MSTRG.15519.3.p1 (mRNA) -

Overview
NameMSTRG.15519.3.p1
Unique NameMSTRG.15519.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000137_pilon:893157..895846+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15519.3.p1 ID=MSTRG.15519.3.p1|Name=MSTRG.15519.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2690bp|location=Sequence derived from alignment at sc0000137_pilon:893157..895846+ (Clytia hemisphaerica_ch_hm2_pilon)
CTCAAACATtgtaacaaaaatatcaaaacatctCGGGAAAGGTATTGGGA
TGAGTTTGTCTTTATAGTAGACATCAAAGTTCATCAAAAGAATaaccaga
tttttcaaaaatgattaataatttCATAGTAAAGTATGTAGAGATATGAT
TTAATTGTTGTTCAAAATAAGATAGGTGTTTTATTGATTTATCGGTAATC
TAAGAATCGTAATCGATCCGTCATTCTCTTCAAGGTATTACATTTAAAGT
ATATTTTATCCGTTTCTAGCAGATTTTCGATTTATTTTTTAGGTAAAAAG
AGGTTTAATTTCTGGTCAATGTCGTGTACTCTCATGTAGGTTTTATCACA
AGAATatcaaagatttaaaaagacACCTTGAGCGATCTCACAGTATGACG
TTGGCATCTCATAACAAATTGCCTCCGTCATTACTCAGCAGtgtcataaa
gaaaaataagGGTAAATCTCAtatgaaacatagaaaagtagAACTATGTA
GTATTAAGGGCTGTAAACACTATATGCAACCCCAAACAGATCTCACCcgt
catttaaaaaattgccACAATGGCATGACGAAGAAACAGTATTATGCAAA
AAGGTACTTACTTTGTTATATAAATTTCGGAATTTTCATCTTGCTATCAG
CTGCTGGCAACTTCAAGGCAATCAAAATAATCCAATTTGAATAAGCGAAA
GGTCTTCGCATTCCgctttttcaaaagtttatctAATCAAATTTGGGCTT
TTTTAAAGAATGTAGACATGTAACAGAATGtaatgtcaaaaaatttataa
gtAACCTAGGTAGCTGTAGGCATTACGCTTTTTTAGCTTTTATTTAAGGC
ATAATTTAGACCACGTTTTCTTATTCAGAAAACCGAGAATAGTCGACGAG
GACGGACCGTCTGAAAAACCGTTGATAAATGTGTCTTGTAACGTGTCATT
GATTAATGGTAAGGATTTCTGTTTCTACGCTTTCAATTATCAATTTAGGA
TTTTCACCTTCTTGACATTATTCTAAGAACAAACtgttattgaaaagaaa
acttgaaGTAACGTTAACTCCTTATCGACTTTGTTTGAGAGAAAAATTAC
TTGTGTTTTCACAGATTTAGGTATTTATCGTTGATTTCCCAGAAATTGCA
CGTTTAGTCTCACATTACCAAGGCTTAATGATAAACTTAATCAATCTTTC
CTAGATCTAAACGATCTTCCCTCATAAAGTCTTTTGTTTTGCTTTGTAGT
AGGTCTGATCAACTCAAAATCCTCAGGAAGAATCGGTTAAGTTTTATTaa
aagaaatcgTGAATTCATTTTGACTCTTTGTTTAAGCCTAGAAATTGAAC
GAAATAATAGGTGCCTTTGTTTCTGCTAATCGATTTGGCAGTAGAAAAGC
TTCAGTGTAAAGTCGCCCGTAGAAAagattggcctaacagaaaatgtgtA
ACACGATATACTTGAATGGCCTATAAAACATACAAATTATGATTTCATGC
CTAACAAATTACGAAAGTTCACTATAGTCAGAACCCTTAAATGCTTAACT
TTTTCTGAACACTAGATTCTGTCATCACTGCCATTGAAGATCAAGACGAC
ATACCTGCTGACTCAAGTCAAATGTATCACAATGTCGAAGGTAATCTTAC
TAGTTTTACTATATCTCACACTGTTACTTTTACTCtggtttcaaaaatat
tttgctttggCGAGAAAGTAACTGTAAAGAGTTTTTGTTCGGAGTTCCTT
GTATTTGTTTAGAGTAAAATGTAACACTTGATCTCAAAAGTTCTAAGACA
