MSTRG.15513.1.p2 (mRNA) -

Overview
NameMSTRG.15513.1.p2
Unique NameMSTRG.15513.1.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000137_pilon:867614..874551+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15513.1.p2 ID=MSTRG.15513.1.p2|Name=MSTRG.15513.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6938bp|location=Sequence derived from alignment at sc0000137_pilon:867614..874551+ (Clytia hemisphaerica_ch_hm2_pilon)
tttAATCAGAGAGCAATTTTGTGATCGAAATTTTAGGGTTATATTCTGTT
ATAAAttgaaaagtaacaaaatttaatttatatgGATTGTCTCTTTCAGT
TTACATTCATTGAGAATGCTTCTAAGAGAAAGCAGAGTGAGAAgggaaaa
ttaaaatcaattcgAAATAAGGTAAGAAAAAGACCTTTCCTGAAGCCCCC
TTTAGAGTGACTTTTGATTAAgataaattttgattgattgcACATATGAC
TggttgagtttttttttggtATAGTGAGAGATTCCTGAAAACTTTATTTC
ATTTGGTtgactagatcaaaagttatttcaCTTTCTGCATTATTATTTCT
TACTTTGCAAGGCGTCTGATCACTTTATATACTTTGCAGCTTTTTCATGT
AAAcatgatttttcaaatctttaaatTAATAGTAAAGCAATgagaatttc
ttttaaatttgaaatttttacaaatttttactttaatattaatacctgaa
attaaagaaaaaagtttgaaaaattcttagttTGAACTTTGAGATATCAT
TAAATTTGATCACGTGATAGATTTCAGGAAAGGTAGGCAAACCCAAAGGT
AGGTAAACCTTATCTCAAAATAATCTGCAGTTTATGTCatgatgataaaa
ttttagagtcaACCAACGAAAAATTATAGCATATCTTATAGCATGATATT
TTATCACAGCTTGATTCAAAAGTTGAAACcttttttatccccactgtaga
aattttttaagtaaggcaagtacttttttattttctggtttacggacatt
tagagatgatcttttggaccggaggatggaaaaaaaataaaaataaaatt
gtcgttttcaaactttaatgttgTGTTGGAAAGaataaaatgtgttttga
gGAAACTTGCATACaccagaaaatcaaagaaagtttttcagctAGAAAAT
TTTGTTGAGCGCCATTGGATGAGGCATATTGGGAAAAAGAGATTGCTGTA
TCCTATTTTCTTCCTTTCCTGCTCTtataaaatgaagttttctaaaaaaa
atccatttcatGGCAGATCAAACAGAGTCGGAagtgcaaaaataaataaa
atttctgtgaatttcaattctatttttattttatttttgcaaaataatcg
tcggcgattccgtaaaccagaaaataaaaaagtaattgcctaagGGTAAC
TATTTTAATCCCAGTTCATGTAAAGTTAAAAGAATTTAGTATGTAGTAAA
GAAAAGGAATTCTGAATTTAAAAGCGTCATCATGAATTTGATTATAATTA
GTACACTGTTTGATCTAGCAGGTCGGACAGTTGGGTAGAGTGACTCGGAC
TCCAATCGTTGTTTTAGCTTACACTGCAGATGgcaatatcaaaagttatg
gtgaGATTTATCTTAGTTTTCTTGTGTATTTAGCGAAGAGATATAAACAC
TAGAAAGAAATTTAGTCAAATTGTAAATGAGCTGAAATTagtattataaa
aaacacttgCCAATCGTGCCAATAAGGTTCCACCTAAAACCTACTTCCAA
GCAATAAGGAAGGGAATGACTCAAAAGGTTTCAGTTCGAATTCCGACTCG
ATCAGAAGGTATGGGACCTAGAGAAAAACCCTGTAAAACAATattaaaaa
tttcacatttcACATGAGGAAAGGCAAGACAGAAAATTGACTGTCTAAAC
