MSTRG.15460.3.p1 (mRNA) -

Overview
NameMSTRG.15460.3.p1
Unique NameMSTRG.15460.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000136_pilon:739672..746335+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15460.3.p1 ID=MSTRG.15460.3.p1|Name=MSTRG.15460.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6664bp|location=Sequence derived from alignment at sc0000136_pilon:739672..746335+ (Clytia hemisphaerica_ch_hm2_pilon)
Cgtgatgtttttgaaaacaaatttcaaatgtttcatctgaaatattttga
atgaaatatattaacataaaattatcaatttataaaagaaattcattaat
tgtttatttttttaaatttttggttttgttgtatatggtaaaatattaag
gtaaatatttatttttcgagGCCTTCAGTATAATTAATTCTCCCCTAATA
ATTTATTACGACATTTTTGGGATTTTGCTAGAATTTTAAGGGATATTTTG
AGTATAATTAACATATCCCTTAAAACGTAGCAATACacgatttcttttat
aagaacaattttataaatttttaagtaaaaaaactAAGCGTATTGaaaga
acatcataagaacatttaagcctgaaaattaaaaaaaattaagaacagcc
cagcctgatCCAAATtgtattggttcttataaaaaaagcgtgtaagtaaa
tactacacccctttcttactcacagacccagtaggattttttcagtcagt
gggcATAAAGATAACGAACTGAATCTTGACGGGGATTGACAtacccatat
tttttatggctggggatttcaattcttttattttcaagtcagaaaattca
gtggggatgggaaaaatagcataatatgtTGCAATGTGGATTGGTTtata
tgattattttcagtgaggaCAAAAATTGTATGATAATTTTTCACCggaga
caatattttggccaatttttccattgggaaggggttccagtgggtctgtg
agaagggggtgtaatacTGTCTGAACTGCCAAATCCCTTTCGTCAGGGAG
TCGTGAGGGTGAATTAAGGTACCCTAGCTAGTTCAAAGATTTTCGAGATC
GATTGGTATacttttgtcaaattttagTTCTAGATTGTTTTTACAAATGC
GTAGTGTTAGATTCCATATGCATTGCACtaatacatccctgtctcaatta
AGTAAGAAATCTTTATTCAAAGGGGAGGGATAAGATAAAGTGTTAATAAC
AAATTACTGATCTAATTAGGTACTATTACAGCTGTAATGAGGAGTCCTTA
ATATGAGTCTTTTCCCAGTGTAATTTGCAATTAAGCTGGTATTTAAGGgt
taaacctttttttataagaacaaactatattagaacataaggcttcgacg
gccaacaagttaagaacatttaaaatctttatgaactcaaaaacactcga
tttcgtaggaaaataggtaaaaatggtcaaaacatggggaaataagaaca
tgttgagaacattttttggctCGAAACTCAACAAGTTAaggacatccgaa
ggcttcaaaaggaAGGGGGTCCCTAGTTATGTTAAATGAGGCATATATAC
CAGATTACATAActatacacacttttttataagaattgtgTTCTTTCATT
TCATGATGGGTATTATTAACTTTTCTGGGAAAACCACCCTAAAATACTCT
TACAGTATAtacttaggttaggatcctaccCAGTCTAAATCTAGCATGTA
GTACCTCGAGAAAAGATTTGCGGATTATTGGAAATTTACAGGTGAAATAT
GCTGAAAAAACATTCTTATGTTCAGTTTGCCAAATTCCACGATGGtgtta
ttcttagcatattcttaatttttttaccaatttcatcatgaatattctta
taaagtatatttttataaagaaataaGCGTGTATTCACAAATAATTTTCG
ATTTGAAATTTGCCAGGGCTGTAAGCAAATGTAACCCGGAAATCTAATTA
CTTATTGAGAAAAACGAACTATTTGCCAAAAACCAAAACCAAGCATTTAA
TTCAGTTTATGAATCAGAAAACATTGTCATTGTGTCTGCATTCGATTATT