CATGTTTAGAGTTAACGAAACCTTCTGAATATCGGTGAACTATTACGAGG
GCGACCGTAAAAAAGGGGATCTAGAATTGTCCCTCCCCAGCTCAGTCAct
cccaccacgctactgactACTACCCTAACTATGCCATTATATGCTAGTTT
TAATTTGCATTAGTTTTTGACTGTTGAGCTTGAGCTAAAATTGCATGCTT
ATAAAAGAGTGTATGGATCCTCCAAGATCTTTTGGACCTTTTATTGCATG
TTTTAAACATGGATACGAAGTGTGGAAgaattaaattttctatttgtttG
GATTTAGATTTTTCGGATTGCGAACGAAGTGATCTCCTAGATTCGGATTG
TACACTTTCGCCGTTTTACCCTCCCAGCGAATATGAAGGTAAGCTGTAAA
TCACAATTCATCATTGATTTGAAACAACAAGTGTTGGTGGTTTAAGGGGT
AACCTTGAATGATCAAGCAGTGTTAGCAGTACTCATTTTCAACTAAGTGT
CGTTATCGAGGAAACGATAACAACACTTAGTTGAAAAATGTGTAGTACTA
TgctattttcttataaaaatcgtgTACATCATCAAATAGTTTTTATTCTG
CACtttttttGtatctgcaaaaaaaaatcgaaaaaataatcTTATCtttt
ggtttgagtgatttaaaattattttaacatcgttttatttatttttttag
aaattataCAGTCGGATTCGGAGGACCACGACAGCTACCTAACGAAGAGA
TATCTTTGAACACTGAGTGgcatcatagtcattataaaaaaccccggtcg
ggcaatgtattgttttagctttttgtttaaatttcttttgttataaacaa
aattaacacaagttgcgatttgcatactttttgatcacgt

Coding sequence (CDS) from alignment at sc0000137_pilon:893157..895846+

>MSTRG.15519.3.p1 ID=MSTRG.15519.3.p1|Name=MSTRG.15519.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2520bp|location=Sequence derived from alignment at sc0000137_pilon:893157..895846+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACGTTGGCATCTCATAACAAATTGCCTCCGTCATTACTCAGCAGtgt
cataaagaaaaataagGGTAAATCTCAtatgaaacatagaaaagtagAAC
TATGTAGTATTAAGGGCTGTAAACACTATATGCAACCCCAAACAGATCTC
ACCcgtcatttaaaaaattgccACAATGGCATGACGAAGAAACAGTATTA
TGCAAAAAGAAAACCGAGAATAGTCGACGAGGACGGACCGTCTGAAAAAC
CGTTGATAAATGTGTCTTGTAACGTGTCATTGATTAATGATTCTGTCATC
ACTGCCATTGAAGATCAAGACGACATACCTGCTGACTCAAGTCAAATGTA
TCACAATGTCGAAGATTTTTCGGATTGCGAACGAAGTGATCTCCTAGATT
CGGATTGTACACTTTCGCCGTTTTACCCTCCCAGCGAATATGAAGaaatt
ataCAGTCGGATTCGGAGGACCACGACAGCTACCTAACGAAGAGATATCT
TTGAATGACGTTGGCATCTCATAACAAATTGCCTCCGTCATTACTCAGCA
GtgtcataaagaaaaataagGGTAAATCTCAtatgaaacatagaaaagta
gAACTATGTAGTATTAAGGGCTGTAAACACTATATGCAACCCCAAACAGA
TCTCACCcgtcatttaaaaaattgccACAATGGCATGACGAAGAAACAGT
ATTATGCAAAAAGAAAACCGAGAATAGTCGACGAGGACGGACCGTCTGAA
AAACCGTTGATAAATGTGTCTTGTAACGTGTCATTGATTAATGATTCTGT
CATCACTGCCATTGAAGATCAAGACGACATACCTGCTGACTCAAGTCAAA
TGTATCACAATGTCGAAGATTTTTCGGATTGCGAACGAAGTGATCTCCTA
GATTCGGATTGTACACTTTCGCCGTTTTACCCTCCCAGCGAATATGAAGa
aattataCAGTCGGATTCGGAGGACCACGACAGCTACCTAACGAAGAGAT