TTGGGCTTATTAAAGCCTTTCCCAtccaaaattatctttccaaggAGGAA
AGAtcttttattgtattttgaatTATACCGTTTTTCCTTAGAAATCAATG
TATTACTGTATGCGGCACTTTATTTTTTAAGGTTGTTGATATTTAGTCAA
GATAAGtcattgtagaaaaaaaaagaaaaacgtgaagggtatttttgtta
attatgtgtatttacggttatttatatttatggttgttgatattttatat
aATGGCTTTTTCAAGGTTCATCAAAAGGAATGAAGGAATTTGCTCAAGAC
CCAGcaataattcaaaaattcaaagattCTCTTCCAAATAACGCAGGTAT
AACTTATACAGATAATTTACTAAACGgtcatagcttcagccaggtttcta
gctccccccaacaaagtaaggtccccccaacaatttagctccccccaaaa
aattgtcttgtgctaggtcccctaaaACTTCAGGTCCCAAGATAAACTAA
AACACCCCcgtagagagaagtcaataaaaaatatatctaGTACAgcactg
ataaatgaaaactaaattttacttgttttaatatttatgtttacaaatct
tttgctttttatatttgatttaatagtaagataagagatattttgaattt
agctgaacagcccccagagtctcagtcagatcatctaggctccccccaac
aatctaggtccccccaaatattttggtaattttagcccccaggctcttta
aaggccaaaatatttcttagcccccccccaaaaataagggggggggctga
acctatgacggttcccgtcgtcgcaaacgttGGTTAAGGTTTTGCTTGCC
CATCGAAAGCCCTTAAACTATAGGCGAGGGATGGGTTAAGGTAAGATGAA
agcaaagagaaaaacaaaacaattctcTTTGTATTTTGTGATATGTATGC
CAATTAATTGAAAAACTAAAggatttgtataaaaaataacataacGATCT
AATTTAAATTACGAAGGGTGCCCTTATACCTAGCAAGAAGCCTCAATTTT
CAAGGAGAGGGGCTCATTGTTCGCGAGTCATGCCGTCCAATATGTTAACT
TAACGTGTTGATAACTTAAGACTGGTGAAATTACTCCCAATCCAATCCAA
CCCAACATGCATTTGATCCAACTTAGAATGATTTTGCATGAAATGCTGGA
TTCATTTGCACTGGCCTTTAGCGTGTTCGTAAAAATATGCGAAATCGTGC
AACGAAAAGAGTGCCACACCCctatatttgaaactttgtgacgtcgtggc
acttttttcataaagttgacgtcagaactttctTTCGTTTTAAAATGGGA
GTGTAGGGGAATCTTCTAATGTgcgttttcttttttcccttttcaAACTT
AACTCGAGACTTTTCATCTCCAATTAAATAtattgaagatgaaaagtttA
CTCCCTTCAAGAAACGCTGAGCTTGCAAAGAGATTGCAGTTATTCAACCA
AcgatcaaaacaaaagatagcgCGCGGCGTAACTTTAGTTGTTCGATTCA
ACACCGCAATTTCTTCactttaataaaacaatttaatGGCCAGAGAGTTT
ACAATGCTTTGACTGCAAAGTCTCGATTAAGAATTGGAACGAATTGTCTG
CGTTTTGAATGGAGCTTTCGAATAACTTCAATCTCTATGCAAGCTCACCG
TTTTGGAAATTATAATGTCAGATTGGCTTTGACTGGGCTAGTGTGACAGA
CATTTTTCCAGAACTATAAAGGTTCATCCTTATCAGAGCTCATTTCGTTT
TGGTCAATCGAGAAAAAATGTTACCatcagtttgtttttatttacatttt
agcCTTTGAAGAAGAATCTTCAgagagtgaaagtgaaagtgaagatGAAG
AGGAAACTCCTGCAAAGAAACAAAAGCTTACTTTTGATGTTGATTGGGAA
GATAATCTAAAGGTTATCCCGAAACGTGACCTCCTGTGTGATATTACTTA
TCGATCAACAGGTTAGTTCCTATGCTTTAAAAAGTATCTATTCATTTACC
TTATACCGTAGAAAACCCTTAAAAGTATGGTCAGTACTTAGAATTATAGG