TTTCCAAACAACGATTGTTTAgagaaacaaaaaatgttttgaaagtttga
ttccCAAACCATTTGTAATCTGGAAAAAAGAATCAATGATGCACCTATTG
AAACACCTTTactcattttcagcatttctcgttcgaaaaaaattaaggaa
ataaaaacattcgaaacaaagcaaactttttctttgatttaatgtttcta
tctttaaatttctttttacattttcacggcttattaaatttGCTCAATGG
ACCGTTTTATGGTTCATTGGTTATGCcattaaaatattatttgatcATCT
TACCTTCTGTATAATACCTGTTTTTAACGAGATCCATTCGAATTTCTtca
ctttcaaaaaagtttaatttcttaATCGCTTTGTATCTTCTTCGAGCCGT
CTTGACGAATCTGGTATATTCGATTCCAAGGTATTTGCTcatcatatttt
gatatttttacttGAGAATATTTCAGATTTCATTTGCTCACAATACTGGT
AGATTATGAATTGGAGATGTATCGGAATAAAGCTTGGTTTCCaatatctt
ttttaatttcaaggaaaaaatcttttgttattGGATCGGCCATTTGTTCT
GATTCAATATCTTCGAAAACATCACAATAGATCTCATACATTGCCTGAAA
TGTATCAAAGCTGAAATCAGGGTATTGGTCATGATAATCTAGTAAAAGAT
AGAAAGATTATTActaagaaaacatttttaataatgatattctcttttat
tttctttacagATGGATAAACGATTTTTGATCTTACTGGTCGCCTTCGTG
GCATACACATCCGCTAAATCTGTTAGCCGTAAGTatcttattttattcat
tttcaaatacagttgacgttctactattcgatgttctactattcgatagg
cttccttattcgatgaaatttatagtccccgtcaacaagaaattatcata
aacgacgctcccttattcaataagctcccttattcgatgaaaatccaagt
CCCCttcaagatcgaattagagagcgtcaactgtacctAAATGCAAGAAA
TTCCTCTTCTTATTCTTGCTTTATTCCCaatctaaaaatgttttggATTT
AGCGCGTATCGAAAGACAACAATAAATCCCACAAAGTCGTGTACAAATTC
GGATATTTGCAGCGAAGAAGATATTGTACTTTGATGCAATATTTTAAAGT
TGCTTTTACGATATTACGATAAGAATTACGATATTCATGGCTATTTTGCG
CGCATTTCACAACATTTTTGGATACAGGATTTATATTACGCacgaaaaaa
tttgaatataattcgAAAGGACTCGAAAACTTAAACTAATCTTACATATC
TCCGGAGAAACCTTCCTTACTCAATTccaaaaaatccaaactttGTTATA
TGACAGTCATTACAACTTTGTGTGAAAGAGAAAGacttttgttccttttt
tcacaaaaattattGAAACTGCATGATGAGTCTATATAATATCCATTTGA
CATAATTTATCTAacacatatatatatatttatagCATGTTAGATATTAT
ATTGTTGCATGGTTAAATGCACCTCAAAATCTGATTCTTTTGGCTTTAAA
CTGATAGAAAACTATATACCTATACACAATCATTTTATACAAAAACATGt
acagcaaaaatttcaaaacaatctgCTTTTAACCAGGAACAAAATGGTGA
CTCTGGTTCGATTTCATTGGATCATCATTTCATAGTTATAAACAAGCAAC
TTGCTGAAACAGGATGTGCCGCCACAACTTCAAAAATACTTACTaaagtt
tcaatattttttttggaaaagagaattaaaaaaagagctTTACTCTTTCA
CACCTAATGGACATAATTTATTGTTCCTTTTAGGTGTGAAGAAATCTGCT
AACCCATGTGGCTGCACTCCTGCTCCAGCTTGTtgtgccccaccaccacc
tccaccaccagccccaatgtgtgcatgtgccccagcaccagccccatgtg
GTTGTGCCGGAGGAGCCGGTGCTgccccaccaatgccaggacccccagga
ccgggaggaccacccggagccccaggaggcccaggagCTATGGGACCCGC
aggacctccaggacccccaggagccggaggatgcggaggaccacctggac
caccaggaccaccaggacctccaggagcaccagccccacctccaccacca
ccacctccaatctgtctccaccaTTGTATGAAGATCtgcccagtcagtgc
