MSTRG.15359.1.p1 (mRNA) -

Overview
NameMSTRG.15359.1.p1
Unique NameMSTRG.15359.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000135_pilon:120536..123556+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15359.1.p1 ID=MSTRG.15359.1.p1|Name=MSTRG.15359.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3021bp|location=Sequence derived from alignment at sc0000135_pilon:120536..123556+ (Clytia hemisphaerica_ch_hm2_pilon)
ATATCTgcagaaagtaaacaaaaaattgtttattttgcaCAAATAGATTT
ACAGTAAAAAGCTCTAAGAGTAGTGGAATTTGATCAGTTTTCTTGTGACT
GTTTGTGGAAAAAGTCTTTCTAATTTGGTGGTTGTCTTTCTATCTACGAC
TTTTGAAGATAAAAGGAAAATCTTAACGCTAGACATTAACTTTCACAACT
ATGGATGGTTCATGTAACAAATGCATCAAATATTTGatgtttatttttaa
tttcatcttttgggtaagtatttttttaaatcttaatctttttaTTCTCC
TCCAAAAATACTTTCTAACAGAGTATAATAACTTTCTACTAAAGCTAAAT
GGGTGCTGAGAAATTATTCAAAAAGTAAAACGTTCACataattttgagac
agacttttaGTAACTCCACAtatttttgagacagacttttaGTACCTCCC
TGAACAGTGTTTAATTCGAAAATTCTGATTAATTAATTcgaaaaaacacc
cctgtctcaacaacccggtggaaccttttcttTCAGTTGGAATGAAGctt
tatcgaaatcccaatgggataAAAAGACAGTTTCCAATTTTCACTGCTTG
ATTTTGAATGGGAATAAAATCGTCGGGTGATATCGCAGAGAGGTTaaaat
tggtattttttttaACGGGGACGAGTttctggccaatttttccagttggc
CGTGGgaccaccgggtctgtgacacgacGTTGTTTCGTATCATCCTTCTT
TATTTATCTTACTCTATTCGTTTTCTCTTTTCAGCTCAGTGGATTAGCAC
TCATTATAATAGGGTCGTATATGAAAACACGATATGGTGATTATCTATCT
TACGGTGACGGTTACAAATTTCTATCAGTATCAGTCTTCGTTATTGTTCT
TGGTgtaattattttcattcttGGATTTTTGGGTTGCTGTGGAGCTATCA
AAGAAAATTACTGTATGATCACAACATTCGCAATTCTCATGAGTATCATT
TTGATTCTTCAAATTGCAGCTGGTGTTCTTGGATTTGTTTACAAAGGAAA
GGCAAAATAACTTCAGTATGGGtaaacccccttctcacagacctggcatg
agttttttagccagtgggggtaaaaataacggacaagAACTTGATGGGGG
ATTGCTATTGCCATATTTCTATCTATTGTTTTTCAGCGGGGATgggaaaa
aaaagatatttttgcagtgaggattattttcagtggggacggaatttgga
gtataattttccactggggaggatatttaggccaatttttcaagtggggc
tgtgagaaaggggtatATGGATTGTGGAAATACTCTCATACCTCTCAAAA
AACAGCTACATACTAGGGCCCTAGAACAATTAATTACCCAACAGCTGTCT
GAAGGCAATCGTTTAGGCTTCTGCTATCCTCTGGAGGAAGATATCAATCT
AGTTATTTTCTGCCCTGCATATTAGAGGTTAATTACAGGTATCAAGCGGT
GACACAAATAGCActgtcttcattttttttgggaattttaatGTAAGAAA
TGGCATATATTCGTTCCTAAGATCTTTGTACTACTATAAGTTtactaaaa
attaattttcaacacGACAGGTCGAAACAATCGTTGAAAATACATTAAAC
GGTGCtgtgcaaaaatattttgacgatAGCCAACCAGGTGCTAAAACACT
CTTAGATTGGgctcaacaaaaatttgaatgctGTGGAATCAAAGGGCCTG
GTGACTACAGACAACCCTCCACAACATCATCTTATTACTGTGCCAAGTCT
GGTGGTGTGGCTTCTTGTTACTCTGATAACAAATGTGGTTCTGGCGTCCA
ATATGGTGAAGGTTGCGAGCAGAGTGTAATTGATATTGCCAAGAACAACA
TGTTACTGTGTGGTGCTTTTGCAATAGCATTCGCTCTAATACAAGTAAGT