TAGACAAACTTAGATTTTAAATACTTTAGGCTTCACAAAACGAACGATGA
AGTGGGTCGAACAGAATAAACCCAGTTGGTGGCCACGTCGAATATTGTTT
CGATCTCCTCATGGTAAAAGTAAAATTCCCGTGGCTGAAATGGACGATAT
CCTTCGATCATTCCATGAGCATAAAGTCATTAAAGCTGTCGTAAGTTTTA
TTCCCGTTTTGTGGAAAACATCAATTTAACAATTTGGAGGATTGTATGTA
CGTCAACTCTACGTCGATCTAGTAATTTCGTGATACATCCATAATTCGCA
TAGCTGCTTCAAAGTAACATAATCTTATATTGTTTTAGGAAAAACTGTGC
TCTGATGATGTAGACGTTTTCTTTCcaactttttccaaaatggaAGAACA
TTTGAATTTATTCCTGAAGAAGGCTTCCATCATCACGGAGTGGTTGAAGA
GAAATAGAAAGATCCAAAGAGTTGCAATGGCAGATATCGAATACAGGTGA
TCCTTTTATCTAAGttcaatttcatttatttttttgtatttgtgtTTGAA
AGCCGCTCTAAAGAAATGCTGCCGCGATAATTAGGGGACCCATGGTTTGG
TGGTACTTCCATGGTGTACATTGAAACTTACTTTAAGTGACCTACGggta
aaagttcaaaaacttgTCATGATGATATTTGTTGCCCTGTTAGTAGCTCT
ATGCTCTTAGTAGCTTTTTACTAGTAAATATTCTATTTTGaataatataa
aattttattttgtcacTAGATGCCGGTATCTAACAACAAAGTTTGGCACG
AGAAAGGAGCCCATCCTCTTTGGGTCAATACATCGTTGAACGCCGCATta
cgaaaaatttttcaaaattctatcgTTGGCATATGCTGTAAcgagaaaaa
atgatttaaataacTATGTAAGAATTGAAATTTGAATCGatttttgatat
gaatatagatgaatatatgtatatatatctacgtttgttattatatgtta
attatatTTCATTCTAAGGGAACATCCGTCCttctttgaaaattattata
aattttatCAATCTAGATTATGTATGTTTTTGGCTTTTATGCATTACCAC
TTTATTTCTAGATATGTGACGGAATAGATGATGTATCGCCGAAGAAGTTT
CAGTCATGGCTTAACGTCAAAGACATTAACAATTTGGAAGCATCACTTCT
TACAAATGCATTTGAATGTAACGGTAATAGTTATAAAATTTCTTAAGTTA
TGTGACTTTTCGTAACTTTCGCAATGTTGCGAAAGTCCAGTGGAGTTAGA
ACCCTCGTATTTTAATTGGTTTAAAGATATATAGAAAACAATTATTCTAA
CTTTAATCACTTTTGTAAAAACTCTTCATCGCATGAAAAGACAATTGATT
TTTGATAGATGAAAGACtaactttttaaacaaaaagtttatatttatTTC
ACTTCATAACACTGTGAGAAAGGGTTATGTAGGTGTAACCTGACTCTCTC
TCCATCCGTATAACAGAAAAGAGTTAGACTCTGAACCACTCTTTGTTTGT
CTCGGAGAGACATAATGAAATAATATGAAGTAATACCCTccccccccATT
TTATAAAGCTGACTTGTTCTGATGACTGATGACTGGGTTCCAATAAATCT
TCATCTTGATTCAATTCAATCGTAGGTATCAACTGATAAACTTATCTTTT
GACTCGACTTGACAAAACAGAAACTTATTGAGACACGACTGTACCGTACG
AAATTGACTGAACACAATATTGGTTTATGTCTTATTTATGCTCGCAAAAT
CCTAACaggtttcatttatattttttgtcaaaatttttacTCTTGAATCA
GcctttttttacaaatattaaCAAAGTCCAATTTCAAGTGTGTATTCTAA
CATTTCTGGCTATCTGTTCTTGATGAAAACCAACGCATCAACTTTTTTAa
gtcttgaaataattttcaatgaGAATAGAAATGTATTTAACGGTGATTCT
TGTTACTTCTATTCCAACTGTTATAGCAATGGTATCCTTGATTGGGCTGG
TCGTAGGGCTCAATAAAAATTTGGCAGTTCAAGACGGTGAAAGCGTGTAC