ccctgcctgtgccccaccaccaccagcttgtgccccaccaccatgcccag
ctccaccaccatgtgccgctccaccatgtgccccaccaccaccatgccct
gcaccttgtccaccacctatgccatgtgctgctccaccatgcccaccacc
tatgccatgtccaccaccatgtccaccaccttgcccaccaccacctccac
caccaatgtgcacctgtgggccaccaccaTGCTCCTGTGGAAAATAGAGT
GGATAATAAAACGACGCATTATTGTTAATAGATGTTAAATGAGTCATTTA
AGCAAATTACTTTGCttgatttcaatttcaacaaaatcaatCTCCAGAAG
ATACTTTCCTTGAGGAATGAATATTGAGATCTCAACTTTTACGTTAAGAA
ATTTCCTCATAAGATTTTTCTTATGTATAATTTCAATAACTATATTATGA
cacatatttttataaataaaagaaactctagaaaattataattgaattga
aaatattttccgcATTTACTTAACGATCCTTTCCAATCAATTTCTTGACG
AAGGTCTGAATTTCTAACTCTCTGAATAAACAATACATTTTTCCATAGTT
GGGATATTTAGGGTGCATTAAAGTCTgatcacgataagtgtgcactcttt
tttcttttacatataaattttgaaggaattcttcaatctttataaatttg
gtatcattggaaagatattagcgagtggaacaatttgaaataaaaaaatc
tttaaaaaaattctaaaaatgaagatgaaaatgaagaagaaaaaaataaa
gatctggtagaaaagtgctataactttcattttaactggagagattcttt
gatcttaggaggtcatcactgacCAATTTTACGCTGAAAGATTGCCAGAT
TTAAAGTCATATGCAATCATACAACATatttggatttttcaatttgcaag
ttttaaattttatttataaattttgaactttaGAAAAAGGCATGTTAGTT
TTTCTccccaatagaccttttcataaattacatcatgaacatcacttgcc
tagttttgaaattattgccgtGGTGATTAAGTCCCAGCGGAtttttttAa
cgtgcaaattacggtattttctcctttgttacgagtgattaatcgttaat
tgcacgacaaaacatacgattccgaggtaatcgtcagtaaacattcgaaa
acctcctttttttcttctgtttaaaaagaaaacattgcagtttaattttt
ctttgttttcaattaaaagaagctattgtaacgtaaaatatctttgttcc
tttttatattgaagaaaaaaaatgtctttgttttttattatatagtaaaa
aaaagtctctgacacaggacttgggagagaaaagaataaggggacaaaag
tgtccccccgccgaagagtgcaaaaagtggtaatagtgcaattaacgatt
aattgcacccctctaaaccaatcagattcgagtaattttgcacggctgac
gattaccatagtaattgtttgaatacgaagcaagtgatgttcgtgacgta
atttataaaaaggtctattaaataGAAATTGTTTTTACTATTATATGAGG
CATGAAAAGTAATGAACAATGCACGAGGTATGTAAAATCGAATTCGGTGA
TCTACGCTCCTTATTAAATACtctcaaaaaactttaaacaaaaattgaaa
caaaaattgaaaaaaaaaagatttagcatcaaatattttgattttttaat
tttctacttttcatcGTAGATGGAGATAAACGATCACCCTGTTCGTGTTC
AGCACCGCCATGTTCATGCCAAGAACTCCCAATGCAAACCATCACTATCC
CCATGGCTGCCCCATGTGCACCACCAGCCTGTGCCCCACCACCACCAGCT
TGTGCCCCAGCATGTATGCCAGCATGTGCACCAGGATGTGGTGCCGGTGG
AGCCGGAGCCgctccaccaccaccaccaccaccaccagtcccaggaccac
caggatctatgggaccagtcggaccaccaggaggaccaggaggcccagga
ccagctggacctccaggaccaccaggaaccccaggatcaggaggtccacc
aggaccaccaggaccaccaggacctccaggagccccagctccaccagctc
caccaccaccaccagtCTGCTTACATCACTGCATGAAAATCTGTCCAGCT
CCAGcacctgcctgtgcggcacctccacctccacctccaccaccaccaat