AGAGTTTAAAAATCTTCGTAACGTCGTGCTATTGCTACTTAGGACCCTCC
CCTACCTTAGGGTATATAGCTAACGAAGGAAACGCTTTTAGGTCGCCCCC
TACTGCGGTCACAGACTTACTAGACTAAAGTcttacttctgactgaactt
tgctttctgatgattttgatggcgttgagtccagtgaagtataCTAGAGG
ATATtgccatcttgaatttcttcactttcgttttcaaaaattatatcaaG
ACgccaaaacaataaaatatattctaaaatcCAATCAAAGTTTACGAGAC
TAtaataaaaactcaaaaataccTCCTAACTTTGAAAACAATCGATCCCT
TGGTCATagttttctatttgtttttctcGAAAAgaggactggatctagtg
gcatgtatttgctaccacctcaaaaGATGGAGCCTGCCAAATtacaccgg
gccacttatcagcgccatccagtctatcagtGGCCCCAGGGCtacagact
tacttacttattttAGTCTAGATACtatcttttgaattttaatttcagAT
ACTCGGAGTGACATTTGCTTGCTGTCTCATGAAATCAGTCAGAAATAGTT
ACGAAACCGTTTAAAGTTACGCTGGGAACGCTGGGAAAGCTGATTTCTAC
TGTGCTCGTTGCAAATAATATCCATCTTGATCTCATCCAAAAGTTAATGA
CTAAATCTAACAGCCCACAAAAAGCTTTACTGGAATCAATAattttaagg
aatttattttcgatttttttcataaattgtggaaattatttttcatcttt
aattttcTGTTACTTCTTCATATATGTACAATgtgaataaaaatttcttt
ctctataataataataatcttagaaaggaataaataaaaattttcatcta
aaaccgaaaaaatTGGACAGGAGGTATTCAGACATGCATCTTTATTCTGG
ATTgcgaaaaattgcgaaaaattgcgaaaaattctGTCAGGTCAAGTCTG
GCAGTTcaggatttttttttacttagacgagaccaatttgattcgttgtt
ttacgggcccgaccgaccctg

Coding sequence (CDS) from alignment at sc0000135_pilon:120536..123556+

>MSTRG.15359.1.p1 ID=MSTRG.15359.1.p1|Name=MSTRG.15359.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2880bp|location=Sequence derived from alignment at sc0000135_pilon:120536..123556+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATGGTTCATGTAACAAATGCATCAAATATTTGatgtttatttttaa
tttcatcttttggCTCAGTGGATTAGCACTCATTATAATAGGGTCGTATA
TGAAAACACGATATGGTGATTATCTATCTTACGGTGACGGTTACAAATTT
CTATCAGTATCAGTCTTCGTTATTGTTCTTGGTgtaattattttcattct
tGGATTTTTGGGTTGCTGTGGAGCTATCAAAGAAAATTACTGTATGATCA
CAACATTCGCAATTCTCATGAGTATCATTTTGATTCTTCAAATTGCAGCT
GGTGTTCTTGGATTTGTTTACAAAGGAAAGGTCGAAACAATCGTTGAAAA
TACATTAAACGGTGCtgtgcaaaaatattttgacgatAGCCAACCAGGTG
CTAAAACACTCTTAGATTGGgctcaacaaaaatttgaatgctGTGGAATC
AAAGGGCCTGGTGACTACAGACAACCCTCCACAACATCATCTTATTACTG
TGCCAAGTCTGGTGGTGTGGCTTCTTGTTACTCTGATAACAAATGTGGTT
CTGGCGTCCAATATGGTGAAGGTTGCGAGCAGAGTGTAATTGATATTGCC
AAGAACAACATGTTACTGTGTGGTGCTTTTGCAATAGCATTCGCTCTAAT
ACAAATACTCGGAGTGACATTTGCTTGCTGTCTCATGAAATCAGTCAGAA
ATAGTTACGAAACCGTTTAAATGGATGGTTCATGTAACAAATGCATCAAA
TATTTGatgtttatttttaatttcatcttttggCTCAGTGGATTAGCACT
CATTATAATAGGGTCGTATATGAAAACACGATATGGTGATTATCTATCTT
ACGGTGACGGTTACAAATTTCTATCAGTATCAGTCTTCGTTATTGTTCTT
GGTgtaattattttcattcttGGATTTTTGGGTTGCTGTGGAGCTATCAA
AGAAAATTACTGTATGATCACAACATTCGCAATTCTCATGAGTATCATTT
TGATTCTTCAAATTGCAGCTGGTGTTCTTGGATTTGTTTACAAAGGAAAG