CGACTGACAAGGCAAGAAGACATTCCATGCGACATTGCCATTTTATGCGG
AAATGATCAATACGTGTACATGGCTGATGTGGATGAATTTGACGAGAAAA
AATGTCGAAGTCATAATATGTTTTGTTTCGATGATAGTGAAGAGGACGTC
ATTGTGTGCCCAAATTGCCTACTCACCTACCACAACACGTGTGTGCGTTG
GAATGATGATTGTGGGTGTACTAAAATCCCTGAAATCAAATCGAGGTACA
GTATAATCATCCAATAGAGGAAACTTAAAAAGGCAGACATCTCTGATTAG
GACGTAATGGTATTTTCCGCTTGCTAGTCAAAACCTCATcagaaactttt
caaaatagGTACACTTAATTAGATAAGGTTTCTACATGGAATTTTGTTGG
TCAGAAGCATACTTTTTCCTCTCAATTTATCATACACAACAGACATAAAC
TGgttaaaaaaggtcaaaaataaGAGTGTTTTATCTTATTACAGTAGTTG
ACGCtcctaattcgatcttcaagggaaattggaaaaaaaaatgaattaat
ttaCTTGAATCCTAAActagaaagttttaaaagtttatgCCCTTAAACTA
TCTACTTTCGTCTTAGAATAACTGCAATGCTGGATAATCAAGTTATCAAT
ACCTTTATGTGTGAGATTTACAAAAGAACAAATCAACTCACGGTGAGATA
TTATATTACTAGTCCTACGCTATATACGCTTAACAATCGGGCTTTGTGGT
TTCATATACTATCAGTCGAATGTAAAACATGATCTTAGTCGCTCATGTTT
ACTTGATGcggatttgaaatatttttttaaaaatagataaacttattttt
cagaaaaaggcaTCTAATATGTTAAATGGGCATCAAAAATCTGCAAGGAG
TGAACTGATCCATGCCAGGGTAAATGAAGGAAGATGTGGAGTATTGACAA
AGatgaatttgttttcaaaaacaataccTGACCAAGTCGTAAGCGAAAAC
TATTTTACATTATATACAGTGTACCCTTAAAAAGTGTA

Coding sequence (CDS) from alignment at sc0000137_pilon:867614..874551+

>MSTRG.15513.1.p2 ID=MSTRG.15513.1.p2|Name=MSTRG.15513.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1710bp|location=Sequence derived from alignment at sc0000137_pilon:867614..874551+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTATCCTTGATTGGGCTGGTCGTAGGGCTCAATAAAAATTTGGCAGT
TCAAGACGGTGAAAGCGTGTACCGACTGACAAGGCAAGAAGACATTCCAT
GCGACATTGCCATTTTATGCGGAAATGATCAATACGTGTACATGGCTGAT
GTGGATGAATTTGACGAGAAAAAATGTCGAAGTCATAATATGTTTTGTTT
CGATGATAGTGAAGAGGACGTCATTGTGTGCCCAAATTGCCTACTCACCT
ACCACAACACGTGTGTGCGTTGGAATGATGATTGTGGGTGTACTAAAATC
CCTGAAATCAAATCGAGAATAACTGCAATGCTGGATAATCAAGTTATCAA
TACCTTTATGTGTGAGATTTACAAAAGAACAAATCAACTCACGaaaaagg
caTCTAATATGTTAAATGGGCATCAAAAATCTGCAAGGAGTGAACTGATC
CATGCCAGGGTAAATGAAGGAAGATGTGGAGTATTGACAAAGatgaattt
gttttcaaaaacaataccTGACCAAGTCGTAAGCGAAAACTATTTTACAT
TATATACAGTGTACCCTTAAATGGTATCCTTGATTGGGCTGGTCGTAGGG
CTCAATAAAAATTTGGCAGTTCAAGACGGTGAAAGCGTGTACCGACTGAC
AAGGCAAGAAGACATTCCATGCGACATTGCCATTTTATGCGGAAATGATC
AATACGTGTACATGGCTGATGTGGATGAATTTGACGAGAAAAAATGTCGA