gtgcacctgctcgccaccaccaTGCTCATGTGGAAAATAGATTTCtttct
aaaatcaaatttagaGACACTCTGTTAAAATTGACTATGATAATATTACT
CAATCTTGAGTTCTATTCCTTTTATGGACACTGCAAACTTaataaattct
attttttttgatgttcgtaaaattgtaaatttagatattttttgaaagaa
ttataCTTCCACTTTACACATTTACacataaacaaaatctttctcAATTT
AGCTTGGATATTTCCTTGATTAGTAAATTTACGTATCCTTTATATTTTGC
ACGATTGCATGAAA

Coding sequence (CDS) from alignment at sc0000136_pilon:739672..746335+

>MSTRG.15460.3.p1 ID=MSTRG.15460.3.p1|Name=MSTRG.15460.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1176bp|location=Sequence derived from alignment at sc0000136_pilon:739672..746335+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATAAACGATTTTTGATCTTACTGGTCGCCTTCGTGGCATACACATC
CGCTAAATCTGTTAGCCATGGAGATAAACGATCACCCTGTTCGTGTTCAG
CACCGCCATGTTCATGCCAAGAACTCCCAATGCAAACCATCACTATCCCC
ATGGCTGCCCCATGTGCACCACCAGCCTGTGCCCCACCACCACCAGCTTG
TGCCCCAGCATGTATGCCAGCATGTGCACCAGGATGTGGTGCCGGTGGAG
CCGGAGCCgctccaccaccaccaccaccaccaccagtcccaggaccacca
ggatctatgggaccagtcggaccaccaggaggaccaggaggcccaggacc
agctggacctccaggaccaccaggaaccccaggatcaggaggtccaccag
gaccaccaggaccaccaggacctccaggagccccagctccaccagctcca
ccaccaccaccagtCTGCTTACATCACTGCATGAAAATCTGTCCAGCTCC
AGcacctgcctgtgcggcacctccacctccacctccaccaccaccaatgt
gcacctgctcgccaccaccaTGCTCATGTGGAAAATAGATGGATAAACGA
TTTTTGATCTTACTGGTCGCCTTCGTGGCATACACATCCGCTAAATCTGT
TAGCCATGGAGATAAACGATCACCCTGTTCGTGTTCAGCACCGCCATGTT
CATGCCAAGAACTCCCAATGCAAACCATCACTATCCCCATGGCTGCCCCA
TGTGCACCACCAGCCTGTGCCCCACCACCACCAGCTTGTGCCCCAGCATG
TATGCCAGCATGTGCACCAGGATGTGGTGCCGGTGGAGCCGGAGCCgctc
caccaccaccaccaccaccaccagtcccaggaccaccaggatctatggga
ccagtcggaccaccaggaggaccaggaggcccaggaccagctggacctcc
aggaccaccaggaaccccaggatcaggaggtccaccaggaccaccaggac
caccaggacctccaggagccccagctccaccagctccaccaccaccacca
gtCTGCTTACATCACTGCATGAAAATCTGTCCAGCTCCAGcacctgcctg
tgcggcacctccacctccacctccaccaccaccaatgtgcacctgctcgc
caccaccaTGCTCATGTGGAAAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15460MSTRG.15460Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15460.3.p1MSTRG.15460.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15460.3.p1.exon1MSTRG.15460.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15460.3.p1.exon2MSTRG.15460.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15460.3.p1.exon3MSTRG.15460.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136_pilongenomesc0000136_pilon:739672..746335 +