GTCGAAACAATCGTTGAAAATACATTAAACGGTGCtgtgcaaaaatattt
tgacgatAGCCAACCAGGTGCTAAAACACTCTTAGATTGGgctcaacaaa
aatttgaatgctGTGGAATCAAAGGGCCTGGTGACTACAGACAACCCTCC
ACAACATCATCTTATTACTGTGCCAAGTCTGGTGGTGTGGCTTCTTGTTA
CTCTGATAACAAATGTGGTTCTGGCGTCCAATATGGTGAAGGTTGCGAGC
AGAGTGTAATTGATATTGCCAAGAACAACATGTTACTGTGTGGTGCTTTT
GCAATAGCATTCGCTCTAATACAAATACTCGGAGTGACATTTGCTTGCTG
TCTCATGAAATCAGTCAGAAATAGTTACGAAACCGTTTAAATGGATGGTT
CATGTAACAAATGCATCAAATATTTGatgtttatttttaatttcatcttt
tggCTCAGTGGATTAGCACTCATTATAATAGGGTCGTATATGAAAACACG
ATATGGTGATTATCTATCTTACGGTGACGGTTACAAATTTCTATCAGTAT
CAGTCTTCGTTATTGTTCTTGGTgtaattattttcattcttGGATTTTTG
GGTTGCTGTGGAGCTATCAAAGAAAATTACTGTATGATCACAACATTCGC
AATTCTCATGAGTATCATTTTGATTCTTCAAATTGCAGCTGGTGTTCTTG
GATTTGTTTACAAAGGAAAGGTCGAAACAATCGTTGAAAATACATTAAAC
GGTGCtgtgcaaaaatattttgacgatAGCCAACCAGGTGCTAAAACACT
CTTAGATTGGgctcaacaaaaatttgaatgctGTGGAATCAAAGGGCCTG
GTGACTACAGACAACCCTCCACAACATCATCTTATTACTGTGCCAAGTCT
GGTGGTGTGGCTTCTTGTTACTCTGATAACAAATGTGGTTCTGGCGTCCA
ATATGGTGAAGGTTGCGAGCAGAGTGTAATTGATATTGCCAAGAACAACA
TGTTACTGTGTGGTGCTTTTGCAATAGCATTCGCTCTAATACAAATACTC
GGAGTGACATTTGCTTGCTGTCTCATGAAATCAGTCAGAAATAGTTACGA
AACCGTTTAAATGGATGGTTCATGTAACAAATGCATCAAATATTTGatgt
ttatttttaatttcatcttttggCTCAGTGGATTAGCACTCATTATAATA
GGGTCGTATATGAAAACACGATATGGTGATTATCTATCTTACGGTGACGG
TTACAAATTTCTATCAGTATCAGTCTTCGTTATTGTTCTTGGTgtaatta
ttttcattcttGGATTTTTGGGTTGCTGTGGAGCTATCAAAGAAAATTAC
TGTATGATCACAACATTCGCAATTCTCATGAGTATCATTTTGATTCTTCA
AATTGCAGCTGGTGTTCTTGGATTTGTTTACAAAGGAAAGGTCGAAACAA
TCGTTGAAAATACATTAAACGGTGCtgtgcaaaaatattttgacgatAGC
CAACCAGGTGCTAAAACACTCTTAGATTGGgctcaacaaaaatttgaatg
ctGTGGAATCAAAGGGCCTGGTGACTACAGACAACCCTCCACAACATCAT
CTTATTACTGTGCCAAGTCTGGTGGTGTGGCTTCTTGTTACTCTGATAAC
AAATGTGGTTCTGGCGTCCAATATGGTGAAGGTTGCGAGCAGAGTGTAAT
TGATATTGCCAAGAACAACATGTTACTGTGTGGTGCTTTTGCAATAGCAT
TCGCTCTAATACAAATACTCGGAGTGACATTTGCTTGCTGTCTCATGAAA
TCAGTCAGAAATAGTTACGAAACCGTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15359MSTRG.15359Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15359.1.p1MSTRG.15359.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15359.1.p1.exon1MSTRG.15359.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15359.1.p1.exon2MSTRG.15359.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15359.1.p1.exon3MSTRG.15359.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15359.1.p1.exon4MSTRG.15359.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000135_pilongenomesc0000135_pilon:120536..123556 +