AGTCATAATATGTTTTGTTTCGATGATAGTGAAGAGGACGTCATTGTGTG
CCCAAATTGCCTACTCACCTACCACAACACGTGTGTGCGTTGGAATGATG
ATTGTGGGTGTACTAAAATCCCTGAAATCAAATCGAGAATAACTGCAATG
CTGGATAATCAAGTTATCAATACCTTTATGTGTGAGATTTACAAAAGAAC
AAATCAACTCACGaaaaaggcaTCTAATATGTTAAATGGGCATCAAAAAT
CTGCAAGGAGTGAACTGATCCATGCCAGGGTAAATGAAGGAAGATGTGGA
GTATTGACAAAGatgaatttgttttcaaaaacaataccTGACCAAGTCGT
AAGCGAAAACTATTTTACATTATATACAGTGTACCCTTAAATGGTATCCT
TGATTGGGCTGGTCGTAGGGCTCAATAAAAATTTGGCAGTTCAAGACGGT
GAAAGCGTGTACCGACTGACAAGGCAAGAAGACATTCCATGCGACATTGC
CATTTTATGCGGAAATGATCAATACGTGTACATGGCTGATGTGGATGAAT
TTGACGAGAAAAAATGTCGAAGTCATAATATGTTTTGTTTCGATGATAGT
GAAGAGGACGTCATTGTGTGCCCAAATTGCCTACTCACCTACCACAACAC
GTGTGTGCGTTGGAATGATGATTGTGGGTGTACTAAAATCCCTGAAATCA
AATCGAGAATAACTGCAATGCTGGATAATCAAGTTATCAATACCTTTATG
TGTGAGATTTACAAAAGAACAAATCAACTCACGaaaaaggcaTCTAATAT
GTTAAATGGGCATCAAAAATCTGCAAGGAGTGAACTGATCCATGCCAGGG
TAAATGAAGGAAGATGTGGAGTATTGACAAAGatgaatttgttttcaaaa
acaataccTGACCAAGTCGTAAGCGAAAACTATTTTACATTATATACAGT
GTACCCTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15513MSTRG.15513Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15513.1.p2.exon1MSTRG.15513.1.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15513.1.p2.exon2MSTRG.15513.1.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15513.1.p2.exon3MSTRG.15513.1.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15513.1.p2.exon4MSTRG.15513.1.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15513.1.p2.exon5MSTRG.15513.1.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15513.1.p2.exon6MSTRG.15513.1.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15513.1.p2.exon7MSTRG.15513.1.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15513.1.p2.exon8MSTRG.15513.1.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15513.1.p2.exon9MSTRG.15513.1.p2.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15513.1.p2.exon10MSTRG.15513.1.p2.exon10Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15513.1.p2.exon11MSTRG.15513.1.p2.exon11Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15513.1.p2MSTRG.15513.1.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137_pilongenomesc0000137_pilon:867614..874551 +