTCGCTCTTGCACTTCTTGGTAAGCTGTTTTGTTAT
CCCTTTCTACGCTGCCAAGAAATCAAAAATCGACAGCATTGAATCTAAGA
AATTCATTTGCGATGGTTTCCGATTCAGTTATATGATCACTTTCTATGGA
GCATGTATCAACGTCCTTCTCATCGGTGGAGATCGTTTGCTGGCTATCAG
GCTAATGACGTCGTACAAGCTAGTAGTGACTAGACGGCGTGCCATAATAG
CTACCATTAGCCTGTGGACTTATGTGTTGGTTTTATGTTTAATACCGTTC
GTACCACCAGAGTCTGAAAAGTTTTGCCGTTACAATCAACAGGATGAGTG
GACGACGTTCATGTTGTTTTTCAATACACTGTTACCGTACATATTTGTGA
TTGTCAGCTATATGTATATTACTGTCAAACTGGATGAGATACAACAGAAA
ACGCAAGCATGGGAGGTCTAGATGAAACATTCGCTGAAGCGATGGTGGTT
GTAATGTCATTAATGAGTGCAATCATTATCATTATAAATGCTGGATGTAT
TTACATCATCCAATGGTCTTCAGTTCTCCGTCAAAAAACGGCTAGTATCT
TTGTCTACAGTATATTGACGCTACATTTACTGCAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15756MSTRG.15756Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15756.1.p1MSTRG.15756.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15756.1.p1.exon3MSTRG.15756.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15756.1.p1.exon2MSTRG.15756.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15756.1.p1.exon1MSTRG.15756.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000142_pilongenomesc0000142_pilon:520549..524752 -