ATCTTTGAATGACGTTGGCATCTCATAACAAATTGCCTCCGTCATTACTC
AGCAGtgtcataaagaaaaataagGGTAAATCTCAtatgaaacatagaaa
agtagAACTATGTAGTATTAAGGGCTGTAAACACTATATGCAACCCCAAA
CAGATCTCACCcgtcatttaaaaaattgccACAATGGCATGACGAAGAAA
CAGTATTATGCAAAAAGAAAACCGAGAATAGTCGACGAGGACGGACCGTC
TGAAAAACCGTTGATAAATGTGTCTTGTAACGTGTCATTGATTAATGATT
CTGTCATCACTGCCATTGAAGATCAAGACGACATACCTGCTGACTCAAGT
CAAATGTATCACAATGTCGAAGATTTTTCGGATTGCGAACGAAGTGATCT
CCTAGATTCGGATTGTACACTTTCGCCGTTTTACCCTCCCAGCGAATATG
AAGaaattataCAGTCGGATTCGGAGGACCACGACAGCTACCTAACGAAG
AGATATCTTTGAATGACGTTGGCATCTCATAACAAATTGCCTCCGTCATT
ACTCAGCAGtgtcataaagaaaaataagGGTAAATCTCAtatgaaacata
gaaaagtagAACTATGTAGTATTAAGGGCTGTAAACACTATATGCAACCC
CAAACAGATCTCACCcgtcatttaaaaaattgccACAATGGCATGACGAA
GAAACAGTATTATGCAAAAAGAAAACCGAGAATAGTCGACGAGGACGGAC
CGTCTGAAAAACCGTTGATAAATGTGTCTTGTAACGTGTCATTGATTAAT
GATTCTGTCATCACTGCCATTGAAGATCAAGACGACATACCTGCTGACTC
AAGTCAAATGTATCACAATGTCGAAGATTTTTCGGATTGCGAACGAAGTG
ATCTCCTAGATTCGGATTGTACACTTTCGCCGTTTTACCCTCCCAGCGAA
TATGAAGaaattataCAGTCGGATTCGGAGGACCACGACAGCTACCTAAC
GAAGAGATATCTTTGAATGACGTTGGCATCTCATAACAAATTGCCTCCGT
CATTACTCAGCAGtgtcataaagaaaaataagGGTAAATCTCAtatgaaa
catagaaaagtagAACTATGTAGTATTAAGGGCTGTAAACACTATATGCA
ACCCCAAACAGATCTCACCcgtcatttaaaaaattgccACAATGGCATGA
CGAAGAAACAGTATTATGCAAAAAGAAAACCGAGAATAGTCGACGAGGAC
GGACCGTCTGAAAAACCGTTGATAAATGTGTCTTGTAACGTGTCATTGAT
TAATGATTCTGTCATCACTGCCATTGAAGATCAAGACGACATACCTGCTG
ACTCAAGTCAAATGTATCACAATGTCGAAGATTTTTCGGATTGCGAACGA
AGTGATCTCCTAGATTCGGATTGTACACTTTCGCCGTTTTACCCTCCCAG
CGAATATGAAGaaattataCAGTCGGATTCGGAGGACCACGACAGCTACC
TAACGAAGAGATATCTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15519MSTRG.15519Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15519.3.p1MSTRG.15519.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15519.3.p1.exon1MSTRG.15519.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15519.3.p1.exon2MSTRG.15519.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15519.3.p1.exon3MSTRG.15519.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15519.3.p1.exon4MSTRG.15519.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15519.3.p1.exon5MSTRG.15519.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15519.3.p1.exon6MSTRG.15519.3.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137_pilongenomesc0000137_pilon:893157..895846 +